Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 2897.5 1491 100.0
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 2646.7 1493 92.3
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 0.0e+00 2161.7 1447 78.3
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 2049.6 1477 71.5
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 0.0e+00 2020.0 1513 69.9
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 0.0e+00 1998.0 1513 69.5
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 1985.3 1509 68.7
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1955.6 1452 70.0
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 0.0e+00 1939.1 1502 67.4
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1933.3 1502 69.0
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 1923.7 1423 69.6
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 1918.3 1517 67.2
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 0.0e+00 1902.9 1497 68.3
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1902.1 1471 67.9
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1894.8 1504 66.4
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1891.3 1496 66.8
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1848.9 1512 65.5
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1842.0 1480 66.6
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 0.0e+00 1837.8 1480 66.6
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 0.0e+00 1836.2 1520 64.6
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 1826.2 1490 65.2
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1817.4 1409 68.3
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 0.0e+00 1792.7 1375 68.9
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 0.0e+00 1751.9 1509 61.6
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 0.0e+00 1697.6 1512 60.7
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 0.0e+00 1689.1 1510 60.1
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 0.0e+00 1681.4 1549 59.6
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1649.0 1542 58.7
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 0.0e+00 1627.1 1509 59.0
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 0.0e+00 1622.4 1512 57.6
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 0.0e+00 1615.1 1512 57.8
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1609.0 1529 57.9
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 0.0e+00 1603.6 1565 56.5
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1600.1 1451 59.2
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1595.9 1518 57.8
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 0.0e+00 1589.7 1451 60.4
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 0.0e+00 1583.9 1477 58.3
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 0.0e+00 1582.0 1445 59.5
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 0.0e+00 1581.2 1445 59.3
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1578.5 1405 59.6
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 0.0e+00 1570.4 1465 58.4
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 0.0e+00 1564.3 1480 58.1
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1564.3 1449 58.6
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1562.0 1548 56.3
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 0.0e+00 1559.7 1496 57.7
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 0.0e+00 1548.9 1526 56.6
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1548.1 1224 67.7
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 0.0e+00 1533.9 1473 57.0
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 0.0e+00 1484.9 1562 53.6
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 0.0e+00 1475.7 1482 53.8
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 0.0e+00 1455.3 1565 53.2
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 0.0e+00 1444.9 1350 59.6
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 0.0e+00 1439.1 1589 52.1
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 0.0e+00 1402.5 1508 54.0
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 0.0e+00 1369.4 1334 57.9
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 0.0e+00 1194.1 1298 52.5
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1147.1 967 63.9
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 0.0e+00 1115.5 1263 49.6
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1114.8 966 62.4
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 0.0e+00 1104.0 827 71.1
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1084.7 933 62.8
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 0.0e+00 1082.8 1248 48.5
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 3.3e-292 1009.2 1459 41.9
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 6.8e-290 1001.5 1485 40.7
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 1.5e-289 1000.3 1056 51.0
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 5.5e-231 805.8 547 76.1
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 1.1e-215 755.0 641 63.5
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 3.7e-211 740.0 733 55.4
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 8.5e-208 728.8 1213 38.1
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 1.1e-199 701.8 544 66.0
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 1.2e-166 592.0 733 46.0
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.1e-159 568.9 407 72.2
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 4.0e-157 560.5 968 36.3
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 9.6e-127 459.5 715 41.3
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 6.5e-75 287.3 252 61.9
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 1.8e-72 279.3 229 67.2
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 7.7e-68 263.8 312 49.7
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 4.9e-54 218.0 180 62.2
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 9.2e-53 213.8 204 59.3
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 5.6e-50 204.5 137 73.7
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 8.0e-49 200.7 261 48.7
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.6e-47 195.7 157 61.8
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-45 190.3 234 41.9
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 3.5e-44 185.3 149 67.1
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 1.3e-43 183.3 120 76.7
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 1.2e-36 160.2 220 40.0
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 2.2e-30 139.4 116 65.5
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.3e-27 130.2 200 41.5
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 8.1e-25 120.9 143 54.5
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 1.7e-22 113.2 130 53.1
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 8.7e-19 100.9 112 45.5
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 9.6e-18 97.4 112 44.6
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 9.6e-18 97.4 112 44.6
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 4.8e-17 95.1 83 61.4
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 3.4e-15 89.0 69 60.9
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 1.3e-14 87.0 51 84.3
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 3.8e-14 85.5 120 40.0
GSVIVG01038403001 Vitis vinifera HOM05D007170 ORTHO05D009243 9.6e-10 70.9 39 87.2
Lj7A482T28 Lonicera japonica HOM05D007170 ORTHO05D009243 3.7e-09 68.9 120 40.8
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 8.1e-09 67.8 299 23.4
Cre10.g453650 Chlamydomonas reinhardtii HOM05D007170 ORTHO05D009243 1.8e-08 66.6 264 23.5
Zm00001eb019760 Zea mays HOM05D007170 ORTHO05D009243 5.3e-08 65.1 85 43.5
CDE07G0977 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 7.6e-07 61.2 67 50.7


User provided reference genes

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