Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020564 Carpinus fangiana HOM05D007784 ORTHO05D008654 2.3e-112 409.1 229 100.0
QL08p022546 Quercus lobata HOM05D007784 ORTHO05D008654 1.0e-67 260.8 234 69.2
CiPaw.11G171500 Carya illinoinensis HOM05D007784 ORTHO05D008654 3.1e-61 239.2 241 66.8
Haze_09448 Corylus avellana HOM05D007784 ORTHO05D008654 1.3e-54 217.2 139 97.8
CiPaw.12G119800 Carya illinoinensis HOM05D007784 ORTHO05D008654 3.6e-49 199.1 224 66.5
FAN21G3158 Fragaria x ananassa HOM05D007784 ORTHO05D008654 1.5e-47 193.7 234 58.1
Thecc.07G095100 Theobroma cacao HOM05D007784 ORTHO05D008654 1.5e-47 193.7 231 55.0
Gohir.D01G048300 Gossypium hirsutum HOM05D007784 ORTHO05D008654 5.7e-47 191.8 228 57.0
Gorai.002G068100 Gossypium raimondii HOM05D007784 ORTHO05D008654 5.7e-47 191.8 228 57.0
Ciclev10010505m.g Citrus clementina HOM05D007784 ORTHO05D008654 1.7e-46 190.3 235 60.0
Duzib213G0720 Durio zibethinus HOM05D007784 ORTHO05D008654 1.7e-46 190.3 223 57.8
Gohir.A01G061700 Gossypium hirsutum HOM05D007784 ORTHO05D008654 1.7e-46 190.3 229 57.6
Duzib268G0159 Durio zibethinus HOM05D007784 ORTHO05D008654 2.2e-46 189.9 232 56.5
FvH4_3g19630 Fragaria vesca HOM05D007784 ORTHO05D008654 2.2e-46 189.9 234 57.3
FAN11G2265 Fragaria x ananassa HOM05D007784 ORTHO05D008654 2.2e-46 189.9 234 57.3
Potri.001G398000 Populus trichocarpa HOM05D007784 ORTHO05D008654 2.2e-46 189.9 234 55.6
Potri.011G116600 Populus trichocarpa HOM05D007784 ORTHO05D008654 1.4e-45 187.2 233 58.4
FAN25G3654 Fragaria x ananassa HOM05D007784 ORTHO05D008654 2.9e-43 179.5 234 56.0
RcHm_v2.0_Chr5g0032821 Rosa chinensis HOM05D007784 ORTHO05D008654 2.5e-42 176.4 236 53.4
Sabra11G0102100 Salix brachista HOM05D007784 ORTHO05D008654 2.5e-42 176.4 237 55.3
COL.COLO4_36703 Corchorus olitorius HOM05D007784 ORTHO05D008654 5.6e-42 175.3 228 53.9
Cpa.g.c36086 Carica papaya HOM05D007784 ORTHO05D008654 9.5e-42 174.5 242 54.1
MD03G1230800 Malus domestica HOM05D007784 ORTHO05D008654 2.1e-41 173.3 240 58.8
FAN16G2579 Fragaria x ananassa HOM05D007784 ORTHO05D008654 4.7e-41 172.2 231 51.9
Prupe.4G177000 Prunus persica HOM05D007784 ORTHO05D008654 4.7e-41 172.2 236 59.3
ClCG11G017920 Citrullus lanatus HOM05D007784 ORTHO05D008654 8.9e-40 167.9 248 48.8
Sabra16G0260800 Salix brachista HOM05D007784 ORTHO05D008654 7.5e-39 164.9 233 49.4
Manes.15G088900 Manihot esculenta HOM05D007784 ORTHO05D008654 9.8e-39 164.5 240 56.7
Manes.03G106700 Manihot esculenta HOM05D007784 ORTHO05D008654 1.1e-37 161.0 236 55.1
MELO3C025600.2 Cucumis melo HOM05D007784 ORTHO05D008654 3.9e-35 152.5 251 44.6
Gohir.D13G151926 Gossypium hirsutum HOM05D007784 ORTHO05D008654 3.9e-35 152.5 224 53.1
PGR031G1623 Punica granatum HOM05D007784 ORTHO05D008654 6.6e-35 151.8 239 51.9
Lalb_Chr03g0030731 Lupinus albus HOM05D007784 ORTHO05D008654 4.3e-34 149.1 237 47.7
Atru.chr2.2433 Acer truncatum HOM05D007784 ORTHO05D008654 1.2e-33 147.5 266 48.5
CSS0002410 Camellia sinensis var. sinensis HOM05D007784 ORTHO05D008654 1.6e-33 147.1 233 49.8
CANSAT56G4083 Cannabis sativa HOM05D007784 ORTHO05D008654 1.6e-33 147.1 270 49.6
Hma1.2p1_0387F.1_g141980 Hydrangea macrophylla HOM05D007784 ORTHO05D008654 7.5e-31 138.3 232 42.2
