Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020656 Carpinus fangiana HOM05D007091 ORTHO05D008768 1.2e-152 543.1 277 100.0
Haze_18937 Corylus avellana HOM05D007091 ORTHO05D008768 7.8e-115 417.5 220 97.3
QL09p036643 Quercus lobata HOM05D007091 ORTHO05D008768 4.3e-105 385.2 261 77.8
CiPaw.15G149800 Carya illinoinensis HOM05D007091 ORTHO05D008768 1.6e-104 383.3 258 76.0
Prupe.5G238600 Prunus persica HOM05D007091 ORTHO05D008768 2.2e-93 346.3 259 69.1
Dinv01447 Davidia involucrata HOM05D007091 ORTHO05D008768 1.3e-90 337.0 260 68.1
Dinv32110 Davidia involucrata HOM05D007091 ORTHO05D008768 1.3e-90 337.0 259 68.0
MD06G1234100 Malus domestica HOM05D007091 ORTHO05D008768 1.7e-90 336.7 258 68.6
TWI15G0826 Tripterygium wilfordii HOM05D007091 ORTHO05D008768 3.3e-89 332.4 262 66.4
FvH4_5g17800 Fragaria vesca HOM05D007091 ORTHO05D008768 4.3e-89 332.0 258 67.1
vmacro18668 Vaccinium macrocarpon HOM05D007091 ORTHO05D008768 7.3e-89 331.3 258 65.1
RcHm_v2.0_Chr7g0177781 Rosa chinensis HOM05D007091 ORTHO05D008768 1.6e-88 330.1 243 70.0
FAN13G0023 Fragaria x ananassa HOM05D007091 ORTHO05D008768 8.1e-88 327.8 257 64.6
Atru.chr9.1636 Acer truncatum HOM05D007091 ORTHO05D008768 1.1e-87 327.4 258 67.4
Nn4g24542 Nelumbo nucifera HOM05D007091 ORTHO05D008768 4.0e-87 325.5 260 65.0
CSS0046666 Camellia sinensis var. sinensis HOM05D007091 ORTHO05D008768 5.8e-86 321.6 245 69.8
Potri.012G041400 Populus trichocarpa HOM05D007091 ORTHO05D008768 5.8e-86 321.6 259 66.4
TAR629G3120 Trochodendron aralioides HOM05D007091 ORTHO05D008768 7.6e-86 321.2 240 67.5
Ciclev10026363m.g Citrus clementina HOM05D007091 ORTHO05D008768 2.2e-85 319.7 246 67.9
Aqoxy3G04057 Aquilegia oxysepala HOM05D007091 ORTHO05D008768 3.8e-85 318.9 248 64.9
Lalb_Chr22g0353631 Lupinus albus HOM05D007091 ORTHO05D008768 4.2e-84 315.5 257 62.6
GSVIVG01000383001 Vitis vinifera HOM05D007091 ORTHO05D008768 4.2e-84 315.5 245 65.7
Sabra12G0028500 Salix brachista HOM05D007091 ORTHO05D008768 2.1e-83 313.2 259 63.7
MD14G1240800 Malus domestica HOM05D007091 ORTHO05D008768 6.0e-83 311.6 227 70.5
Duzib264G1108 Durio zibethinus HOM05D007091 ORTHO05D008768 1.3e-82 310.5 249 66.3
Hma1.2p1_0844F.1_g227450 Hydrangea macrophylla HOM05D007091 ORTHO05D008768 1.7e-82 310.1 254 66.5
arahy.Tifrunner.gnm1.ann1.0PBM2M Arachis hypogaea HOM05D007091 ORTHO05D008768 8.7e-82 307.8 243 66.7
Actinidia34668 Actinidia chinensis HOM05D007091 ORTHO05D008768 1.1e-81 307.4 244 65.2
arahy.Tifrunner.gnm1.ann1.M1K315 Arachis hypogaea HOM05D007091 ORTHO05D008768 5.6e-81 305.1 236 66.9
