Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 6.9e-96 354.0 181 100.0
Haze_09525 Corylus avellana HOM05D008666 ORTHO05D009871 2.0e-26 123.2 148 53.4
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 4.9e-25 118.6 77 80.5
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 1.0e-22 110.9 81 72.8
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 1.3e-22 110.5 77 76.6
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 1.7e-22 110.2 81 71.6
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 5.1e-22 108.6 81 70.4
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.1e-21 107.5 81 70.4
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 1.1e-21 107.5 81 72.8
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 2.1e-20 103.2 82 65.9
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 4.7e-20 102.1 82 65.9
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 4.7e-20 102.1 80 70.0
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 6.2e-20 101.7 76 69.7
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 1.4e-19 100.5 82 65.9
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 3.1e-19 99.4 79 68.4
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 3.1e-19 99.4 79 68.4
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 4.0e-19 99.0 81 66.7
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 4.0e-19 99.0 80 63.8
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 1.2e-18 97.4 77 67.5
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 1.2e-18 97.4 83 66.3
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 1.5e-18 97.1 83 65.1
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 2.0e-18 96.7 79 64.6
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 2.0e-18 96.7 82 65.9
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 2.6e-18 96.3 77 64.9
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 2.6e-18 96.3 91 60.4
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 3.4e-18 95.9 89 61.8
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 9.9e-18 94.4 80 61.2
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 9.9e-18 94.4 68 73.5
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 1.7e-17 93.6 80 66.2
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 1.7e-17 93.6 77 64.9
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 2.2e-17 93.2 80 65.0
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 2.9e-17 92.8 64 75.0
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 1.4e-16 90.5 77 62.3
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 1.9e-16 90.1 77 66.2
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 2.4e-16 89.7 70 65.7
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 3.2e-16 89.4 73 69.9
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 4.1e-16 89.0 82 57.3
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 4.1e-16 89.0 77 64.9
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 4.1e-16 89.0 83 62.7
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 5.4e-16 88.6 82 59.8
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 7.1e-16 88.2 61 77.0
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 9.2e-16 87.8 82 61.0
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 1.2e-15 87.4 82 57.3
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 1.6e-15 87.0 82 63.4
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 1.6e-15 87.0 77 64.9
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 2.1e-15 86.7 63 73.0
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 2.1e-15 86.7 83 60.2
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 2.7e-15 86.3 77 59.7
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 2.7e-15 86.3 62 69.4
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 3.5e-15 85.9 82 62.2
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 3.5e-15 85.9 73 61.6
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 3.5e-15 85.9 71 64.8
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 4.6e-15 85.5 61 72.1
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 4.6e-15 85.5 83 59.0
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 7.8e-15 84.7 67 67.2
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 7.8e-15 84.7 73 67.1
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 7.8e-15 84.7 83 59.0
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 1.0e-14 84.3 64 67.2
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 1.3e-14 84.0 58 74.1
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 3.0e-14 82.8 57 71.9
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 3.9e-14 82.4 77 62.3
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 8.6e-14 81.3 55 76.4
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 5.6e-13 78.6 64 65.6
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 9.6e-13 77.8 63 60.3
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 1.6e-12 77.0 85 55.3
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 1.6e-12 77.0 62 61.3
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 1.6e-12 77.0 62 61.3
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 3.6e-12 75.9 64 62.5
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 6.2e-12 75.1 63 58.7
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 8.1e-12 74.7 64 59.4
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 1.1e-11 74.3 63 60.3
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 1.1e-11 74.3 63 60.3
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 1.4e-11 73.9 63 58.7
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 1.8e-11 73.6 54 74.1
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 6.8e-11 71.6 65 61.5
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 6.8e-11 71.6 63 58.7
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 8.9e-11 71.2 54 70.4
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 2.0e-10 70.1 63 57.1
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 2.0e-10 70.1 65 58.5
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 5.8e-10 68.6 68 55.9
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 5.8e-10 68.6 141 36.9
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 7.6e-10 68.2 64 54.7
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 9.9e-10 67.8 59 59.3
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 9.9e-10 67.8 59 59.3
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 9.9e-10 67.8 127 36.2
Lalb_Chr03g0030401 Lupinus albus HOM05D007448 ORTHO05D009392 1.3e-09 67.4 65 58.5
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 1.7e-09 67.0 63 55.6
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 2.9e-09 66.2 55 63.6
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 3.8e-09 65.9 49 71.4
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 6.4e-09 65.1 58 55.2
AUR62029317 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.1e-08 64.3 81 50.6
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 1.1e-08 64.3 46 69.6
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 1.4e-08 63.9 46 69.6
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 1.4e-08 63.9 58 53.4
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 3.2e-08 62.8 84 45.2
CAN.G1320.10 Capsicum annuum HOM05D007448 ORTHO05D009392 2.1e-07 60.1 65 53.8
Atru.chr2.2826 Acer truncatum HOM05D007448 ORTHO05D009392 7.8e-07 58.2 83 56.6
Pp3c3_18440 Physcomitrium patens HOM05D007448 ORTHO05D009392 3.0e-06 56.2 58 53.4
MELO3C030681.2 Cucumis melo HOM05D007448 ORTHO05D009392 3.9e-06 55.8 48 56.2


User provided reference genes

Program Settings