Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 2540.4 1263 100.0
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 2368.2 1250 95.0
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 2278.1 1263 88.9
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 2143.2 1521 73.8
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2127.8 1263 83.1
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2125.9 1263 83.1
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2125.5 1263 82.9
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 2124.4 1263 83.2
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 2121.7 1263 83.3
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2111.3 1263 83.1
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 2107.4 1263 82.3
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 2105.1 1263 82.1
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 2104.7 1264 81.9
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2098.6 1270 81.7
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 2085.1 1264 80.8
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2078.5 1263 80.5
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2072.0 1270 80.9
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 2069.7 1261 80.4
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2067.7 1263 81.5
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 2065.8 1265 80.5
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2065.4 1279 80.7
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 2061.2 1263 80.8
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 2060.8 1263 80.4
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 2060.0 1264 80.9
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 2058.5 1263 80.3
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 2056.2 1263 81.0
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2054.6 1263 80.9
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2053.9 1263 80.8
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2051.2 1263 80.8
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 2042.7 1265 80.2
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 2035.4 1258 80.0
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 2027.3 1303 77.3
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 2024.6 1262 80.2
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 2023.1 1263 79.2
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 2021.9 1261 79.5
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 2017.3 1261 79.6
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 2015.0 1261 79.3
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 2011.1 1286 77.5
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 2001.5 1264 78.3
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1990.7 1261 78.4
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1983.4 1332 75.3
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1979.9 1277 77.3
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1979.5 1267 76.8
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1979.5 1267 76.8
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1973.7 1265 77.8
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1967.2 1262 76.1
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1966.4 1261 77.1
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1961.4 1294 74.6
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1956.0 1261 77.8
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1956.0 1263 77.4
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1953.3 1263 76.3
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1952.2 1263 75.6
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1951.8 1287 75.8
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1948.7 1263 75.3
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1946.4 1263 75.9
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1944.1 1263 75.8
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1942.2 1265 75.9
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1941.4 1263 75.1
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1937.2 1265 75.5
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1937.2 1267 75.8
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1937.2 1264 75.6
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1935.6 1262 75.2
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1932.9 1263 75.2
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1927.1 1263 75.1
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1924.4 1263 75.1
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1923.7 1246 75.8
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1922.9 1266 75.0
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1920.6 1265 74.7
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1920.2 1261 76.3
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1917.9 1266 74.4
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1915.6 1266 74.5
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1915.2 1266 74.5
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1914.8 1276 76.3
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1914.4 1265 74.4
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1913.7 1265 74.9
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1912.5 1267 74.5
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1912.5 1272 74.1
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1908.3 1272 73.4
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1907.9 1273 73.6
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1894.0 1266 73.9
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1889.8 1265 73.6
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1888.6 1265 73.8
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1885.2 1266 73.5
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1884.0 1266 73.5
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1884.0 1269 73.8
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1879.8 1175 79.9
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1860.9 1248 73.3
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1857.4 1186 77.7
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1832.0 1333 69.5
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1794.2 1260 70.9
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1791.9 1245 72.3
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1756.9 1265 68.1
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1715.3 1038 81.5
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1655.2 1096 74.5
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1654.0 1081 75.2
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1639.0 1268 64.5
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1635.5 1235 65.8
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1634.4 1011 80.6
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1623.6 1056 76.4
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1574.3 1065 73.6
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1567.0 1035 74.6
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1531.2 929 81.8
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1499.2 1102 69.7
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1472.6 1016 72.5
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1416.0 859 81.4
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1301.6 1393 49.9
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1217.6 1363 49.3
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1216.4 781 77.6
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1215.3 1266 53.9
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1127.1 750 73.3
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 0.0e+00 1117.4 868 65.0
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 0.0e+00 1085.5 1015 58.5
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 1.4e-291 1006.9 1166 46.5
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 3.2e-272 942.6 595 79.2
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 5.6e-253 878.6 855 56.5
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 9.0e-251 871.3 539 80.0
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 2.8e-212 743.4 1434 33.8
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 3.2e-208 729.9 454 78.2
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 3.6e-207 726.5 445 80.9
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.3e-168 597.0 489 61.6
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 1.3e-156 558.5 313 86.3
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 1.1e-118 432.6 316 68.0
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 3.4e-101 374.4 205 88.8
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.0e-97 362.8 321 59.8
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 5.0e-92 344.0 372 49.7
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.5e-88 332.4 194 79.9
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 3.5e-85 321.2 214 75.7
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 1.0e-84 319.7 256 60.9
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 1.1e-83 316.2 210 75.7
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 7.5e-80 303.5 172 84.3
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 1.2e-77 296.2 159 91.8
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.7e-74 285.0 262 55.3
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 5.7e-72 277.3 260 57.7
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 5.7e-72 277.3 260 57.7
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 5.7e-72 277.3 260 57.7
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 4.9e-71 274.2 152 86.2
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 7.7e-69 266.9 208 65.4
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 2.5e-67 261.9 180 69.4
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 7.2e-67 260.4 452 35.2
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.2e-64 253.1 166 75.9
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 7.8e-61 240.4 154 75.3
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.3e-55 223.0 132 78.0
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 7.8e-53 213.8 150 69.3
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 2.8e-50 205.3 174 59.2
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.3e-49 202.2 136 68.4
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.7e-47 196.1 109 83.5
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 3.2e-46 191.8 109 82.6
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 6.0e-45 187.6 109 81.7
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 6.0e-45 187.6 109 81.7
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 7.3e-43 180.6 109 79.8
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.6e-42 178.3 120 73.3
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 8.1e-42 177.2 126 70.6
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 2.0e-40 172.6 111 75.7
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.1e-37 162.5 98 77.6
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 3.5e-37 161.8 102 79.4
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.6e-34 151.8 98 78.6
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 1.5e-32 146.4 124 62.9
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.3e-31 143.3 81 79.0
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.7e-29 135.6 78 76.9
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 6.9e-25 120.9 120 53.3
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 9.0e-25 120.6 65 84.6
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.5e-24 119.8 87 65.5
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 4.6e-21 108.2 72 70.8
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 1.3e-20 106.7 107 45.8
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.3e-19 102.1 62 77.4
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 3.6e-18 98.6 57 78.9
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.1e-17 97.1 52 78.8
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 6.9e-17 94.4 585 23.6
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 5.5e-14 84.7 81 54.3
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 2.7e-13 82.4 45 84.4
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 9.6e-11 73.9 99 43.4
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.8e-09 69.7 69 46.4
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 3.4e-08 65.5 380 21.8
ATR0693G286 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.1e-06 60.5 40 72.5
SEGI_32398 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.1e-06 60.5 66 45.5
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 1.4e-06 60.1 52 59.6
ATR0693G070 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.5e-06 59.3 46 58.7


User provided reference genes

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