Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 1.0e-146 523.5 285 100.0
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 5.7e-137 491.1 287 94.4
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 3.0e-114 415.6 285 80.4
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 3.9e-101 372.1 286 75.2
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 5.6e-84 315.1 287 62.7
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 1.4e-82 310.5 284 64.4
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 4.0e-82 308.9 285 64.2
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 1.1e-79 300.8 282 63.1
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 3.5e-78 295.8 295 60.0
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 6.0e-78 295.0 288 60.4
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 1.7e-77 293.5 286 62.6
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 5.1e-77 292.0 287 61.3
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 5.6e-76 288.5 299 60.5
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 5.6e-76 288.5 253 64.8
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 9.6e-76 287.7 292 62.0
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 2.8e-75 286.2 295 60.3
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 4.7e-75 285.4 289 61.9
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 1.1e-74 284.3 293 60.1
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 1.8e-74 283.5 295 60.0
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 2.4e-74 283.1 289 60.6
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 2.0e-73 280.0 251 68.1
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 2.6e-73 279.6 277 60.3
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 1.3e-72 277.3 294 59.5
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 1.7e-72 276.9 298 58.4
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 2.9e-72 276.2 243 68.3
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 8.4e-72 274.6 284 57.4
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 8.4e-72 274.6 296 57.1
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 4.2e-71 272.3 296 56.4
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.2e-70 270.8 293 56.0
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 1.6e-70 270.4 265 60.8
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 1.6e-70 270.4 293 57.7
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 1.7e-69 266.9 296 59.5
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 1.9e-68 263.5 250 61.2
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 1.9e-68 263.5 279 57.7
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 2.5e-68 263.1 207 72.5
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 3.3e-68 262.7 219 65.3
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 4.3e-68 262.3 287 58.5
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 9.6e-68 261.2 296 56.1
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 9.6e-68 261.2 280 56.1
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.3e-67 260.8 285 57.9
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.8e-67 259.6 290 57.9
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.8e-67 259.6 285 57.5
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 3.6e-67 259.2 311 51.1
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 4.8e-67 258.8 288 57.6
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 8.1e-67 258.1 296 55.7
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 1.4e-66 257.3 274 58.4
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 1.8e-66 256.9 280 55.7
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.1e-66 256.1 296 56.1
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 6.9e-66 255.0 239 61.1
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 6.9e-66 255.0 294 53.4
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 9.0e-66 254.6 268 57.8
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 1.5e-65 253.8 287 58.5
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 1.5e-65 253.8 294 53.7
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 4.5e-65 252.3 298 55.0
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 7.6e-65 251.5 263 58.2
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 1.7e-64 250.4 271 56.8
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 2.9e-64 249.6 289 53.3
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 3.8e-64 249.2 286 55.2
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 1.1e-63 247.7 275 56.4
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 3.2e-63 246.1 273 57.1
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.2e-62 244.2 282 54.6
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.2e-62 244.2 282 54.6
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 1.6e-62 243.8 205 67.3
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.6e-62 243.8 298 54.0
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 1.6e-62 243.8 273 53.8
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 4.6e-62 242.3 243 58.4
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 3.9e-61 239.2 271 53.9
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 3.9e-61 239.2 281 54.1
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 5.1e-61 238.8 281 54.1
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 5.1e-61 238.8 219 60.7
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 1.1e-60 237.7 257 56.0
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 1.5e-60 237.3 268 54.5
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 4.3e-60 235.7 250 56.0
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 5.6e-60 235.3 271 53.1
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 5.6e-60 235.3 271 53.1
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 5.6e-60 235.3 271 53.1
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 2.1e-59 233.4 284 54.2
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 2.8e-59 233.0 268 57.1
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 3.7e-59 232.6 256 55.9
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 1.1e-58 231.1 227 62.1
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.4e-58 230.7 285 53.3
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 5.3e-58 228.8 232 58.2
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.2e-57 227.6 283 53.7
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 2.6e-57 226.5 283 51.9
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 3.4e-57 226.1 285 53.3
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 5.8e-57 225.3 261 53.3
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 9.9e-57 224.6 289 50.5
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 2.9e-56 223.0 232 59.1
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 5.5e-55 218.8 237 55.3
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 5.5e-55 218.8 237 55.3
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 9.3e-55 218.0 226 56.6
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 1.2e-54 217.6 292 49.0
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 6.0e-54 215.3 290 50.3
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 1.0e-53 214.5 206 60.7
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 1.3e-53 214.2 207 62.3
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 6.7e-53 211.8 273 52.7
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 1.5e-49 200.7 283 45.2
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 6.5e-48 195.3 191 61.8
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 8.4e-48 194.9 154 66.2
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 3.5e-46 189.5 240 50.4
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 2.5e-44 183.3 266 47.4
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 4.8e-43 179.1 272 44.1
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 1.4e-42 177.6 273 46.2
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 1.8e-42 177.2 143 71.3
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 6.5e-40 168.7 267 43.8
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 2.5e-39 166.8 293 42.3
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 2.7e-38 163.3 286 43.0
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 5.1e-37 159.1 290 42.8
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 4.8e-35 152.5 143 59.4
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 4.1e-34 149.4 227 45.4
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 1.2e-33 147.9 130 65.4
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 4.5e-33 146.0 208 45.2
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 1.4e-31 141.0 211 43.6
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 8.8e-29 131.7 168 51.8
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 8.8e-29 131.7 168 51.8
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 4.8e-27 125.9 143 55.9
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 1.1e-26 124.8 102 65.7
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 3.2e-23 113.2 165 45.5
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 2.7e-22 110.2 204 38.7
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 2.3e-21 107.1 155 49.0
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 6.7e-21 105.5 171 42.1
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 1.1e-20 104.8 233 38.6
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 2.6e-20 103.6 233 38.2
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 3.3e-20 103.2 130 49.2
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 1.7e-19 100.9 176 43.8
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 1.1e-18 98.2 74 71.6
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 7.2e-15 85.5 71 64.8
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 5.2e-13 79.3 129 39.5
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 8.8e-13 78.6 82 57.3
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 2.6e-12 77.0 62 64.5
TAR629G0034 Trochodendron aralioides HOM05D005433 ORTHO05D006675 1.4e-10 71.2 82 56.1
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 2.4e-10 70.5 47 70.2
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 7.7e-09 65.5 172 27.9
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 7.2e-07 58.9 42 71.4
PRCOL_00001575 Prasinoderma coloniale HOM05D005433 ORTHO05D006675 2.7e-06 57.0 175 32.6
EL10Ac1g01129 Beta vulgaris HOM05D005433 ORTHO05D006675 6.1e-06 55.8 35 80.0
Lalb_Chr03g0030791 Lupinus albus HOM05D005433 ORTHO05D006675 8.0e-06 55.5 95 38.9


User provided reference genes

Program Settings