Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 1.4e-207 726.1 374 100.0
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 6.1e-147 524.6 359 78.0
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 3.7e-144 515.4 363 76.0
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 1.1e-143 513.8 392 73.7
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 4.0e-114 415.6 356 62.6
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 9.8e-113 411.0 365 60.5
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 4.9e-112 408.7 369 62.1
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 1.4e-111 407.1 362 63.5
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 1.0e-109 401.0 362 59.9
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 5.6e-108 395.2 354 60.2
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 3.6e-107 392.5 365 60.8
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 4.0e-106 389.0 363 62.0
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 6.8e-106 388.3 362 60.5
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 9.9e-105 384.4 356 60.1
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 2.2e-104 383.3 358 57.3
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 4.9e-104 382.1 364 59.9
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 1.9e-103 380.2 366 59.3
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 2.4e-103 379.8 367 59.4
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 3.2e-103 379.4 362 59.7
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.2e-102 377.5 361 57.6
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 2.1e-102 376.7 361 58.7
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 3.5e-102 375.9 364 58.5
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 2.5e-100 369.8 359 58.2
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.5e-97 360.5 376 56.1
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 9.9e-97 357.8 348 55.7
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.1e-95 354.4 350 57.4
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 2.4e-95 353.2 352 57.1
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 7.1e-95 351.7 354 53.7
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 7.1e-95 351.7 350 56.9
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 9.2e-95 351.3 408 51.5
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 2.7e-94 349.7 350 56.9
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 6.0e-94 348.6 350 56.3
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 2.1e-91 340.1 358 55.0
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 6.2e-91 338.6 360 52.8
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 2.4e-90 336.7 333 57.1
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 5.3e-90 335.5 355 53.8
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 1.2e-89 334.3 358 54.5
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 9.9e-89 331.3 358 53.1
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 4.9e-88 328.9 329 55.9
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 2.4e-87 326.6 364 52.2
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 6.0e-86 322.0 352 54.3
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 6.0e-86 322.0 371 50.9
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 6.6e-85 318.5 373 52.3
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 1.5e-84 317.4 356 51.7
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 1.5e-84 317.4 361 52.4
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 2.5e-84 316.6 350 52.9
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 7.3e-84 315.1 358 50.0
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 7.3e-84 315.1 357 54.1
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 7.3e-84 315.1 353 50.7
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 1.1e-82 311.2 359 52.6
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 4.0e-82 309.3 360 50.6
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 5.3e-82 308.9 355 53.5
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 2.0e-81 307.0 354 53.4
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 7.6e-81 305.1 352 50.3
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 3.8e-80 302.8 352 50.0
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 8.4e-80 301.6 365 48.8
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 1.9e-79 300.4 362 47.8
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 3.5e-78 296.2 355 50.1
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 6.7e-77 292.0 363 51.2
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 7.4e-76 288.5 391 46.8
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 2.1e-75 287.0 346 49.1
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 3.1e-74 283.1 365 46.6
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 7.6e-73 278.5 349 47.6
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 1.1e-71 274.6 352 47.2
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 1.4e-71 274.2 374 46.0
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 4.6e-70 269.2 263 56.7
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 6.0e-70 268.9 371 45.3
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 2.3e-69 266.9 335 48.4
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 2.3e-69 266.9 349 45.3
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 5.1e-69 265.8 353 47.9
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 6.7e-69 265.4 359 43.7
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 3.3e-68 263.1 353 46.5
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 3.3e-68 263.1 352 47.2
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 5.6e-68 262.3 352 46.6
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 7.4e-68 261.9 352 46.9
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 7.4e-68 261.9 281 53.7
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 9.6e-68 261.5 346 48.3
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 1.6e-67 260.8 464 38.8
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 2.1e-67 260.4 353 46.5
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 8.2e-67 258.5 349 47.6
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 1.8e-66 257.3 309 48.2
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 5.3e-66 255.8 349 46.4
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 5.3e-66 255.8 353 46.5
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 1.2e-65 254.6 348 45.4
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 1.0e-64 251.5 318 45.9
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 6.5e-64 248.8 353 45.0
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.4e-63 247.7 349 45.6
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 3.2e-63 246.5 352 45.2
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 4.2e-63 246.1 344 44.8
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 9.3e-63 245.0 348 44.5
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 1.6e-62 244.2 287 48.4
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 2.3e-61 240.4 348 44.0
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 8.2e-59 231.9 205 62.9
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 1.4e-58 231.1 122 95.9
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 1.8e-58 230.7 339 43.4
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 1.0e-56 224.9 352 42.6
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 1.7e-56 224.2 373 44.2
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.4e-55 221.1 278 46.0
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 1.9e-55 220.7 369 40.1
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 2.7e-54 216.9 314 41.7
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 7.9e-54 215.3 198 61.1
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 5.1e-53 212.6 286 46.5
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 1.5e-52 211.1 321 41.1
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 1.3e-51 208.0 276 47.8
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 2.2e-51 207.2 356 37.1
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 3.7e-51 206.5 367 40.1
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 5.3e-50 202.6 365 38.6
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 3.8e-48 196.4 210 51.0
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 4.2e-47 193.0 215 49.8
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 5.5e-47 192.6 364 38.7
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 1.0e-45 188.3 312 39.1
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 2.3e-45 187.2 353 38.2
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 2.3e-45 187.2 369 32.8
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 2.0e-44 184.1 312 40.7
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 2.7e-38 163.7 265 42.3
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 2.7e-38 163.7 265 42.3
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 2.7e-38 163.7 265 42.3
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 1.7e-35 154.5 226 43.8
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 2.2e-35 154.1 212 46.2
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 3.7e-35 153.3 252 40.5
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 8.2e-35 152.1 215 42.8
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 3.1e-34 150.2 254 40.9
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 4.7e-30 136.3 299 33.8
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 3.4e-28 130.2 173 42.2
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 2.9e-24 117.1 396 26.3
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 6.5e-24 115.9 134 49.3
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 2.1e-22 110.9 127 45.7
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 2.3e-21 107.5 391 28.1
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 9.8e-20 102.1 106 47.2
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 1.8e-18 97.8 94 60.6
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 1.6e-17 94.7 94 57.4
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 2.1e-14 84.3 62 64.5
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 4.7e-14 83.2 202 31.2
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 4.0e-13 80.1 77 57.1
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 1.2e-12 78.6 62 61.3
AagrBONN_evm.TU.Sc2ySwM_228.2452 Anthoceros agrestis HOM05D034800 ORTHO05D006884 5.7e-12 76.3 193 25.9
AagrBONN_evm.TU.Sc2ySwM_344.4450 Anthoceros agrestis HOM05D034800 ORTHO05D006884 1.1e-10 72.0 389 24.7
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 5.6e-07 59.7 43 69.8


User provided reference genes

Program Settings