Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 0.0e+00 1119.0 557 100.0
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 2.7e-311 1071.2 557 96.4
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 5.3e-296 1020.4 554 90.6
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 1.2e-292 1009.2 555 89.2
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 2.2e-278 961.8 557 85.5
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 5.0e-278 960.7 555 85.4
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 7.2e-277 956.8 555 84.9
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.5e-274 948.3 555 83.6
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 5.7e-274 947.2 555 83.4
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 6.3e-273 943.7 555 83.1
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 1.4e-272 942.6 555 84.1
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 1.8e-272 942.2 556 83.8
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 2.4e-272 941.8 556 82.0
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 2.4e-272 941.8 555 82.5
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 3.1e-272 941.4 552 83.0
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 5.3e-272 940.6 556 83.5
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 6.9e-272 940.3 550 84.2
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 2.9e-270 934.9 556 81.8
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 5.0e-270 934.1 555 83.1
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 3.2e-269 931.4 556 81.5
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 9.4e-269 929.9 555 81.1
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 1.6e-268 929.1 565 81.9
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 3.6e-268 927.9 557 82.0
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 1.8e-267 925.6 555 81.6
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 2.3e-267 925.2 557 82.4
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 3.0e-267 924.9 554 83.8
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 5.1e-267 924.1 556 80.9
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 3.3e-266 921.4 554 81.2
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 5.7e-266 920.6 558 81.7
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 7.4e-266 920.2 554 81.0
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 1.3e-265 919.5 554 80.9
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.7e-265 919.1 554 81.8
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.8e-264 915.6 555 81.4
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 7.0e-264 913.7 557 80.8
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 9.1e-264 913.3 557 81.9
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 1.2e-263 912.9 557 81.3
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 1.5e-263 912.5 558 80.8
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 3.5e-263 911.4 556 79.7
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 4.5e-263 911.0 554 80.9
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 5.9e-263 910.6 557 79.2
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.2e-262 908.7 556 79.5
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 1.5e-261 906.0 573 77.5
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 4.2e-261 904.4 556 78.2
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 5.5e-261 904.0 555 79.8
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 9.4e-261 903.3 557 79.0
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 9.4e-261 903.3 556 78.1
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 9.4e-261 903.3 558 79.9
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 1.2e-260 902.9 555 78.2
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.6e-260 902.5 556 79.7
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 3.6e-260 901.4 557 79.2
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 5.2e-259 897.5 554 78.5
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 5.2e-259 897.5 556 78.2
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 5.2e-259 897.5 554 79.2
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 2.0e-258 895.6 553 79.0
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 4.4e-258 894.4 572 76.2
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 5.7e-258 894.0 555 79.1
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 3.7e-257 891.3 525 84.2
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 4.8e-257 891.0 554 78.5
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 8.2e-257 890.2 554 78.5
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 8.2e-257 890.2 555 78.0
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 4.1e-256 887.9 555 77.7
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 9.1e-256 886.7 557 77.6
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 3.5e-255 884.8 553 78.7
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 5.9e-255 884.0 555 78.6
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.9e-253 879.0 573 76.3
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 3.2e-253 878.2 555 77.8
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 3.2e-253 878.2 554 77.3
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 3.2e-253 878.2 554 77.3
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 3.2e-253 878.2 554 77.3
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 2.7e-252 875.2 554 77.3
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 4.7e-252 874.4 554 77.3
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 1.4e-251 872.8 535 78.3
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 3.0e-251 871.7 582 74.7
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 7.5e-250 867.1 554 76.5
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 1.3e-249 866.3 555 77.1
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 2.8e-249 865.1 554 76.7
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 1.1e-248 863.2 554 77.4
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 1.8e-248 862.4 542 78.0
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 2.4e-248 862.1 555 75.5
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 4.1e-248 861.3 556 76.6
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 9.1e-248 860.1 562 75.8
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 9.1e-248 860.1 558 74.9
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.2e-247 859.8 539 77.4
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 1.2e-247 859.8 554 75.8
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 5.9e-247 857.4 556 76.3
