Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 1.5e-39 165.6 80 100.0
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 1.1e-37 159.5 79 94.9
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 4.2e-29 131.0 80 77.5
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 6.1e-28 127.1 81 77.8
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 6.1e-28 127.1 81 77.8
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 6.1e-28 127.1 80 78.8
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 1.4e-27 125.9 81 75.3
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 1.8e-27 125.6 81 76.5
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 1.8e-27 125.6 79 74.7
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 2.3e-27 125.2 81 74.1
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 2.3e-27 125.2 81 74.1
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 3.9e-27 124.4 81 76.5
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 5.1e-27 124.0 81 74.1
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 6.7e-27 123.6 81 74.1
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.5e-26 121.7 81 72.8
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 2.5e-26 121.7 81 77.8
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 2.5e-26 121.7 81 74.1
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 3.3e-26 121.3 81 71.6
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 3.3e-26 121.3 81 71.6
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 4.3e-26 120.9 81 70.4
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 7.4e-26 120.2 82 70.7
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 9.7e-26 119.8 82 70.7
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 9.7e-26 119.8 73 79.5
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.3e-25 119.4 81 75.3
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 1.7e-25 119.0 74 75.7
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 2.8e-25 118.2 81 71.6
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 4.8e-25 117.5 73 78.1
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 4.8e-25 117.5 74 74.3
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.1e-24 116.3 70 78.6
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.4e-24 115.9 81 75.3
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 1.4e-24 115.9 81 75.3
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.4e-24 115.9 80 68.8
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 2.4e-24 115.2 81 70.4
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 3.1e-24 114.8 81 67.9
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 3.1e-24 114.8 81 70.4
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 4.1e-24 114.4 81 70.4
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 4.1e-24 114.4 81 69.1
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 5.3e-24 114.0 79 67.1
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 5.3e-24 114.0 80 70.0
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 6.9e-24 113.6 81 66.7
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 6.9e-24 113.6 80 68.8
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 6.9e-24 113.6 74 73.0
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 9.1e-24 113.2 80 66.2
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 9.1e-24 113.2 80 66.2
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 1.2e-23 112.8 81 69.1
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.5e-23 112.5 73 74.0
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 2.0e-23 112.1 81 70.4
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 2.6e-23 111.7 63 81.0
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 2.6e-23 111.7 81 67.9
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 2.6e-23 111.7 80 66.2
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 2.6e-23 111.7 80 65.0
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 3.4e-23 111.3 81 69.1
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 3.4e-23 111.3 83 68.7
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 4.5e-23 110.9 81 74.1
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 4.5e-23 110.9 81 65.4
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 7.7e-23 110.2 81 66.7
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 7.7e-23 110.2 81 70.4
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 1.0e-22 109.8 70 75.7
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.3e-22 109.4 70 70.0
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 1.7e-22 109.0 81 66.7
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 2.9e-22 108.2 80 62.5
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 2.9e-22 108.2 80 67.5
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 2.9e-22 108.2 63 74.6
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 3.8e-22 107.8 81 65.4
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 3.8e-22 107.8 69 71.0
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 3.8e-22 107.8 81 66.7
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 5.0e-22 107.5 55 83.6
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 6.5e-22 107.1 73 72.6
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 8.5e-22 106.7 81 66.7
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 1.1e-21 106.3 80 62.5
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 1.1e-21 106.3 60 80.0
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 1.4e-21 105.9 66 74.2
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 1.4e-21 105.9 73 69.9
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 1.4e-21 105.9 51 86.3
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 1.4e-21 105.9 81 69.1
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.4e-21 105.9 81 64.2
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.4e-21 105.9 81 65.4
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.9e-21 105.5 66 74.2
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 1.9e-21 105.5 80 61.2
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 1.9e-21 105.5 73 69.9
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 1.9e-21 105.5 78 64.1
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 1.9e-21 105.5 80 66.2
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 2.5e-21 105.1 66 71.2
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 3.2e-21 104.8 65 73.8
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 3.2e-21 104.8 50 90.0
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 3.2e-21 104.8 80 65.0
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 4.2e-21 104.4 80 65.0
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 4.2e-21 104.4 50 90.0
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 5.5e-21 104.0 50 90.0
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 5.5e-21 104.0 65 70.8
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 7.2e-21 103.6 78 64.1
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 7.2e-21 103.6 65 72.3
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 7.2e-21 103.6 72 69.4
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 7.2e-21 103.6 50 90.0
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 9.4e-21 103.2 80 63.8
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 1.2e-20 102.8 80 62.5
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 1.2e-20 102.8 60 75.0
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.2e-20 102.8 78 64.1
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.2e-20 102.8 78 65.4
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 1.6e-20 102.4 50 88.0
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 1.6e-20 102.4 50 88.0
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 2.1e-20 102.1 65 69.2
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 2.1e-20 102.1 83 63.9
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 2.7e-20 101.7 78 64.1
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 2.7e-20 101.7 50 86.0
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.7e-20 101.7 62 75.8
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 3.6e-20 101.3 55 81.8
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 7.9e-20 100.1 63 71.4
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 7.9e-20 100.1 50 84.0
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 1.4e-19 99.4 50 84.0
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 1.4e-19 99.4 63 69.8
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 1.4e-19 99.4 90 57.8
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 1.4e-19 99.4 90 57.8
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 1.4e-19 99.4 78 62.8
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 1.8e-19 99.0 52 82.7
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.8e-19 99.0 66 72.7
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 2.3e-19 98.6 46 91.3
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 3.9e-19 97.8 61 70.5
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 5.1e-19 97.4 50 84.0
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 5.1e-19 97.4 50 82.0
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 5.1e-19 97.4 65 70.8
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 8.8e-19 96.7 79 58.2
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 8.8e-19 96.7 50 82.0
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 8.8e-19 96.7 50 82.0
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 8.8e-19 96.7 50 82.0
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 8.8e-19 96.7 50 82.0
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.1e-18 96.3 50 82.0
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 1.1e-18 96.3 79 58.2
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 1.5e-18 95.9 66 65.2
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 1.5e-18 95.9 50 80.0
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 2.6e-18 95.1 61 75.4
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 3.3e-18 94.7 63 69.8
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 3.3e-18 94.7 46 87.0
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 3.3e-18 94.7 46 87.0
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 4.4e-18 94.4 75 64.0
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 5.7e-18 94.0 50 80.0
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 5.7e-18 94.0 50 80.0
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 9.7e-18 93.2 80 60.0
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.3e-17 92.8 59 72.9
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.3e-17 92.8 70 65.7
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 1.7e-17 92.4 77 61.0
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 2.2e-17 92.0 43 90.7
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 3.1e-16 88.2 70 60.0
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 3.1e-16 88.2 70 60.0
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 4.1e-16 87.8 72 55.6
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 5.3e-16 87.4 48 75.0
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 9.1e-16 86.7 60 60.0
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 9.1e-16 86.7 73 58.9
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 5.9e-15 84.0 42 78.6
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 1.6e-12 75.9 43 72.1
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 1.0e-11 73.2 57 63.2
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 2.0e-10 68.9 58 56.9
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 1.8e-08 62.4 31 80.6
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 8.5e-06 53.5 42 64.3


User provided reference genes

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