Peaxi162Scf01064g00022 Petunia axillaris HOM05D007091 ORTHO05D008768 5.6e-81 305.1 253 60.1
TPR.G31708 Trifolium pratense HOM05D007091 ORTHO05D008768 7.4e-81 304.7 253 63.6
Eucgr.H00567 Eucalyptus grandis HOM05D007091 ORTHO05D008768 9.6e-81 304.3 257 62.3
Ca_20293_v3 Cicer arietinum L. HOM05D007091 ORTHO05D008768 1.6e-80 303.5 251 63.7
Glyma.09G170700 Glycine max HOM05D007091 ORTHO05D008768 8.1e-80 301.2 255 62.7
Manes.14G173700 Manihot esculenta HOM05D007091 ORTHO05D008768 1.8e-79 300.1 238 65.5
CAN.G65.99 Capsicum annuum HOM05D007091 ORTHO05D008768 6.9e-79 298.1 256 60.2
Lj2g0019861 Lotus japonicus HOM05D007091 ORTHO05D008768 9.0e-79 297.7 240 64.6
Sopen06g028870 Solanum pennellii HOM05D007091 ORTHO05D008768 1.2e-78 297.4 253 60.9
Gohir.D11G227400 Gossypium hirsutum HOM05D007091 ORTHO05D008768 4.5e-78 295.4 249 61.4
Gorai.007G246600 Gossypium raimondii HOM05D007091 ORTHO05D008768 1.7e-77 293.5 249 60.6
Nitab4.5_0005533g0060 Nicotiana tabacum HOM05D007091 ORTHO05D008768 2.2e-77 293.1 256 59.0
Cc04_g09250 Coffea canephora HOM05D007091 ORTHO05D008768 4.9e-77 292.0 249 61.4
Medtr6g072100 Medicago truncatula HOM05D007091 ORTHO05D008768 8.4e-77 291.2 259 61.4
Thecc.03G065800 Theobroma cacao HOM05D007091 ORTHO05D008768 8.4e-77 291.2 247 62.3
Solyc06g072500.2 Solanum lycopersicum HOM05D007091 ORTHO05D008768 1.9e-76 290.0 252 59.1
ClCG04G012810 Citrullus lanatus HOM05D007091 ORTHO05D008768 4.2e-76 288.9 250 59.2
Gohir.A11G233700 Gossypium hirsutum HOM05D007091 ORTHO05D008768 4.2e-76 288.9 247 61.9
Nitab4.5_0000033g0140 Nicotiana tabacum HOM05D007091 ORTHO05D008768 4.2e-76 288.9 256 58.2
FAN04G2000 Fragaria x ananassa HOM05D007091 ORTHO05D008768 9.3e-76 287.7 234 63.7
CANSAT35G2054 Cannabis sativa HOM05D007091 ORTHO05D008768 1.6e-75 287.0 239 61.9
COL.COLO4_24457 Corchorus olitorius HOM05D007091 ORTHO05D008768 2.1e-75 286.6 247 61.5
VMungo0464G0064 Vigna mungo HOM05D007091 ORTHO05D008768 2.7e-75 286.2 242 61.2
CDE07G0316 Ceratophyllum demersum HOM05D007091 ORTHO05D008768 3.9e-74 282.3 237 60.3
Migut.I00575 Erythranthe guttata HOM05D007091 ORTHO05D008768 5.1e-74 282.0 244 61.1
MELO3C001924.2 Cucumis melo HOM05D007091 ORTHO05D008768 4.3e-73 278.9 251 57.8
Os05g0387800 Oryza sativa ssp. japonica HOM05D007091 ORTHO05D008768 1.3e-72 277.3 258 58.9
DCAR_004559 Daucus carota HOM05D007091 ORTHO05D009263 4.8e-72 275.4 276 55.1
SEGI_35239 Sequoiadendron giganteum HOM05D007091 ORTHO05D008768 3.1e-71 272.7 244 59.0
Sc10g0009000 Simmondsia chinensis HOM05D007091 ORTHO05D008768 1.2e-70 270.8 246 59.8
