Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020420 Carpinus fangiana HOM05D007233 ORTHO05D009043 4.3e-56 221.1 111 100.0
Cfa010203 Carpinus fangiana HOM05D007233 ORTHO05D009043 1.1e-40 169.9 105 78.1
Haze_23494 Corylus avellana HOM05D007233 ORTHO05D009043 2.5e-40 168.7 95 84.2
Haze_23479 Corylus avellana HOM05D007233 ORTHO05D009043 4.0e-38 161.4 95 82.1
CiPaw.14G104900 Carya illinoinensis HOM05D007233 ORTHO05D009043 8.4e-36 153.7 95 75.8
Haze_23491 Corylus avellana HOM05D007233 ORTHO05D009043 3.2e-35 151.8 101 76.2
QL01p014111 Quercus lobata HOM05D007233 ORTHO05D009043 1.8e-30 136.0 95 71.6
Haze_23472 Corylus avellana HOM05D007233 ORTHO05D009043 4.0e-30 134.8 94 72.3
Lalb_Chr03g0027851 Lupinus albus HOM05D007233 ORTHO05D009043 2.4e-27 125.6 95 66.3
Manes.04G010800 Manihot esculenta HOM05D007233 ORTHO05D009043 3.2e-27 125.2 95 65.3
Potri.004G190200 Populus trichocarpa HOM05D007233 ORTHO05D009043 4.2e-27 124.8 95 66.3
Sabra04G0127900 Salix brachista HOM05D007233 ORTHO05D009043 4.2e-27 124.8 95 67.4
Gohir.D13G228300 Gossypium hirsutum HOM05D007233 ORTHO05D009043 1.6e-26 122.9 95 69.5
Medtr4g056300 Medicago truncatula HOM05D007233 ORTHO05D009043 3.5e-26 121.7 96 67.7
Gohir.A13G223500 Gossypium hirsutum HOM05D007233 ORTHO05D009043 4.6e-26 121.3 99 66.7
Thecc.09G294400 Theobroma cacao HOM05D007233 ORTHO05D009043 4.6e-26 121.3 95 66.3
PGR119G2223 Punica granatum HOM05D007233 ORTHO05D009043 7.9e-26 120.6 95 64.2
Lj3g0012043 Lotus japonicus HOM05D007233 ORTHO05D009043 1.0e-25 120.2 95 63.2
Ca_10766_v3 Cicer arietinum L. HOM05D007233 ORTHO05D009043 1.3e-25 119.8 95 64.2
GSVIVG01031420001 Vitis vinifera HOM05D007233 ORTHO05D009043 1.8e-25 119.4 95 62.1
TPR.G32017 Trifolium pratense HOM05D007233 ORTHO05D009043 3.0e-25 118.6 96 64.6
VMungo1127G1048 Vigna mungo HOM05D007233 ORTHO05D009043 3.0e-25 118.6 95 62.1
Eucgr.F03331 Eucalyptus grandis HOM05D007233 ORTHO05D009043 3.9e-25 118.2 93 63.4
Cc01_g10010 Coffea canephora HOM05D007233 ORTHO05D009043 6.7e-25 117.5 100 60.0
Sed0016181 Sechium edule HOM05D007233 ORTHO05D009043 8.7e-25 117.1 95 64.2
ClCG01G013980 Citrullus lanatus HOM05D007233 ORTHO05D009043 1.1e-24 116.7 95 64.2
COL.COLO4_31139 Corchorus olitorius HOM05D007233 ORTHO05D009043 1.1e-24 116.7 95 63.2
Glyma.11G190700 Glycine max HOM05D007233 ORTHO05D009043 1.5e-24 116.3 95 63.2
Atru.chr3.3421 Acer truncatum HOM05D007233 ORTHO05D009043 1.9e-24 115.9 95 61.1
Phvul.011G088600 Phaseolus vulgaris HOM05D007233 ORTHO05D009043 3.3e-24 115.2 95 60.0
CSS0019792 Camellia sinensis var. sinensis HOM05D007233 ORTHO05D009043 4.3e-24 114.8 95 58.9
TAR369G0714 Trochodendron aralioides HOM05D007233 ORTHO05D009043 5.6e-24 114.4 95 61.1
