Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 1.0e-188 663.3 342 100.0
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 5.0e-180 634.4 342 95.6
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 2.1e-141 506.1 347 78.7
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 3.5e-141 505.4 344 78.8
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 1.7e-140 503.1 344 78.5
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 2.5e-123 446.0 348 68.7
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 2.1e-122 443.0 349 69.1
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 3.6e-122 442.2 346 68.5
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 5.3e-121 438.3 348 68.7
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 1.5e-120 436.8 343 68.2
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 2.4e-118 429.5 342 67.3
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 5.4e-118 428.3 347 69.7
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 1.2e-117 427.2 348 66.1
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 4.6e-117 425.2 348 67.2
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 7.9e-117 424.5 348 67.5
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 2.5e-115 419.5 348 67.2
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 3.3e-115 419.1 346 65.3
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 4.3e-115 418.7 346 64.2
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 9.6e-115 417.5 351 65.5
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 2.4e-113 412.9 347 66.9
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 1.5e-112 410.2 347 64.8
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 2.6e-112 409.5 344 64.2
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 4.5e-112 408.7 344 64.2
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 7.6e-112 407.9 348 64.4
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 4.9e-111 405.2 344 63.7
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 2.4e-110 402.9 350 64.0
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 3.2e-110 402.5 345 62.0
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 3.2e-110 402.5 356 63.8
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 5.5e-110 401.7 342 64.6
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 9.3e-110 401.0 331 65.9
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 2.7e-109 399.4 343 64.1
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 7.9e-109 397.9 346 64.5
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 1.8e-108 396.7 347 63.1
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 1.8e-108 396.7 354 62.1
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 2.3e-108 396.4 340 63.5
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 8.7e-108 394.4 347 62.8
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 4.3e-107 392.1 345 61.4
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 4.3e-107 392.1 348 61.5
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 9.6e-107 391.0 342 62.3
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 4.8e-106 388.7 346 60.7
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 4.8e-106 388.7 346 60.7
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 6.2e-106 388.3 345 61.2
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 1.8e-105 386.7 334 62.6
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 2.4e-105 386.3 346 60.1
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 4.0e-105 385.6 354 60.5
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 9.0e-105 384.4 344 61.6
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 2.6e-104 382.9 342 61.4
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 4.5e-104 382.1 346 61.3
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 4.5e-104 382.1 345 61.4
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 2.9e-103 379.4 347 60.5
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 3.8e-103 379.0 291 67.7
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 4.9e-103 378.6 349 60.7
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 4.9e-103 378.6 343 60.9
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 6.5e-103 378.3 352 59.9
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 1.9e-102 376.7 354 60.7
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 3.2e-102 375.9 353 60.1
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 1.6e-101 373.6 348 57.5
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 2.1e-101 373.2 351 59.3
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 2.7e-101 372.9 269 73.6
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 3.5e-101 372.5 339 61.4
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 1.3e-100 370.5 346 60.7
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 8.7e-100 367.9 345 58.3
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 1.1e-99 367.5 346 60.4
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 1.3e-98 364.0 284 66.5
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 1.6e-98 363.6 348 60.3
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 2.8e-98 362.8 274 70.8
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 3.7e-98 362.5 344 59.0
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 5.0e-95 352.1 347 57.1
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 2.1e-93 346.7 348 57.8
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 3.6e-93 345.9 349 55.9
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 7.9e-93 344.7 350 56.6
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 1.8e-92 343.6 327 60.2
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 6.7e-92 341.7 344 56.7
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 1.5e-91 340.5 343 56.9
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 1.9e-91 340.1 275 63.6
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 5.7e-91 338.6 350 56.3
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 7.4e-91 338.2 350 56.0
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 6.9e-89 331.6 346 56.6
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 1.5e-88 330.5 344 55.2
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 1.5e-88 330.5 344 55.2
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 3.4e-88 329.3 348 56.3
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 3.4e-88 329.3 296 60.5
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 4.5e-88 328.9 346 55.5
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 2.2e-87 326.6 282 58.5
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 3.8e-87 325.9 347 55.0
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 4.7e-85 318.9 350 53.7
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 1.1e-75 287.7 295 57.6
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 4.8e-74 282.3 338 48.5
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 7.2e-70 268.5 204 65.7
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 7.0e-65 251.9 301 46.2
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 4.5e-64 249.2 330 46.7
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 5.7e-59 232.3 185 62.2
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 1.2e-56 224.6 233 54.9
FAN21G2436 Fragaria x ananassa HOM05D007317 ORTHO05D009299 4.0e-52 209.5 132 75.8
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 7.0e-49 198.7 267 39.7
PGSC0003DMG400016049 Solanum tuberosum HOM05D007317 ORTHO05D009299 1.0e-44 184.9 121 72.7
Mapoly0015s0049 Marchantia polymorpha HOM05D007317 ORTHO05D009299 3.4e-35 153.3 262 38.2
Pp3c9_12310 Physcomitrium patens HOM05D007317 ORTHO05D009299 6.4e-34 149.1 272 34.9
Dinv32111 Davidia involucrata HOM05D007317 ORTHO05D009299 7.0e-33 145.6 114 67.5
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 1.6e-32 144.4 241 44.0
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 1.6e-29 134.4 180 49.4
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 6.8e-28 129.0 131 51.1
MD03G1212500 Malus domestica HOM05D007317 ORTHO05D009299 1.7e-23 114.4 114 56.1
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 1.1e-20 105.1 267 30.3
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 6.2e-13 79.3 103 39.8
Cre08.g369000 Chlamydomonas reinhardtii HOM05D007317 ORTHO05D009299 8.4e-10 68.9 292 25.0


User provided reference genes

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