HPP92_007322 Vanilla planifolia HOM05D007091 ORTHO05D008768 4.5e-70 268.9 236 63.1
CsaV3_1G004900 Cucumis sativus L. HOM05D007091 ORTHO05D008768 2.5e-68 263.1 247 56.3
Atru.chr9.1624 Acer truncatum HOM05D007091 ORTHO05D008768 6.0e-67 258.5 221 64.3
Lsat_1_v5_gn_2_11841 Lactuca sativa HOM05D007091 ORTHO05D008768 1.8e-66 256.9 249 57.4
C08p18530 Brassica napus HOM05D007091 ORTHO05D008768 9.6e-65 251.1 243 55.1
HanXRQChr06g0179681 Helianthus annuus HOM05D007091 ORTHO05D008768 9.6e-65 251.1 251 55.4
BolC8t49485H Brassica oleracea HOM05D007091 ORTHO05D008768 1.6e-64 250.4 243 54.7
AT1G18335 Arabidopsis thaliana HOM05D007091 ORTHO05D008768 2.1e-64 250.0 239 56.1
Aa31LG7G2780 Aethionema arabicum HOM05D007091 ORTHO05D008768 2.8e-64 249.6 239 54.4
AL1G30710 Arabidopsis lyrata HOM05D007091 ORTHO05D008768 2.8e-64 249.6 238 57.1
BraA08t34976Z Brassica rapa HOM05D007091 ORTHO05D008768 2.8e-64 249.6 243 55.6
A08p30440 Brassica napus HOM05D007091 ORTHO05D008768 6.3e-64 248.4 243 55.1
BcaB03g12975 Brassica carinata HOM05D007091 ORTHO05D008768 1.1e-63 247.7 267 52.1
BcaC07g38895 Brassica carinata HOM05D007091 ORTHO05D008768 1.1e-63 247.7 237 55.7
Thhalv10008624m.g Eutrema salsugineum HOM05D007091 ORTHO05D008768 1.8e-63 246.9 240 56.2
ATR0598G099 Amborella trichopoda HOM05D007091 ORTHO05D008768 4.1e-63 245.7 204 61.3
Sp1g16300 Schrenkiella parvula HOM05D007091 ORTHO05D008768 6.9e-63 245.0 249 53.8
Psat1g124480 Pisum sativum HOM05D007091 ORTHO05D008768 9.0e-63 244.6 211 62.6
SEGI_03292 Sequoiadendron giganteum HOM05D007091 ORTHO05D008768 9.0e-63 244.6 243 54.3
Carub.0001s1796 Capsella rubella HOM05D007091 ORTHO05D008768 1.2e-62 244.2 239 55.2
PSO384G3314 Papaver somniferum HOM05D007091 ORTHO05D008768 8.5e-61 238.0 243 58.0
PSO421G0160 Papaver somniferum HOM05D007091 ORTHO05D008768 8.5e-61 238.0 239 56.9
Mapoly0049s0094 Marchantia polymorpha HOM05D007091 ORTHO05D008768 5.5e-60 235.3 249 49.8
CARHR018920 Cardamine hirsuta HOM05D007091 ORTHO05D008768 1.2e-59 234.2 237 54.4
Zm00001eb256360 Zea mays HOM05D007091 ORTHO05D008768 2.1e-59 233.4 223 57.0
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 2.7e-59 233.0 259 51.0
MSTRG.11241 Avicennia marina HOM05D007091 ORTHO05D008768 3.0e-58 229.6 171 67.3
EL10Ac1g00193 Beta vulgaris HOM05D007091 ORTHO05D008768 5.1e-58 228.8 194 61.9
SMO347G0535 Selaginella moellendorffii HOM05D007091 ORTHO05D008768 1.9e-57 226.9 235 53.2
Os02g0772300 Oryza sativa ssp. japonica HOM05D007091 ORTHO05D008768 1.4e-55 220.7 202 57.9
SGA_v2.0_scaffold40G15610 Striga asiatica HOM05D007091 ORTHO05D008768 6.9e-55 218.4 196 58.2