CsaV3_4G033550 Cucumis sativus L. HOM05D007784 ORTHO05D008654 2.9e-30 136.3 250 47.6
Lj3g0015921 Lotus japonicus HOM05D007784 ORTHO05D008654 3.7e-30 136.0 234 48.7
Psat4g131560 Pisum sativum HOM05D007784 ORTHO05D008654 1.4e-29 134.0 217 43.3
Rhsim06G0201400 Rhododendron simsii HOM05D007784 ORTHO05D008654 1.2e-28 131.0 252 50.4
MSTRG.15239 Avicennia marina HOM05D007784 ORTHO05D008654 3.5e-28 129.4 215 48.8
Actinidia09697 Actinidia chinensis HOM05D007784 ORTHO05D008654 4.6e-28 129.0 219 48.9
Gorai.013G169700 Gossypium raimondii HOM05D007784 ORTHO05D008654 4.6e-28 129.0 175 58.3
Duzib170G0657 Durio zibethinus HOM05D007784 ORTHO05D008654 6.0e-28 128.6 214 50.9
Phvul.011G165000 Phaseolus vulgaris HOM05D007784 ORTHO05D008654 2.3e-27 126.7 216 49.5
PGSC0003DMG400012442 Solanum tuberosum HOM05D007784 ORTHO05D008654 8.6e-27 124.8 247 47.4
VMungo1127G1039 Vigna mungo HOM05D007784 ORTHO05D008654 2.5e-26 123.2 225 43.6
TAR627G0175 Trochodendron aralioides HOM05D007784 ORTHO05D008654 7.3e-26 121.7 260 46.5
Cc05_g11830 Coffea canephora HOM05D007784 ORTHO05D008654 9.5e-26 121.3 240 43.3
Glyma.06G238300 Glycine max HOM05D007784 ORTHO05D008654 8.1e-25 118.2 229 43.7
Glyma.12G163035 Glycine max HOM05D007784 ORTHO05D008654 8.1e-25 118.2 227 42.7
Lalb_Chr01g0006591 Lupinus albus HOM05D007784 ORTHO05D008654 1.1e-24 117.9 228 42.1
Oeu051079.1 Olea europaea HOM05D007784 ORTHO05D008654 1.8e-24 117.1 216 45.8
TWI38G0880 Tripterygium wilfordii HOM05D007784 ORTHO05D008654 5.2e-24 115.5 226 45.1
Nn1g04167 Nelumbo nucifera HOM05D007784 ORTHO05D008654 1.7e-22 110.5 235 46.8
Aqoxy1G02344 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 3.7e-22 109.4 205 45.9
Aqoxy5G00008 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 4.9e-22 109.0 205 45.9
TAR627G0444 Trochodendron aralioides HOM05D007784 ORTHO05D008654 1.1e-21 107.8 260 43.1
Medtr0598s0020 Medicago truncatula HOM05D007784 ORTHO05D008654 1.4e-21 107.5 165 53.3
Sopen07g031150 Solanum pennellii HOM05D007784 ORTHO05D008654 1.9e-21 107.1 214 49.5
Nn1g06458 Nelumbo nucifera HOM05D007784 ORTHO05D008654 2.4e-21 106.7 220 38.2
Solyc07g062960.1 Solanum lycopersicum HOM05D007784 ORTHO05D008654 2.4e-21 106.7 222 48.2
Peaxi162Scf00069g01710 Petunia axillaris HOM05D007784 ORTHO05D008654 7.1e-21 105.1 198 40.9
PGR083G0236 Punica granatum HOM05D007784 ORTHO05D008654 7.1e-21 105.1 213 36.2
CAN.G162.41 Capsicum annuum HOM05D007784 ORTHO05D008654 1.6e-20 104.0 237 38.8
TPR.G18874 Trifolium pratense HOM05D007784 ORTHO05D008654 7.8e-20 101.7 167 46.1
Ca_23050_v3 Cicer arietinum L. HOM05D007784 ORTHO05D008654 3.0e-19 99.8 207 39.1
Dinv14932 Davidia involucrata HOM05D007784 ORTHO05D008654 3.0e-19 99.8 229 35.4
AL3G27640 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 1.2e-17 94.4 225 37.8
CARHR090230 Cardamine hirsuta HOM05D009851 ORTHO05D008654 5.2e-16 89.0 216 38.0
PSO541G4378 Papaver somniferum HOM05D007784 ORTHO05D008654 5.2e-16 89.0 242 42.1
Migut.M00785 Erythranthe guttata HOM05D007784 ORTHO05D008654 2.6e-15 86.7 217 44.2
AUR62036175 Chenopodium quinoa HOM05D007784 ORTHO05D008654 4.4e-15 85.9 239 32.6
Sed0023140 Sechium edule HOM05D007784 ORTHO05D008654 5.8e-15 85.5 58 75.9
