Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 6.2e-53 210.7 118 100.0
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 3.5e-40 168.3 124 77.4
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 1.2e-24 116.7 122 58.2
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 1.0e-23 113.6 115 58.3
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 4.8e-21 104.8 118 53.4
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 1.1e-20 103.6 124 54.0
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 5.3e-20 101.3 68 70.6
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 1.5e-19 99.8 117 49.6
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 1.5e-19 99.8 111 55.0
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 4.5e-19 98.2 71 66.2
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 9.9e-19 97.1 68 70.6
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 1.3e-18 96.7 70 65.7
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 1.7e-18 96.3 112 49.1
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 1.7e-18 96.3 116 56.9
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 2.2e-18 95.9 66 66.7
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 2.2e-18 95.9 89 53.9
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 2.2e-18 95.9 89 53.9
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 2.2e-18 95.9 89 53.9
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 2.9e-18 95.5 89 53.9
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 2.9e-18 95.5 89 53.9
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 2.9e-18 95.5 66 66.7
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 4.9e-18 94.7 97 52.6
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 4.9e-18 94.7 109 49.5
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 6.4e-18 94.4 66 65.2
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 6.4e-18 94.4 67 70.1
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 8.4e-18 94.0 116 47.4
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 1.4e-17 93.2 66 65.2
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 1.4e-17 93.2 109 51.4
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 1.9e-17 92.8 89 58.4
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 2.4e-17 92.4 69 63.8
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 2.4e-17 92.4 68 72.1
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 3.2e-17 92.0 109 49.5
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 4.2e-17 91.7 100 53.0
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 4.2e-17 91.7 100 53.0
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 5.4e-17 91.3 66 63.6
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 5.4e-17 91.3 100 51.0
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 7.1e-17 90.9 109 49.5
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 7.1e-17 90.9 93 58.1
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 7.1e-17 90.9 112 46.4
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 7.1e-17 90.9 117 49.6
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 9.3e-17 90.5 66 63.6
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 9.3e-17 90.5 121 45.5
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 2.7e-16 89.0 109 49.5
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 2.7e-16 89.0 109 49.5
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 2.7e-16 89.0 109 49.5
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 2.7e-16 89.0 89 56.2
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 2.7e-16 89.0 117 45.3
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 6.0e-16 87.8 109 48.6
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 7.9e-16 87.4 68 60.3
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 7.9e-16 87.4 118 42.4
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 2.3e-15 85.9 70 61.4
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 3.0e-15 85.5 112 42.0
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 3.0e-15 85.5 112 42.0
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 3.9e-15 85.1 65 61.5
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 3.9e-15 85.1 65 61.5
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 3.9e-15 85.1 65 61.5
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 8.7e-15 84.0 68 61.8
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 9.6e-14 80.5 63 58.7
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 1.6e-13 79.7 111 44.1
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 6.2e-13 77.8 70 58.6
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 1.1e-12 77.0 70 58.6
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 1.1e-12 77.0 70 58.6
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 1.1e-12 77.0 70 58.6
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 3.1e-12 75.5 67 58.2
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 3.1e-12 75.5 67 58.2
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 5.3e-12 74.7 123 41.5
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 5.3e-12 74.7 73 58.9
Migut.M00865 Erythranthe guttata HOM05D023068 ORTHO05D009506 3.8e-10 68.6 66 54.5
BcaC09g48515 Brassica carinata HOM05D007708 ORTHO05D009506 4.9e-10 68.2 65 50.8
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 4.9e-10 68.2 50 72.0
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 6.4e-10 67.8 70 58.6
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 1.1e-09 67.0 61 60.7
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 3.2e-09 65.5 46 63.0
Sed0014711 Sechium edule HOM05D007708 ORTHO05D009506 5.5e-09 64.7 48 70.8
DCAR_013081 Daucus carota HOM05D007708 ORTHO05D009506 1.6e-08 63.2 50 64.0
Sed0019748 Sechium edule HOM05D007708 ORTHO05D009506 2.7e-08 62.4 53 60.4
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 3.5e-08 62.0 46 67.4
Sc16g0006840 Simmondsia chinensis HOM05D007708 ORTHO05D009506 3.5e-08 62.0 54 64.8
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 4.6e-08 61.6 46 67.4
Cc05_g12520 Coffea canephora HOM05D007708 ORTHO05D009506 1.0e-07 60.5 40 67.5
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 1.0e-07 60.5 53 60.4
Lsat_1_v5_gn_5_7381 Lactuca sativa HOM05D007708 ORTHO05D009506 1.8e-07 59.7 41 68.3
AUR62015628 Chenopodium quinoa HOM05D023068 ORTHO05D009506 5.1e-07 58.2 46 58.7
AUR62029333 Chenopodium quinoa HOM05D023068 ORTHO05D009506 5.1e-07 58.2 46 58.7
Aqoxy1G02627 Aquilegia oxysepala HOM05D007708 ORTHO05D009506 1.1e-06 57.0 114 35.1
Nitab4.5_0000662g0060 Nicotiana tabacum HOM05D007708 ORTHO05D009506 1.1e-06 57.0 77 41.6
PGSC0003DMG400040761 Solanum tuberosum HOM05D007708 ORTHO05D009506 1.1e-06 57.0 41 61.0
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 2.5e-06 55.8 111 37.8
Nn3g17047 Nelumbo nucifera HOM05D007708 ORTHO05D009506 2.5e-06 55.8 61 52.5
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 4.3e-06 55.1 73 49.3
Lalb_Chr19g0134351 Lupinus albus HOM05D007708 ORTHO05D009506 7.4e-06 54.3 44 63.6
Nitab4.5_0001610g0030 Nicotiana tabacum HOM05D007708 ORTHO05D009506 7.4e-06 54.3 37 59.5
Nn2g10233 Nelumbo nucifera HOM05D007708 ORTHO05D009506 9.6e-06 53.9 64 56.2


User provided reference genes

Program Settings