Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020780 Carpinus fangiana HOM05D006038 ORTHO05D007547 6.3e-117 424.1 211 100.0
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 2.8e-112 408.7 210 95.7
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 2.3e-111 405.6 210 94.8
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 6.0e-83 311.2 221 71.9
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 1.2e-80 303.5 214 70.6
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 1.1e-73 280.4 205 67.3
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 1.3e-69 266.9 204 65.7
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 1.3e-69 266.9 204 65.7
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 2.2e-69 266.2 214 63.1
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 8.4e-69 264.2 213 62.4
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.9e-68 263.1 218 64.2
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.4e-68 261.5 216 64.4
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.1e-67 259.6 216 63.9
Dinv41342 Davidia involucrata HOM05D006038 ORTHO05D007547 2.1e-67 259.6 201 63.2
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 3.5e-67 258.8 204 62.3
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 6.0e-67 258.1 204 62.7
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.3e-66 256.9 216 63.4
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 1.3e-66 256.9 213 62.4
arahy.Tifrunner.gnm1.ann1.3R6I6F Arachis hypogaea HOM05D006038 ORTHO05D007547 1.7e-66 256.5 214 62.1
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 1.7e-66 256.5 205 63.4
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 6.6e-66 254.6 221 60.2
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 1.1e-65 253.8 215 59.5
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 3.3e-65 252.3 204 61.8
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 7.3e-65 251.1 213 59.6
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 4.8e-64 248.4 200 61.5
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 4.8e-64 248.4 200 61.5
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 6.2e-64 248.1 213 59.6
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 1.8e-63 246.5 200 61.5
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 2.4e-63 246.1 216 60.2
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 9.0e-63 244.2 216 60.2
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 9.0e-63 244.2 213 58.7
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 2.6e-62 242.7 202 60.4
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 5.8e-62 241.5 213 57.3
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 7.6e-62 241.1 203 65.5
COL.COLO4_05400 Corchorus olitorius HOM05D006038 ORTHO05D007547 1.7e-61 240.0 219 58.4
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 1.7e-61 240.0 216 58.3
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 1.7e-61 240.0 216 58.3
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 1.7e-61 240.0 200 60.5
CSS0027410 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.9e-61 238.4 217 61.3
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 6.4e-61 238.0 208 59.1
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 6.4e-61 238.0 208 59.1
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 8.4e-61 237.7 214 57.0
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 3.2e-60 235.7 216 56.5
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 4.2e-60 235.3 204 60.8
CSS0013086 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 7.1e-60 234.6 217 60.8
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 1.6e-59 233.4 208 58.2
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 4.6e-59 231.9 209 57.9
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.3e-58 230.3 206 62.1
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 3.0e-58 229.2 216 56.9
CSS0009266 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.9e-58 228.8 217 58.5
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 5.1e-58 228.4 206 56.8
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 2.1e-56 223.0 205 56.1
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 1.1e-55 220.7 205 55.6
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 1.4e-55 220.3 208 59.1
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 2.4e-55 219.5 207 57.5
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 3.1e-55 219.2 220 53.6
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 3.1e-55 219.2 220 53.6
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 1.5e-54 216.9 226 55.3
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 3.4e-54 215.7 213 54.9
Lj7A464T42 Lonicera japonica HOM05D006038 ORTHO05D007547 1.0e-53 214.2 204 57.4
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 1.0e-53 214.2 214 54.7
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 3.8e-53 212.2 222 53.6
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 3.8e-53 212.2 206 57.3
MBI15_g26068_MAGBIO Magnolia biondii HOM05D006038 ORTHO05D007547 6.5e-53 211.5 201 56.7
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 1.1e-52 210.7 223 52.0
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 3.2e-52 209.1 206 56.3
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 4.2e-52 208.8 222 50.5
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 9.3e-52 207.6 204 55.9
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 1.2e-51 207.2 216 50.9
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 4.6e-51 205.3 217 55.3
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 7.9e-51 204.5 216 54.2
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 1.8e-50 203.4 207 54.6
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 3.0e-50 202.6 206 56.3
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 5.1e-50 201.8 201 51.2
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 8.7e-50 201.1 206 52.9
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 1.1e-49 200.7 209 54.5
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 1.1e-49 200.7 227 48.9
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 1.5e-49 200.3 215 50.7
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 1.5e-49 200.3 213 51.2
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 2.5e-49 199.5 205 49.8
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 7.4e-49 198.0 218 49.5
A03p60370 Brassica napus HOM05D006038 ORTHO05D007547 4.8e-48 195.3 207 51.7
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 4.8e-48 195.3 207 51.7
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 1.1e-47 194.1 222 49.5
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 3.1e-47 192.6 207 51.2
C07p58240 Brassica napus HOM05D006038 ORTHO05D007547 3.1e-47 192.6 207 51.2
BolC7t46282H Brassica oleracea HOM05D006038 ORTHO05D007547 5.3e-47 191.8 207 51.2
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 6.9e-47 191.4 218 49.5
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 9.0e-47 191.0 205 51.2
BcaNung01557 Brassica carinata HOM05D006038 ORTHO05D007547 9.0e-47 191.0 206 52.4
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 9.0e-47 191.0 212 50.0
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 1.5e-46 190.3 214 50.5
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 2.6e-46 189.5 203 49.8
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 3.4e-46 189.1 214 49.5
Thhalv10025548m.g Eutrema salsugineum HOM05D006038 ORTHO05D007547 3.4e-46 189.1 214 49.5
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 5.8e-46 188.3 214 50.0
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 5.8e-46 188.3 212 50.9
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 2.2e-45 186.4 214 50.0
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 4.2e-44 182.2 206 51.0
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 7.9e-43 177.9 212 49.5
CSS0024276 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.1e-42 175.3 211 49.8
SHI18668 Sapria himalayana HOM05D006038 ORTHO05D007547 6.7e-42 174.9 205 47.3
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 5.7e-41 171.8 213 49.3
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 2.5e-33 146.4 172 47.7
SMO367G0193 Selaginella moellendorffii HOM05D006038 ORTHO05D007547 7.4e-33 144.8 208 41.8
AagrBONN_evm.TU.Sc2ySwM_117.2538 Anthoceros agrestis HOM05D006038 ORTHO05D007547 1.8e-31 140.2 215 38.1
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 2.9e-29 132.9 110 56.4
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 1.2e-27 127.5 132 52.3
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 2.3e-26 123.2 206 38.8
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 1.4e-23 114.0 209 38.3
A01p07320 Brassica napus HOM05D006038 ORTHO05D007547 5.9e-22 108.6 184 41.8
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 2.6e-14 83.2 230 26.1
QL93p0107_0059 Quercus lobata HOM05D006038 ORTHO05D007547 2.9e-13 79.7 56 67.9


User provided reference genes

Program Settings