Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020486 Carpinus fangiana HOM05D008268 ORTHO05D010144 1.2e-186 656.4 331 100.0
Haze_09553 Corylus avellana HOM05D008268 ORTHO05D010144 6.2e-135 484.6 332 80.4
CiPaw.11G178900 Carya illinoinensis HOM05D008268 ORTHO05D010144 5.7e-96 355.1 346 65.0
QL08p017136 Quercus lobata HOM05D008268 ORTHO05D010144 5.5e-67 258.8 339 52.8
Thecc.07G068700 Theobroma cacao HOM05D008268 ORTHO05D010144 1.3e-44 184.5 325 44.0
Duzib170G0253 Durio zibethinus HOM05D008268 ORTHO05D010144 6.2e-42 175.6 347 41.5
Dinv22349 Davidia involucrata HOM05D008268 ORTHO05D010144 1.1e-38 164.9 342 44.4
MD03G1216800 Malus domestica HOM05D008268 ORTHO05D010144 1.3e-36 157.9 320 43.4
Prupe.4G192500 Prunus persica HOM05D008268 ORTHO05D010144 5.0e-36 156.0 358 42.2
Manes.15G081401 Manihot esculenta HOM05D008268 ORTHO05D010144 1.9e-35 154.1 347 43.5
Duzib213G0412 Durio zibethinus HOM05D008268 ORTHO05D010144 1.6e-34 151.0 349 41.5
Dinv08361 Davidia involucrata HOM05D008268 ORTHO05D010144 2.1e-34 150.6 334 39.8
TAR626G0659 Trochodendron aralioides HOM05D008268 ORTHO05D010144 3.6e-34 149.8 333 39.6
MD11G1234600 Malus domestica HOM05D008268 ORTHO05D010144 4.7e-34 149.4 302 42.7
Cpa.g.sc12.16 Carica papaya HOM05D008268 ORTHO05D010144 1.1e-33 148.3 344 40.7
Phvul.005G087800 Phaseolus vulgaris HOM05D008268 ORTHO05D010144 1.7e-31 141.0 337 38.9
VMungo1080G0851 Vigna mungo HOM05D008268 ORTHO05D010144 6.4e-31 139.0 333 39.9
Gohir.A01G069900 Gossypium hirsutum HOM05D008268 ORTHO05D010144 1.7e-28 131.0 349 37.0
Gohir.D01G057100 Gossypium hirsutum HOM05D008268 ORTHO05D010144 1.7e-28 131.0 349 36.7
Gorai.002G077500 Gossypium raimondii HOM05D008268 ORTHO05D010144 1.7e-28 131.0 349 36.7
Glyma.13G282800 Glycine max HOM05D008268 ORTHO05D010144 6.6e-28 129.0 363 39.4
Lalb_Chr25g0286831 Lupinus albus HOM05D008268 ORTHO05D010144 2.6e-24 117.1 356 38.5
GSVIVG01014468001 Vitis vinifera HOM05D008268 ORTHO05D010144 1.9e-22 110.9 223 42.2
Actinidia09966 Actinidia chinensis HOM05D008268 ORTHO05D010144 5.4e-22 109.4 321 33.6
Potri.001G409000 Populus trichocarpa HOM05D019858 ORTHO05D010144 2.1e-21 107.5 338 35.5
Sabra16G0271800 Salix brachista HOM05D019858 ORTHO05D010144 8.6e-20 102.1 356 34.8
Sabra16G0276800 Salix brachista HOM05D019858 ORTHO05D010144 8.6e-20 102.1 356 34.8
Atru.chr2.2941 Acer truncatum HOM05D008268 ORTHO05D010144 1.5e-19 101.3 371 34.2
MBI02_g38752_MAGBIO Magnolia biondii HOM05D008268 ORTHO05D010144 3.3e-19 100.1 304 35.5
Glyma.12G217800 Glycine max HOM05D008268 ORTHO05D010144 1.6e-18 97.8 261 39.1
MBI02_g46151_MAGBIO Magnolia biondii HOM05D008268 ORTHO05D010144 1.6e-18 97.8 304 35.2
Potri.011G125600 Populus trichocarpa HOM05D019858 ORTHO05D010144 3.6e-18 96.7 331 34.4
Nn1g06831 Nelumbo nucifera HOM05D008268 ORTHO05D010144 2.4e-17 94.0 342 34.2
THA.LOC104799901 Tarenaya hassleriana HOM05D010655 ORTHO05D012747 1.2e-16 91.7 347 34.0
MELO3C018179.2 Cucumis melo HOM05D008268 ORTHO05D010144 2.0e-16 90.9 302 33.8
Sabra11G0111900 Salix brachista HOM05D019858 ORTHO05D010144 5.8e-16 89.4 326 34.0
CSS0041304 Camellia sinensis var. sinensis HOM05D008268 ORTHO05D010144 9.9e-16 88.6 350 33.1
ClCG11G018600 Citrullus lanatus HOM05D008268 ORTHO05D010144 9.9e-16 88.6 321 33.0
TWI38G2068 Tripterygium wilfordii HOM05D008268 ORTHO05D010144 9.9e-16 88.6 357 34.2
CSS0042196 Camellia sinensis var. sinensis HOM05D008268 ORTHO05D010144 2.2e-15 87.4 350 32.9
