Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 2.7e-53 212.2 148 100.0
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 2.8e-47 192.2 149 89.9
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 4.0e-41 171.8 149 83.9
Cfa020578 Carpinus fangiana HOM05D003240 ORTHO05D009426 3.1e-38 162.2 100 80.0
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 5.8e-32 141.4 114 64.9
Manes.15G087500 Manihot esculenta HOM05D003240 ORTHO05D009426 9.8e-32 140.6 106 67.0
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 9.8e-32 140.6 152 69.1
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 1.9e-30 136.3 100 57.0
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 1.9e-30 136.3 109 59.6
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 5.4e-30 134.8 108 63.0
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 9.2e-30 134.0 107 59.8
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 9.2e-30 134.0 108 63.9
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 4.6e-29 131.7 106 59.4
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 7.8e-29 131.0 116 58.6
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 1.0e-28 130.6 114 59.6
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 5.0e-28 128.3 108 61.1
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.5e-27 126.7 110 53.6
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 1.5e-27 126.7 114 59.6
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 1.9e-27 126.3 104 52.9
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 1.9e-27 126.3 115 57.4
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 3.3e-27 125.6 110 53.6
Lj3g0010365 Lotus japonicus HOM05D003240 ORTHO05D009426 3.3e-27 125.6 112 57.1
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 7.3e-27 124.4 110 52.7
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 2.1e-26 122.9 102 58.8
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 6.2e-26 121.3 110 57.3
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 2.3e-25 119.4 108 58.3
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 6.8e-25 117.9 119 56.3
Dinv14922 Davidia involucrata HOM05D003240 ORTHO05D009426 1.5e-24 116.7 104 61.5
TPR.G39028 Trifolium pratense HOM05D003240 ORTHO05D009426 2.6e-24 115.9 105 57.1
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 3.4e-24 115.5 97 55.7
Lalb_Chr03g0042631 Lupinus albus HOM05D003240 ORTHO05D009426 3.4e-24 115.5 106 58.5
Hma1.2p1_0898F.1_g234470 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 9.8e-24 114.0 108 58.3
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 1.3e-23 113.6 109 58.7
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 2.2e-23 112.8 109 54.1
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 4.9e-23 111.7 114 52.6
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 8.3e-23 110.9 98 52.0
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 1.4e-22 110.2 117 50.4
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 1.4e-22 110.2 109 55.0
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 4.1e-22 108.6 163 59.5
Medtr2g085360 Medicago truncatula HOM05D003240 ORTHO05D009426 4.1e-22 108.6 105 52.4
MBI07_g30192_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 7.0e-22 107.8 112 52.7
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 1.2e-21 107.1 116 53.4
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 1.6e-21 106.7 110 55.5
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 2.1e-21 106.3 107 54.2
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.1e-21 106.3 117 54.7
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.1e-21 106.3 117 54.7
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.1e-21 106.3 117 54.7
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.1e-21 106.3 117 54.7
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 2.7e-21 105.9 107 54.2
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.7e-21 105.9 117 54.7
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.5e-21 105.5 117 52.1
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 3.5e-21 105.5 117 52.1
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.5e-21 105.5 110 51.8
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 4.6e-21 105.1 105 53.3
Nn4g25258 Nelumbo nucifera HOM05D003240 ORTHO05D009426 7.8e-21 104.4 110 52.7
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 7.8e-21 104.4 106 53.8
TAR627G0347 Trochodendron aralioides HOM05D003240 ORTHO05D009426 7.8e-21 104.4 83 60.2
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 1.0e-20 104.0 61 73.8
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 1.0e-20 104.0 113 50.4
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 1.3e-20 103.6 75 62.7
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 1.3e-20 103.6 106 52.8
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.3e-20 103.6 117 53.8
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 1.7e-20 103.2 106 52.8
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.3e-20 102.8 117 53.0
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.0e-20 102.4 117 51.3
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.0e-20 102.4 117 51.3
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 5.1e-20 101.7 110 52.7
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 8.6e-20 100.9 110 51.8
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 1.1e-19 100.5 113 50.4
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.3e-19 99.0 76 60.5
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 3.6e-18 95.5 113 49.6
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 4.0e-17 92.0 113 47.8
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 5.2e-17 91.7 113 47.8
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 6.8e-17 91.3 117 47.0
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 6.8e-17 91.3 155 58.7
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 1.2e-16 90.5 119 45.4
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 1.2e-16 90.5 118 46.6
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 1.5e-16 90.1 117 41.0
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 3.4e-16 89.0 110 46.4
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 3.4e-16 89.0 100 43.0
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 3.4e-16 89.0 116 42.2
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 3.4e-16 89.0 116 42.2
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 3.4e-16 89.0 157 56.7
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 3.4e-16 89.0 61 70.5
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 4.4e-16 88.6 101 44.6
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 4.4e-16 88.6 118 44.9
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 7.5e-16 87.8 74 59.5
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 9.9e-16 87.4 116 41.4
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 9.9e-16 87.4 116 41.4
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 9.9e-16 87.4 116 41.4
Nn1g04123 Nelumbo nucifera HOM05D003240 ORTHO05D009426 1.3e-15 87.0 107 47.7
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 2.9e-15 85.9 116 43.1
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 6.4e-15 84.7 102 44.1
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 1.9e-14 83.2 109 45.0
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 1.2e-13 80.5 103 41.7
ATR0737G149 Amborella trichopoda HOM05D003240 ORTHO05D009426 2.1e-13 79.7 59 62.7
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 2.7e-13 79.3 96 45.8
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 3.5e-13 79.0 104 43.3
PSO541G3864 Papaver somniferum HOM05D003240 ORTHO05D009426 4.6e-13 78.6 102 43.1
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 1.1e-11 73.9 49 61.2
unitig_37.g12571 Utricularia gibba HOM05D003240 ORTHO05D009426 3.8e-07 58.9 93 38.7
Rhsim06G0199500 Rhododendron simsii HOM05D003240 ORTHO05D009426 4.9e-07 58.5 116 36.2
Solyc02g036220.1 Solanum lycopersicum HOM05D002014 ORTHO05D001958 2.4e-06 56.2 92 38.0
HPP92_020058 Vanilla planifolia HOM05D003240 ORTHO05D009426 7.1e-06 54.7 60 48.3


User provided reference genes

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