Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020578 Carpinus fangiana HOM05D003240 ORTHO05D009426 6.2e-55 218.0 189 100.0
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 2.4e-43 179.5 192 68.8
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 2.6e-37 159.5 194 63.9
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 3.4e-37 159.1 100 80.0
Manes.15G087500 Manihot esculenta HOM05D003240 ORTHO05D009426 4.2e-27 125.6 100 66.0
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 5.4e-27 125.2 103 62.1
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 2.7e-26 122.9 104 60.6
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 2.7e-26 122.9 97 58.8
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 1.8e-25 120.2 112 59.8
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 1.8e-25 120.2 103 62.1
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 1.8e-25 120.2 106 56.6
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 1.1e-24 117.5 103 59.2
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 9.6e-24 114.4 97 54.6
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 2.1e-23 113.2 98 58.2
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 2.1e-23 113.2 98 53.1
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 2.8e-23 112.8 103 59.2
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 1.8e-22 110.2 110 54.5
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 5.3e-22 108.6 101 50.5
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 5.3e-22 108.6 109 54.1
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 9.0e-22 107.8 107 56.1
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 1.2e-21 107.5 101 48.5
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 1.2e-21 107.5 112 53.6
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 1.5e-21 107.1 98 54.1
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 2.6e-21 106.3 109 51.4
TPR.G39028 Trifolium pratense HOM05D003240 ORTHO05D009426 2.6e-21 106.3 99 56.6
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 3.4e-21 105.9 101 48.5
Dinv14922 Davidia involucrata HOM05D003240 ORTHO05D009426 5.8e-21 105.1 101 54.5
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 5.8e-21 105.1 101 47.5
Lj3g0010365 Lotus japonicus HOM05D003240 ORTHO05D009426 5.8e-21 105.1 110 52.7
Lalb_Chr03g0042631 Lupinus albus HOM05D003240 ORTHO05D009426 7.6e-21 104.8 103 57.3
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 9.9e-21 104.4 95 51.6
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 1.3e-20 104.0 112 52.7
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 4.9e-20 102.1 73 64.4
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 6.4e-20 101.7 88 53.4
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 8.4e-20 101.3 105 51.4
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 1.1e-19 100.9 90 56.7
Medtr2g085360 Medicago truncatula HOM05D003240 ORTHO05D009426 1.1e-19 100.9 99 52.5
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 1.9e-19 100.1 94 50.0
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 2.5e-19 99.8 107 55.1
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 2.1e-18 96.7 105 50.5
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 2.7e-18 96.3 116 50.9
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 3.5e-18 95.9 107 55.1
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 6.0e-18 95.1 106 53.8
Hma1.2p1_0898F.1_g234470 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 6.0e-18 95.1 104 53.8
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 7.9e-18 94.7 103 50.5
MBI07_g30192_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 1.0e-17 94.4 98 49.0
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 1.3e-17 94.0 114 47.4
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 2.3e-17 93.2 111 51.4
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 2.3e-17 93.2 103 47.6
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 8.7e-17 91.3 73 57.5
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 8.7e-17 91.3 109 50.5
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 1.1e-16 90.9 104 51.9
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 2.5e-16 89.7 103 47.6
TAR627G0347 Trochodendron aralioides HOM05D003240 ORTHO05D009426 2.5e-16 89.7 75 54.7
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 4.3e-16 89.0 114 50.0
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 5.6e-16 88.6 112 46.4
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 1.3e-15 87.4 104 51.0
Nn4g25258 Nelumbo nucifera HOM05D003240 ORTHO05D009426 1.3e-15 87.4 104 48.1
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 1.6e-15 87.0 76 56.6
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.8e-15 86.3 105 49.5
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.8e-15 86.3 105 49.5
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.8e-15 86.3 113 47.8
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.8e-15 86.3 113 48.7
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.8e-15 86.3 113 48.7
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 6.2e-15 85.1 114 48.2
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 6.2e-15 85.1 114 47.4
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 8.2e-15 84.7 114 47.4
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.1e-14 84.3 114 47.4
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 1.4e-14 84.0 110 45.5
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.4e-14 84.0 113 47.8
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 3.1e-14 82.8 110 44.5
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 3.1e-14 82.8 116 45.7
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 3.1e-14 82.8 185 42.2
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 3.1e-14 82.8 114 47.4
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 3.1e-14 82.8 72 45.8
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 4.0e-14 82.4 117 44.4
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 9.0e-14 81.3 115 44.3
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 4.5e-13 79.0 105 44.8
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 5.8e-13 78.6 115 42.6
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 5.8e-13 78.6 115 42.6
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 7.6e-13 78.2 73 46.6
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 7.6e-13 78.2 58 67.2
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 1.7e-12 77.0 117 41.0
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 2.2e-12 76.6 114 42.1
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 2.2e-12 76.6 115 40.0
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 2.2e-12 76.6 115 40.0
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 2.2e-12 76.6 115 40.0
Nn1g04123 Nelumbo nucifera HOM05D003240 ORTHO05D009426 3.8e-12 75.9 102 46.1
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 3.8e-12 75.9 113 43.4
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 4.9e-12 75.5 83 47.0
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 4.9e-12 75.5 97 44.3
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 1.4e-11 73.9 46 65.2
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.9e-11 73.6 64 54.7
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 2.5e-11 73.2 157 31.8
ATR0737G149 Amborella trichopoda HOM05D003240 ORTHO05D009426 3.2e-11 72.8 57 56.1
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 7.1e-11 71.6 73 46.6
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 1.2e-10 70.9 93 41.9
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 1.6e-10 70.5 162 29.6
PSO541G3864 Papaver somniferum HOM05D003240 ORTHO05D009426 7.9e-10 68.2 89 39.3
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 7.9e-10 68.2 89 39.3


User provided reference genes

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