BcaB06g29549 Brassica carinata HOM05D009851 ORTHO05D008654 1.3e-14 84.3 207 42.0
Sc16g0007130 Simmondsia chinensis HOM05D007784 ORTHO05D008654 2.2e-14 83.6 232 32.3
Carub.0003s1490 Capsella rubella HOM05D009851 ORTHO05D008654 3.8e-14 82.8 215 45.1
BcaB06g29548 Brassica carinata HOM05D009851 ORTHO05D008654 6.4e-14 82.0 219 40.2
Sp3g13450 Schrenkiella parvula HOM05D009851 ORTHO05D008654 1.4e-13 80.9 213 42.7
EL10Ac4g08222 Beta vulgaris HOM05D007784 ORTHO05D008654 1.9e-13 80.5 256 41.4
DCAR_017127 Daucus carota HOM05D007784 ORTHO05D008654 1.9e-13 80.5 207 38.2
AT3G15250 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 4.2e-13 79.3 224 37.5
AUR62019455 Chenopodium quinoa HOM05D007784 ORTHO05D008654 1.2e-12 77.8 267 38.2
ECA234G3343 Erigeron canadensis HOM05D007784 ORTHO05D008654 1.6e-12 77.4 210 36.2
A05p34230 Brassica napus HOM05D009851 ORTHO05D008654 2.7e-12 76.6 195 40.0
BraA05t22243Z Brassica rapa HOM05D009851 ORTHO05D008654 2.7e-12 76.6 195 40.0
Thhalv10021913m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 4.6e-12 75.9 220 38.2
THA.LOC104810461 Tarenaya hassleriana HOM05D009851 ORTHO05D008654 4.6e-12 75.9 264 33.0
C05p51990 Brassica napus HOM05D009851 ORTHO05D008654 6.0e-12 75.5 195 37.4
BolC5t33884H Brassica oleracea HOM05D009851 ORTHO05D008654 3.9e-11 72.8 195 38.5
AL1G61530 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 6.6e-11 72.0 65 60.0
AT1G53163 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 6.6e-11 72.0 85 54.1
Rhsim04G0022200 Rhododendron simsii HOM05D058066 ORTHO05D008654 6.6e-11 72.0 95 44.2
Eucgr.F03301 Eucalyptus grandis HOM05D007784 ORTHO05D008654 8.7e-11 71.6 136 42.6
Carub.0001s4232 Capsella rubella HOM05D009851 ORTHO05D008654 5.6e-10 68.9 68 55.9
A06p01160 Brassica napus HOM05D009851 ORTHO05D008654 7.3e-10 68.6 262 29.4
BcaC08g43508 Brassica carinata HOM05D009851 ORTHO05D008654 9.6e-10 68.2 261 29.9
C06p08940 Brassica napus HOM05D009851 ORTHO05D008654 9.6e-10 68.2 261 29.9
BolC6t35972H Brassica oleracea HOM05D009851 ORTHO05D008654 9.6e-10 68.2 261 29.9
BraA06t23343Z Brassica rapa HOM05D009851 ORTHO05D008654 2.1e-09 67.0 262 29.4
DCAR_019565 Daucus carota HOM05D007784 ORTHO05D008654 3.6e-09 66.2 224 38.4
BcaB03g11679 Brassica carinata HOM05D009851 ORTHO05D008654 4.8e-09 65.9 53 67.9
Sp1g39710 Schrenkiella parvula HOM05D009851 ORTHO05D008654 6.2e-09 65.5 277 30.7
SalBow8G3696 Salvia bowleyana HOM05D007784 ORTHO05D008654 1.1e-08 64.7 85 45.9
BcaB07g33353 Brassica carinata HOM05D009851 ORTHO05D008654 3.1e-08 63.2 268 28.4
Actinidia12799 Actinidia chinensis HOM05D000223 ORTHO05D000736 9.0e-08 61.6 151 40.4
Thhalv10012165m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 9.0e-08 61.6 284 27.5
Ah.06g184500 Amaranthus hybridus HOM05D007784 ORTHO05D008654 2.0e-07 60.5 242 30.6
CARHR043380 Cardamine hirsuta HOM05D009851 ORTHO05D008654 2.0e-07 60.5 66 51.5
SGA_v2.0_scaffold73G24239 Striga asiatica HOM05D007784 ORTHO05D008654 5.8e-07 58.9 195 37.9
ATR0150G022 Amborella trichopoda HOM05D007784 ORTHO05D008654 9.9e-07 58.2 211 39.8
DCAR_019564 Daucus carota HOM05D007784 ORTHO05D008654 3.8e-06 56.2 216 37.5


User provided reference genes

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