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 1.7e-246 855.9 555 75.7
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 5.0e-246 854.4 560 75.5
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 5.0e-246 854.4 556 75.7
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 5.5e-245 850.9 552 75.5
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 7.2e-245 850.5 597 72.2
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 9.4e-245 850.1 572 74.0
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 9.4e-245 850.1 514 79.6
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 1.2e-244 849.7 560 75.4
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 3.6e-244 848.2 556 75.5
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 6.1e-244 847.4 530 78.7
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 1.4e-243 846.3 567 74.8
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 1.4e-243 846.3 560 77.5
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 1.8e-243 845.9 556 73.6
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 5.2e-243 844.3 538 75.5
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 2.0e-242 842.4 552 75.0
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 3.7e-241 838.2 548 73.5
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 3.1e-240 835.1 553 73.1
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 1.2e-239 833.2 557 73.8
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 1.7e-238 829.3 556 73.9
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 3.6e-236 821.6 553 73.6
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.9e-233 812.0 598 69.6
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 5.4e-232 807.7 540 73.7
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 1.3e-230 803.1 560 71.8
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 4.3e-229 798.1 554 72.4
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 3.6e-228 795.0 553 71.6
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 1.4e-227 793.1 488 79.3
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 2.4e-224 782.3 488 77.7
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 7.0e-224 780.8 553 69.6
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.0e-222 776.9 560 70.4
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 8.1e-220 767.3 557 66.8
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 3.1e-219 765.4 542 71.6
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 2.3e-214 749.2 445 82.9
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 5.6e-213 744.6 543 70.3
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 3.4e-210 735.3 556 63.8
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.0e-198 697.2 561 64.3
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 8.1e-188 661.0 388 82.7
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.4e-187 659.4 434 76.0
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.4e-187 659.4 550 57.6
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 2.7e-183 646.0 389 81.0
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 5.6e-181 638.3 545 58.5
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 2.9e-177 625.9 388 78.6
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 3.5e-167 592.4 567 55.7
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 3.3e-165 585.9 548 54.9
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 5.9e-162 575.1 486 57.0
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 7.2e-160 568.2 322 87.0
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.2e-143 514.2 290 84.5
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 1.8e-139 500.4 306 81.4
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 5.0e-137 492.3 320 73.4
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.0e-134 482.6 336 70.8
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 9.1e-131 471.5 321 69.2
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.0e-125 453.8 286 76.6
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 5.6e-120 435.6 268 79.1
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 5.9e-114 415.6 273 74.4
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 4.7e-103 379.4 244 77.5
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 2.2e-100 370.5 236 78.8
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 3.5e-98 363.2 236 76.3
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 3.8e-92 343.2 240 71.7
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 5.3e-78 296.2 266 59.4
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 4.8e-55 219.9 137 78.8
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.4e-54 217.6 138 78.3
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 3.1e-54 217.2 191 61.3
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 9.0e-54 215.7 139 77.7
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 1.2e-53 215.3 140 77.1
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.5e-53 214.9 139 77.0
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.3e-47 195.3 128 76.6
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 6.3e-39 166.4 98 81.6
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 2.6e-37 161.0 114 70.2
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 7.2e-27 126.3 105 62.9
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 5.9e-21 106.7 63 77.8
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 5.9e-21 106.7 63 79.4
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 1.7e-20 105.1 63 77.8
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 2.9e-20 104.4 71 69.0
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 8.0e-18 96.3 63 73.0
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 1.8e-17 95.1 62 71.0
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.3e-17 94.7 63 71.4
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 3.0e-17 94.4 495 24.2
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 4.0e-17 94.0 245 27.8
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 1.5e-16 92.0 57 68.4
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 2.4e-14 84.7 413 24.9
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 1.1e-11 75.9 54 68.5
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 1.5e-11 75.5 427 23.9
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 1.2e-10 72.4 52 57.7
ECA247G1273 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.0e-09 69.3 61 54.1
Thecc.03G047200 Theobroma cacao HOM05D000075 ORTHO05D408647 2.4e-06 58.2 64 57.8


User provided reference genes

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