MSTRG.17742 Avicennia marina HOM05D007233 ORTHO05D009043 7.4e-24 114.0 97 61.9
CANSAT78G0435 Cannabis sativa HOM05D007233 ORTHO05D009043 7.4e-24 114.0 94 61.7
EL10Ac9g21047 Beta vulgaris HOM05D007233 ORTHO05D009043 9.6e-24 113.6 94 62.8
Carub.0001s0774 Capsella rubella HOM05D007233 ORTHO05D009043 1.3e-23 113.2 95 58.9
SalBow3G1176 Salvia bowleyana HOM05D007233 ORTHO05D009043 1.3e-23 113.2 96 59.4
Migut.N02527 Erythranthe guttata HOM05D007233 ORTHO05D009043 4.8e-23 111.3 96 59.4
SGA_v2.0_scaffold93G28323 Striga asiatica HOM05D007233 ORTHO05D009043 8.2e-23 110.5 98 54.1
Aa31LG1G6480 Aethionema arabicum HOM05D007233 ORTHO05D009043 1.4e-22 109.8 95 57.9
Aqoxy1G01014 Aquilegia oxysepala HOM05D007233 ORTHO05D009043 1.4e-22 109.8 95 54.7
AL1G18800 Arabidopsis lyrata HOM05D007233 ORTHO05D009043 1.8e-22 109.4 95 56.8
SHI05395 Sapria himalayana HOM05D007233 ORTHO05D009043 1.8e-22 109.4 95 62.1
THA.LOC104826400 Tarenaya hassleriana HOM05D007233 ORTHO05D009043 1.8e-22 109.4 95 57.9
MELO3C004843.2 Cucumis melo HOM05D007233 ORTHO05D009043 2.4e-22 109.0 95 61.1
FvH4_3g30010 Fragaria vesca HOM05D007233 ORTHO05D009043 2.4e-22 109.0 93 57.0
vmacro03232 Vaccinium macrocarpon HOM05D007233 ORTHO05D009043 2.4e-22 109.0 95 57.9
Ciclev10030019m.g Citrus clementina HOM05D007233 ORTHO05D009043 4.0e-22 108.2 96 60.4
FAN25G1956 Fragaria x ananassa HOM05D007233 ORTHO05D009043 6.9e-22 107.5 93 55.9
Prupe.6G116400 Prunus persica HOM05D007233 ORTHO05D009043 9.0e-22 107.1 95 56.8
AT1G08390 Arabidopsis thaliana HOM05D007233 ORTHO05D009043 1.2e-21 106.7 95 56.8
CsaV3_1G014310 Cucumis sativus L. HOM05D007233 ORTHO05D009043 1.5e-21 106.3 95 61.1
Peaxi162Scf00150g00710 Petunia axillaris HOM05D007233 ORTHO05D009043 1.5e-21 106.3 95 56.8
Rhsim13G0103700 Rhododendron simsii HOM05D007233 ORTHO05D009043 1.5e-21 106.3 95 56.8
CARHR008260 Cardamine hirsuta HOM05D007233 ORTHO05D009043 2.0e-21 105.9 95 55.8
A06p05410 Brassica napus HOM05D007233 ORTHO05D009043 2.6e-21 105.5 95 57.9
BraA06t23750Z Brassica rapa HOM05D007233 ORTHO05D009043 2.6e-21 105.5 95 57.9
BcaB07g34087 Brassica carinata HOM05D007233 ORTHO05D009043 3.4e-21 105.1 95 56.8
C05p06530 Brassica napus HOM05D007233 ORTHO05D009043 3.4e-21 105.1 95 56.8
BolC5t29413H Brassica oleracea HOM05D007233 ORTHO05D009043 3.4e-21 105.1 95 56.8
Lsat_1_v5_gn_1_61521 Lactuca sativa HOM05D007233 ORTHO05D009043 3.4e-21 105.1 95 56.8
RcHm_v2.0_Chr5g0055931 Rosa chinensis HOM05D007233 ORTHO05D009043 3.4e-21 105.1 93 54.8
Ah.01g016160 Amaranthus hybridus HOM05D007233 ORTHO05D009043 4.5e-21 104.8 100 52.0
MBI04_g22192_MAGBIO Magnolia biondii HOM05D007233 ORTHO05D009043 4.5e-21 104.8 95 56.8
unitig_699.g19183 Utricularia gibba HOM05D007233 ORTHO05D009043 4.5e-21 104.8 95 52.6