Oeu058744.1 Olea europaea HOM05D007091 ORTHO05D008768 2.6e-54 216.5 186 62.9
Hund27153 Selenicereus undatus HOM05D007091 ORTHO05D008768 3.4e-54 216.1 249 50.2
Phvul.004G146400 Phaseolus vulgaris HOM05D007091 ORTHO05D008768 1.9e-52 210.3 183 58.5
SHI19106 Sapria himalayana HOM05D007091 ORTHO05D008768 2.1e-51 206.8 169 62.7
AUR62022670 Chenopodium quinoa HOM05D007091 ORTHO05D008768 2.3e-50 203.4 173 61.3
AUR62004555 Chenopodium quinoa HOM05D007091 ORTHO05D008768 6.7e-50 201.8 171 62.0
Sed0004344 Sechium edule HOM05D007091 ORTHO05D008768 7.4e-49 198.4 196 54.1
Pp3c17_14350 Physcomitrium patens HOM05D007091 ORTHO05D008768 9.7e-49 198.0 204 52.9
ECA238G0701 Erigeron canadensis HOM05D007091 ORTHO05D008768 3.1e-47 193.0 174 59.8
Pp3c9_11360 Physcomitrium patens HOM05D000137 ORTHO05D000382 2.0e-46 190.3 270 44.4
AagrBONN_evm.TU.Sc2ySwM_228.1246 Anthoceros agrestis HOM05D007091 ORTHO05D008768 2.5e-44 183.3 205 47.3
Lj9P415T25 Lonicera japonica HOM05D007091 ORTHO05D008768 6.7e-42 175.3 134 66.4
Pp3c15_11610 Physcomitrium patens HOM05D000137 ORTHO05D008768 2.0e-41 173.7 247 42.1
PGSC0003DMG401027044 Solanum tuberosum HOM05D007091 ORTHO05D008768 2.6e-41 173.3 157 59.9
MCO05G578 Micromonas commoda HOM05D007091 ORTHO05D008768 7.5e-33 145.2 244 38.9
CBR_g40646 Chara braunii HOM05D007091 ORTHO05D008768 1.8e-31 140.6 377 29.4
BcaC03g18194 Brassica carinata HOM05D007091 ORTHO05D008768 2.1e-27 127.1 124 53.2
TWI81G1026 Tripterygium wilfordii HOM05D007091 ORTHO05D008768 1.8e-23 114.0 137 50.4
unitig_21.g20331 Utricularia gibba HOM05D007091 ORTHO05D008768 7.0e-23 112.1 108 59.3
C02p62570 Brassica napus HOM05D001735 ORTHO05D001640 9.5e-20 101.7 80 65.0
BolC2t12316H Brassica oleracea HOM05D007091 ORTHO05D008768 5.7e-17 92.4 102 48.0
PSO832G1393 Papaver somniferum HOM05D007091 ORTHO05D008768 6.3e-16 89.0 93 54.8
MCO07G264 Micromonas commoda HOM05D007091 ORTHO05D008768 5.9e-14 82.4 156 35.3
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 2.1e-11 73.9 80 46.2
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 1.0e-10 71.6 80 45.0
MCO15G558 Micromonas commoda HOM05D007091 ORTHO05D008768 1.4e-10 71.2 177 28.8
Cre10.g431450 Chlamydomonas reinhardtii HOM05D007091 ORTHO05D008768 5.2e-10 69.3 204 28.4
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 3.4e-09 66.6 86 43.0
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 3.4e-09 66.6 86 43.0
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 1.8e-07 60.8 77 39.0


User provided reference genes

Program Settings