Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 2.1e-157 558.9 273 100.0
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 4.8e-149 531.2 274 95.6
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 4.8e-133 478.0 273 84.2
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 3.7e-125 451.8 279 80.3
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 1.7e-122 443.0 272 77.2
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.0e-119 433.7 270 78.5
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 2.3e-119 432.6 270 77.4
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 3.0e-119 432.2 272 75.4
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 1.5e-118 429.9 269 77.7
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 7.4e-118 427.6 276 74.3
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.7e-117 426.4 275 76.7
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 1.7e-117 426.4 272 74.3
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 3.7e-117 425.2 273 74.7
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 4.8e-117 424.9 270 75.6
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 9.1e-116 420.6 270 75.9
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 1.0e-114 417.2 248 81.0
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 1.3e-114 416.8 269 77.0
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 1.3e-114 416.8 276 73.6
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.7e-114 416.4 273 75.1
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 3.8e-114 415.2 273 75.1
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 1.4e-113 413.3 276 73.6
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 1.9e-113 412.9 280 74.6
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 4.2e-113 411.8 270 74.1
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 4.2e-113 411.8 270 74.4
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 1.6e-112 409.8 277 71.5
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.1e-112 409.5 277 71.8
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.7e-112 409.1 279 72.4
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 3.6e-112 408.7 242 81.8
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 3.6e-112 408.7 280 70.7
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 3.6e-112 408.7 273 74.0
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 6.1e-112 407.9 277 71.5
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 7.9e-112 407.5 273 74.4
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 1.4e-111 406.8 280 72.9
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 1.4e-111 406.8 270 72.2
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 1.8e-111 406.4 278 72.3
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 3.0e-111 405.6 269 73.6
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 3.9e-111 405.2 273 73.3
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 5.1e-111 404.8 276 69.9
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 6.7e-111 404.4 275 73.5
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 8.8e-111 404.1 268 73.9
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 3.3e-110 402.1 278 73.4
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 3.3e-110 402.1 278 71.6
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 3.3e-110 402.1 275 72.0
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 5.7e-110 401.4 274 72.6
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 1.3e-109 400.2 276 69.6
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.8e-109 398.3 273 71.4
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 8.2e-109 397.5 276 71.7
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 1.1e-108 397.1 276 68.8
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.4e-108 396.7 273 71.4
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 1.4e-108 396.7 278 68.7
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 1.4e-108 396.7 278 69.1
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.8e-108 396.4 273 71.4
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 4.1e-108 395.2 236 80.5
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 4.1e-108 395.2 278 68.3
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 5.3e-108 394.8 269 68.8
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 9.1e-108 394.0 276 67.8
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 9.1e-108 394.0 275 72.0
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.5e-107 393.3 282 69.1
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 3.5e-107 392.1 286 68.9
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 5.9e-107 391.3 259 73.4
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 1.7e-106 389.8 278 71.9
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 1.7e-106 389.8 276 66.3
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 2.9e-106 389.0 273 69.6
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 3.8e-106 388.7 269 71.0
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 5.0e-106 388.3 275 71.3
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 6.5e-106 387.9 269 69.9
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 1.1e-105 387.1 278 70.9
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.4e-105 386.7 277 69.3
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 2.5e-105 386.0 238 79.8
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 4.2e-105 385.2 269 68.0
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 4.2e-105 385.2 271 69.4
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 1.2e-104 383.6 235 77.9
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 1.6e-104 383.3 272 67.6
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 3.6e-104 382.1 273 69.6
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 8.0e-104 380.9 275 68.4
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 8.0e-104 380.9 275 68.4
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 1.0e-103 380.6 278 66.9
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 1.0e-103 380.6 272 67.3
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 1.4e-103 380.2 270 71.1
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 2.3e-103 379.4 272 66.9
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.0e-103 379.0 276 68.1
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 3.9e-103 378.6 272 68.0
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 1.1e-102 377.1 274 69.7
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 1.5e-102 376.7 271 69.0
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 7.4e-102 374.4 277 65.3