Nn1g03824 Nelumbo nucifera HOM05D008268 ORTHO05D010144 4.9e-15 86.3 291 33.0
THA.LOC104809278 Tarenaya hassleriana HOM05D010655 ORTHO05D012747 6.4e-15 85.9 338 34.0
Lsat_1_v5_gn_0_5400 Lactuca sativa HOM05D008268 ORTHO05D010144 7.1e-14 82.4 298 31.2
Rhsim06G0192000 Rhododendron simsii HOM05D008268 ORTHO05D010144 7.1e-14 82.4 347 31.7
Oeu061273.1 Olea europaea HOM05D008268 ORTHO05D010144 2.1e-13 80.9 323 31.0
CsaV3_3G044260 Cucumis sativus L. HOM05D008268 ORTHO05D010144 1.7e-12 77.8 283 32.5
arahy.Tifrunner.gnm1.ann1.Y898LB Arachis hypogaea HOM05D008268 ORTHO05D010144 3.0e-12 77.0 320 31.9
PGR083G1493 Punica granatum HOM05D008268 ORTHO05D010144 6.6e-12 75.9 270 30.4
RcHm_v2.0_Chr6g0255571 Rosa chinensis HOM05D014484 ORTHO05D017021 6.6e-12 75.9 355 33.5
arahy.Tifrunner.gnm1.ann1.R70FHG Arachis hypogaea HOM05D008268 ORTHO05D010144 8.7e-12 75.5 318 32.1
FAN27G0943 Fragaria x ananassa HOM05D014484 ORTHO05D017021 8.7e-12 75.5 380 31.1
Eucgr.F01065 Eucalyptus grandis HOM05D008268 ORTHO05D010144 5.6e-11 72.8 196 37.2
FAN15G0243 Fragaria x ananassa HOM05D014484 ORTHO05D017021 5.6e-11 72.8 350 32.0
RhsimUnG0172800 Rhododendron simsii HOM05D047612 ORTHO05D010144 7.3e-11 72.4 349 33.0
Carub.0007s1355 Capsella rubella HOM05D010655 ORTHO05D012747 2.1e-10 70.9 342 32.2
FvH4_2g05340 Fragaria vesca HOM05D014484 ORTHO05D017021 2.1e-10 70.9 347 29.4
FAN24G1810 Fragaria x ananassa HOM05D014484 ORTHO05D017021 2.1e-10 70.9 347 29.4
CANSAT11G1352 Cannabis sativa HOM05D008268 ORTHO05D010144 2.8e-10 70.5 390 31.0
CARHR234980 Cardamine hirsuta HOM05D010655 ORTHO05D012747 4.8e-10 69.7 338 30.5
SHI51816 Sapria himalayana HOM05D008268 ORTHO05D010144 3.1e-09 67.0 214 32.7
Sp7g25250 Schrenkiella parvula HOM05D010655 ORTHO05D012747 3.1e-09 67.0 340 30.3
BcaNung03040 Brassica carinata HOM05D010655 ORTHO05D012747 1.2e-08 65.1 329 31.0
Nitab4.5_0000297g0210 Nicotiana tabacum HOM05D015394 ORTHO05D017774 1.5e-08 64.7 358 28.5
COL.COLO4_09500 Corchorus olitorius HOM05D008268 ORTHO05D010144 2.0e-08 64.3 250 31.6
Migut.M01849 Erythranthe guttata HOM05D008268 ORTHO05D010144 2.0e-08 64.3 291 28.9
Medtr2g081240 Medicago truncatula HOM05D008268 ORTHO05D010144 2.0e-08 64.3 334 32.0
Aa31LG5G10170 Aethionema arabicum HOM05D010655 ORTHO05D012747 5.8e-08 62.8 347 29.1
AL7G25480 Arabidopsis lyrata HOM05D010655 ORTHO05D012747 5.8e-08 62.8 346 29.8
Nitab4.5_0001252g0050 Nicotiana tabacum HOM05D015394 ORTHO05D017774 7.6e-08 62.4 374 28.1
Peaxi162Scf00000g07812 Petunia axillaris HOM05D015394 ORTHO05D017774 7.6e-08 62.4 329 27.7
Psat5g247560 Pisum sativum HOM05D008268 ORTHO05D010144 2.2e-07 60.8 317 32.2
CDE02G2061 Ceratophyllum demersum HOM05D057939 ORTHO05D010144 2.9e-07 60.5 264 32.2
Ca_01792_v3 Cicer arietinum L. HOM05D008268 ORTHO05D010144 3.8e-07 60.1 88 48.9
Sed0023643 Sechium edule HOM05D008268 ORTHO05D010144 3.8e-07 60.1 341 29.0
BraA01t01800Z Brassica rapa HOM05D010655 ORTHO05D012747 4.9e-07 59.7 325 32.3
A01p18510 Brassica napus HOM05D010655 ORTHO05D012747 6.4e-07 59.3 325 32.3
BolC1t02292H Brassica oleracea HOM05D010655 ORTHO05D012747 3.2e-06 57.0 334 30.2
Sabra15G0071800 Salix brachista HOM05D019858 ORTHO05D010144 4.2e-06 56.6 204 33.3
RhsimUnG0257100 Rhododendron simsii HOM05D047612 ORTHO05D010144 7.1e-06 55.8 366 30.9
Solyc07g063670.2 Solanum lycopersicum HOM05D015394 ORTHO05D017774 7.1e-06 55.8 346 27.5


User provided reference genes

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