Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 4.9e-196 687.6 337 100.0
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 1.5e-176 622.9 335 90.4
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 5.3e-174 614.4 335 88.7
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 2.2e-172 609.0 346 87.6
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 7.9e-170 600.5 337 85.8
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 6.9e-166 587.4 337 84.9
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 7.6e-165 583.9 337 84.3
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 2.2e-164 582.4 335 84.2
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 3.8e-164 581.6 337 82.8
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 1.4e-163 579.7 337 81.9
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 4.2e-163 578.2 337 84.3
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 2.1e-162 575.9 335 83.9
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 4.6e-162 574.7 331 82.2
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.8e-161 572.8 337 82.8
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 3.0e-161 572.0 335 82.4
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 3.0e-161 572.0 335 82.4
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 5.1e-161 571.2 337 81.0
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 8.7e-161 570.5 337 81.0
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 1.1e-160 570.1 337 81.9
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.3e-159 566.6 337 80.7
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 1.6e-159 566.2 337 82.5
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 6.3e-159 564.3 338 79.6
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 1.1e-158 563.5 337 78.9
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.1e-158 563.5 337 78.6
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.8e-158 562.8 337 79.8
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 3.1e-158 562.0 335 80.6
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 3.1e-158 562.0 337 81.0
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 3.1e-158 562.0 337 81.0
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 4.1e-158 561.6 337 80.4
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 6.9e-158 560.8 337 81.0
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 4.5e-157 558.1 336 78.9
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 7.7e-157 557.4 337 80.1
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 7.7e-157 557.4 333 80.2
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 1.0e-156 557.0 339 80.2
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.0e-156 557.0 337 80.4
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 1.3e-156 556.6 336 78.3
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 2.2e-156 555.8 337 79.5
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 5.0e-156 554.7 337 78.3
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 1.1e-155 553.5 337 79.8
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 5.5e-155 551.2 337 79.2
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 5.5e-155 551.2 337 79.2
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 9.4e-155 550.4 337 77.4
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 9.4e-155 550.4 328 80.5
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 1.6e-154 549.7 337 78.9
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.8e-153 546.2 337 78.9
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 6.7e-153 544.3 337 78.3
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 7.4e-152 540.8 337 75.4
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 1.3e-151 540.0 338 78.7
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 1.7e-151 539.7 334 76.9
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 2.8e-151 538.9 338 78.1
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 3.7e-151 538.5 335 77.6
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 8.2e-151 537.3 336 76.2
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 3.1e-150 535.4 337 75.7
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 4.1e-150 535.0 337 74.8
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 2.6e-149 532.3 339 76.7
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 3.4e-149 531.9 337 75.1
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 1.0e-148 530.4 337 75.1
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 1.0e-148 530.4 337 74.8
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 2.2e-148 529.3 335 76.7
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 6.5e-148 527.7 341 74.5
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 8.5e-148 527.3 337 74.8
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 1.4e-147 526.6 334 75.1
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 1.9e-147 526.2 337 74.2
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.2e-147 525.0 330 76.4
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.2e-146 523.5 337 74.2
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 3.6e-146 521.9 340 75.3
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 1.0e-145 520.4 337 75.4
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 2.3e-145 519.2 335 73.4
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 5.1e-145 518.1 330 74.5
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 6.7e-145 517.7 337 74.2
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 6.7e-145 517.7 337 74.2
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 8.8e-145 517.3 333 73.0
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 3.3e-144 515.4 332 74.4
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 5.7e-144 514.6 337 73.0
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 2.8e-143 512.3 334 73.1
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 3.1e-142 508.8 334 74.3
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 9.1e-142 507.3 337 72.4
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 2.0e-141 506.1 331 72.5
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 2.0e-141 506.1 334 74.0
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.6e-141 505.8 338 72.8
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 3.5e-141 505.4 330 71.8
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 4.5e-141 505.0 335 73.4
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.0e-140 503.8 337 71.5
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 5.0e-140 501.5 339 70.5
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.9e-139 499.6 337 70.6
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 3.2e-139 498.8 333 73.9
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 1.8e-137 493.0 311 74.9
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 6.7e-137 491.1 345 69.3
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 8.8e-137 490.7 337 72.1
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 8.8e-137 490.7 337 68.8
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 8.8e-137 490.7 335 73.7
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.1e-134 483.8 337 73.6
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 1.8e-134 483.0 338 68.0
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 6.5e-132 474.6 330 67.3
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 2.5e-131 472.6 336 70.2
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 2.5e-131 472.6 339 68.4
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 5.5e-131 471.5 333 68.5
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 3.0e-129 465.7 338 66.0
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 6.8e-129 464.5 337 66.5
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 6.8e-129 464.5 328 67.4
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 4.4e-128 461.8 329 67.2
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 7.0e-126 454.5 289 76.1
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 1.2e-125 453.8 334 65.0
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 3.5e-125 452.2 337 64.4
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 7.7e-125 451.1 337 64.7
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 3.8e-124 448.7 328 64.6
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 5.0e-124 448.4 328 64.3
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 1.2e-122 443.7 289 73.0
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 1.3e-119 433.7 329 63.8
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 1.3e-119 433.7 330 63.3
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 1.7e-119 433.3 322 67.7
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 5.4e-118 428.3 377 58.1
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 9.1e-118 427.6 330 63.0
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.7e-117 426.0 334 65.9
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 1.7e-116 423.3 332 62.0
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 2.3e-116 422.9 315 64.1
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.5e-115 420.2 255 76.5
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 1.6e-114 416.8 328 64.0
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 1.1e-110 404.1 261 75.5
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 1.1e-97 360.9 217 82.0
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 4.1e-94 349.0 209 82.3
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.0e-92 344.4 341 51.9
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 2.3e-92 343.2 385 49.4
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 1.5e-91 340.5 315 57.1
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 9.5e-91 337.8 250 71.2
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.1e-89 334.3 277 59.9
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 1.1e-86 324.3 345 51.6
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 1.2e-85 320.9 349 49.9
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 1.3e-84 317.4 339 50.4
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.4e-78 296.6 192 71.4
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 1.0e-76 291.2 405 42.2
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 3.1e-73 279.6 276 53.6
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 1.8e-65 253.8 184 69.0
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 2.5e-59 233.4 189 56.6
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 8.1e-58 228.4 155 69.7
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 5.5e-54 215.7 337 42.7
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 7.9e-53 211.8 378 35.2
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 1.4e-46 191.0 134 69.4
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 2.7e-45 186.8 143 62.2
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 1.3e-44 184.5 249 43.0
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 2.3e-44 183.7 156 59.6
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 4.5e-40 169.5 138 60.9
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 4.5e-40 169.5 138 60.9
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 2.2e-34 150.6 109 71.6
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 1.8e-33 147.5 89 79.8
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 1.4e-30 137.9 91 69.2
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 2.1e-29 134.0 152 48.0
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 1.5e-22 111.3 407 26.0
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 1.5e-19 101.3 66 72.7
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 3.1e-17 93.6 66 69.7
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 6.5e-15 85.9 77 55.8
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.6e-11 73.9 39 84.6
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 2.2e-10 70.9 58 63.8
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 7.0e-09 65.9 51 66.7
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 5.9e-08 62.8 71 46.5
DCAR_004803 Daucus carota HOM05D019807 ORTHO05D005566 1.7e-07 61.2 34 79.4


User provided reference genes

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