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 7.4e-102 374.4 277 65.3
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 7.4e-102 374.4 274 68.6
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.3e-101 373.6 280 64.6
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 2.2e-101 372.9 281 63.7
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 6.3e-101 371.3 284 64.4
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 6.3e-101 371.3 284 64.4
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 8.2e-101 370.9 281 64.4
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 8.2e-101 370.9 275 67.6
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.4e-100 370.2 281 64.4
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 1.4e-100 370.2 277 64.6
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 1.8e-100 369.8 269 66.9
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 2.4e-100 369.4 273 67.8
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 3.1e-100 369.0 277 64.3
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 4.1e-100 368.6 282 64.5
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 4.1e-100 368.6 277 64.3
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 4.1e-100 368.6 282 64.5
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 4.1e-100 368.6 273 67.4
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 5.3e-100 368.2 277 64.3
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 5.3e-100 368.2 277 64.3
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 5.3e-100 368.2 273 66.3
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 7.0e-100 367.9 277 65.7
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 7.0e-100 367.9 277 65.0
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 7.0e-100 367.9 285 64.9
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 7.0e-100 367.9 236 73.3
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 9.1e-100 367.5 278 65.8
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 1.6e-99 366.7 281 63.3
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 2.0e-99 366.3 279 63.4
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 2.6e-99 365.9 281 64.4
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 3.5e-99 365.5 277 63.5
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 3.5e-99 365.5 277 63.5
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 4.5e-99 365.2 277 63.9
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 5.9e-99 364.8 279 63.8
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 5.9e-99 364.8 282 63.5
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 1.0e-98 364.0 278 64.7
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 1.0e-98 364.0 278 64.7
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 1.0e-98 364.0 269 64.7
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 1.0e-98 364.0 232 73.7
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 1.0e-98 364.0 275 67.3
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 1.3e-98 363.6 283 63.3
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 1.3e-98 363.6 283 63.3
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 5.0e-98 361.7 274 64.6
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 4.7e-96 355.1 301 60.8
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 4.7e-96 355.1 271 63.8
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 6.1e-96 354.8 274 63.1
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 2.3e-95 352.8 272 64.3
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 5.2e-95 351.7 293 61.4
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 1.5e-94 350.1 281 61.6
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 5.7e-94 348.2 275 61.8
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 6.3e-93 344.7 269 63.6
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 6.3e-93 344.7 246 68.7
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 1.2e-91 340.5 237 67.5
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 1.1e-89 334.0 277 60.3
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 8.0e-88 327.8 274 60.6
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 1.8e-87 326.6 269 57.2
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.2e-86 323.9 273 61.5
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 2.2e-85 319.7 273 60.8
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 3.7e-85 318.9 185 80.5
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 1.6e-83 313.5 269 60.2
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 8.9e-79 297.7 278 53.6
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 4.4e-78 295.4 266 56.4
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 1.7e-77 293.5 274 56.2
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 4.9e-77 292.0 240 63.3
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 1.2e-75 287.3 198 68.2
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 7.8e-75 284.6 266 52.6
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 1.2e-72 277.3 265 50.9
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 1.6e-67 260.4 227 55.5
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 3.3e-65 252.7 186 65.6
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.5e-62 243.8 181 65.7
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 4.4e-62 242.3 235 47.7
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 5.1e-58 228.8 155 71.0
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 6.2e-56 221.9 280 41.1
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 8.9e-55 218.0 152 70.4
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.7e-53 213.8 153 68.0
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 2.4e-47 193.4 235 47.7
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 1.2e-46 191.0 218 46.8
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 7.1e-44 181.8 173 56.6
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 5.1e-42 175.6 234 38.0
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 2.0e-38 163.7 132 63.6
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 2.6e-38 163.3 132 63.6
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 2.6e-38 163.3 132 63.6
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 6.7e-26 122.1 113 58.4
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 4.5e-22 109.4 117 44.4
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 3.5e-19 99.8 74 59.5
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.3e-17 93.2 176 35.8


User provided reference genes

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