HanXRQChr11g0345871 Helianthus annuus HOM05D007233 ORTHO05D009043 5.8e-21 104.4 95 55.8
Sp1g07040 Schrenkiella parvula HOM05D007233 ORTHO05D009043 5.8e-21 104.4 97 55.7
AUR62031769 Chenopodium quinoa HOM05D007233 ORTHO05D009043 7.6e-21 104.0 99 53.5
FAN21G0394 Fragaria x ananassa HOM05D007233 ORTHO05D009043 7.6e-21 104.0 93 54.8
ATR0665G357 Amborella trichopoda HOM05D007233 ORTHO05D009043 1.0e-20 103.6 93 57.0
Dinv29405 Davidia involucrata HOM05D007233 ORTHO05D009043 2.2e-20 102.4 95 56.8
Hund07722 Selenicereus undatus HOM05D007233 ORTHO05D009043 2.2e-20 102.4 93 52.7
MD11G1153700 Malus domestica HOM05D007233 ORTHO05D009043 4.9e-20 101.3 93 57.0
arahy.Tifrunner.gnm1.ann1.5NF9YD Arachis hypogaea HOM05D007233 ORTHO05D009043 6.5e-20 100.9 115 48.7
Thhalv10009077m.g Eutrema salsugineum HOM05D007233 ORTHO05D009043 1.1e-19 100.1 78 59.0
Duzib170G0414 Durio zibethinus HOM05D007233 ORTHO05D009043 1.4e-19 99.8 95 60.0
DCAR_015489 Daucus carota HOM05D007233 ORTHO05D009043 2.5e-19 99.0 95 49.5
PGSC0003DMG400000464 Solanum tuberosum HOM05D007233 ORTHO05D009043 2.5e-19 99.0 95 50.5
Solyc11g066690.2 Solanum lycopersicum HOM05D007233 ORTHO05D009043 3.2e-19 98.6 95 51.6
Sopen11g026420 Solanum pennellii HOM05D007233 ORTHO05D009043 3.2e-19 98.6 95 51.6
Nitab4.5_0000442g0180 Nicotiana tabacum HOM05D007233 ORTHO05D009043 5.5e-19 97.8 93 53.8
PSO063G0378 Papaver somniferum HOM05D007233 ORTHO05D009043 5.5e-19 97.8 94 57.4
CAN.G644.46 Capsicum annuum HOM05D007233 ORTHO05D009043 2.7e-18 95.5 95 52.6
Nn6g35132 Nelumbo nucifera HOM05D007233 ORTHO05D009043 3.5e-18 95.1 80 57.5
PSO339G4613 Papaver somniferum HOM05D007233 ORTHO05D009043 3.5e-18 95.1 94 55.3
ECA248G0451 Erigeron canadensis HOM05D007233 ORTHO05D009043 6.0e-18 94.4 95 48.4
Zm00001eb053200 Zea mays HOM05D007233 ORTHO05D009043 3.0e-17 92.0 98 50.0
Haze_23488 Corylus avellana HOM05D007233 ORTHO05D009043 5.1e-17 91.3 84 59.5
Os03g0684300 Oryza sativa ssp. japonica HOM05D007233 ORTHO05D009043 7.4e-16 87.4 97 46.4
Mapoly0016s0182 Marchantia polymorpha HOM05D007233 ORTHO05D009043 1.0e-12 77.0 94 44.7
Pp3c26_4940 Physcomitrium patens HOM05D007233 ORTHO05D009043 1.7e-12 76.3 94 43.6
Pp3c26_4950 Physcomitrium patens HOM05D007233 ORTHO05D009043 1.7e-12 76.3 94 43.6
Gorai.013G259000 Gossypium raimondii HOM05D007233 ORTHO05D009043 2.1e-10 69.3 81 55.6
ClCG08G000500 Citrullus lanatus HOM05D007233 ORTHO05D009043 3.9e-09 65.1 65 58.5
Cpa.g.sc47.40 Carica papaya HOM05D007233 ORTHO05D009043 5.1e-09 64.7 65 55.4
Oeu000616.2 Olea europaea HOM05D007233 ORTHO05D009043 1.7e-07 59.7 70 47.1
Psat0s3169g0040 Pisum sativum HOM05D007233 ORTHO05D009043 3.7e-07 58.5 67 56.7


User provided reference genes

Program Settings