Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 7.1e-98 360.5 174 100.0
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 6.3e-54 214.5 103 98.1
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 6.3e-54 214.5 103 96.1
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 6.3e-54 214.5 103 96.1
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 6.3e-54 214.5 103 96.1
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 6.3e-54 214.5 103 96.1
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 8.2e-54 214.2 103 98.1
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.1e-53 213.8 103 97.1
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.1e-53 213.8 103 97.1
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 1.1e-53 213.8 102 98.0
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.4e-53 213.4 103 95.1
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 1.4e-53 213.4 103 97.1
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.8e-53 213.0 103 95.1
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 1.8e-53 213.0 103 95.1
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 1.8e-53 213.0 103 95.1
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 1.8e-53 213.0 103 98.1
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 1.8e-53 213.0 103 98.1
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 1.8e-53 213.0 103 95.1
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 1.8e-53 213.0 103 98.1
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.4e-53 212.6 103 96.1
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 2.4e-53 212.6 103 97.1
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 3.1e-53 212.2 103 96.1
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 4.1e-53 211.8 103 96.1
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 5.3e-53 211.5 103 96.1
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 5.3e-53 211.5 103 96.1
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 6.9e-53 211.1 103 96.1
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 6.9e-53 211.1 103 96.1
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 6.9e-53 211.1 103 96.1
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 1.2e-52 210.3 103 93.2
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 1.5e-52 209.9 103 95.1
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 1.5e-52 209.9 103 94.2
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 1.5e-52 209.9 103 94.2
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 1.5e-52 209.9 103 96.1
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 2.0e-52 209.5 103 95.1
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 2.6e-52 209.1 103 95.1
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 4.5e-52 208.4 103 94.2
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 5.9e-52 208.0 103 93.2
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 5.9e-52 208.0 103 94.2
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 5.9e-52 208.0 103 92.2
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 5.9e-52 208.0 103 95.1
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 5.9e-52 208.0 103 93.2
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 1.3e-51 206.8 103 94.2
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.3e-51 206.8 103 95.1
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 1.3e-51 206.8 103 93.2
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 1.3e-51 206.8 103 94.2
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 1.3e-51 206.8 103 94.2
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 1.3e-51 206.8 103 94.2
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 1.7e-51 206.5 103 94.2
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 1.7e-51 206.5 103 95.1
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 1.7e-51 206.5 103 92.2
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 1.7e-51 206.5 103 94.2
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.7e-51 206.5 103 94.2
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 1.7e-51 206.5 103 94.2
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 2.2e-51 206.1 103 92.2
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 2.2e-51 206.1 103 94.2
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 2.9e-51 205.7 102 95.1
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 5.0e-51 204.9 103 92.2
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 5.0e-51 204.9 103 93.2
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 5.0e-51 204.9 103 93.2
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 5.0e-51 204.9 103 93.2
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 5.0e-51 204.9 103 92.2
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 5.0e-51 204.9 103 92.2
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 6.5e-51 204.5 103 92.2
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 6.5e-51 204.5 103 93.2
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 6.5e-51 204.5 103 92.2
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 6.5e-51 204.5 103 92.2
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 8.5e-51 204.1 103 93.2
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 8.5e-51 204.1 103 93.2
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 8.5e-51 204.1 103 92.2
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 1.1e-50 203.8 103 93.2
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 1.1e-50 203.8 103 92.2
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 1.1e-50 203.8 103 92.2
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 1.1e-50 203.8 103 92.2
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 1.1e-50 203.8 103 92.2
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.4e-50 203.4 103 93.2
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 1.4e-50 203.4 103 91.3
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 1.9e-50 203.0 103 92.2
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 1.9e-50 203.0 102 93.1
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.9e-50 203.0 98 95.9
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.9e-50 203.0 103 91.3
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.9e-50 203.0 103 91.3
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 1.9e-50 203.0 102 92.2
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 1.9e-50 203.0 103 93.2
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.5e-50 202.6 103 90.3
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 2.5e-50 202.6 103 91.3
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 3.2e-50 202.2 103 92.2
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 3.2e-50 202.2 103 92.2
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 3.2e-50 202.2 103 91.3
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 4.2e-50 201.8 103 91.3
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 4.2e-50 201.8 103 90.3
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 5.5e-50 201.4 103 89.3
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 7.2e-50 201.1 103 89.3
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 7.2e-50 201.1 103 91.3
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 7.2e-50 201.1 120 80.8
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 7.2e-50 201.1 103 90.3
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 9.4e-50 200.7 102 91.2
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.2e-49 200.3 114 81.6
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 1.2e-49 200.3 103 92.2
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.6e-49 199.9 103 89.3
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 1.6e-49 199.9 103 90.3
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 2.1e-49 199.5 103 88.3
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 2.1e-49 199.5 103 89.3
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 2.7e-49 199.1 103 89.3
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 2.7e-49 199.1 103 90.3
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 3.6e-49 198.7 103 88.3
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 4.7e-49 198.4 102 92.2
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 4.7e-49 198.4 103 89.3
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 4.7e-49 198.4 103 89.3
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 6.1e-49 198.0 103 88.3
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 8.0e-49 197.6 103 88.3
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.0e-48 197.2 103 90.3
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 1.0e-48 197.2 103 88.3
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.4e-48 196.8 103 88.3
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.4e-48 196.8 103 88.3
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 1.8e-48 196.4 103 87.4
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 2.3e-48 196.1 103 90.3
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 2.3e-48 196.1 102 91.2
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 2.3e-48 196.1 102 86.3
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 3.9e-48 195.3 103 89.3
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 6.7e-48 194.5 102 88.2
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 6.7e-48 194.5 103 86.4
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 8.8e-48 194.1 103 88.3
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 1.1e-47 193.7 103 87.4
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 2.6e-47 192.6 103 84.5
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 2.6e-47 192.6 99 89.9
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 3.3e-47 192.2 107 84.1
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 1.7e-46 189.9 97 89.7
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 2.4e-45 186.0 103 86.4
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 2.6e-44 182.6 103 80.6
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 4.5e-44 181.8 98 84.7
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 7.7e-44 181.0 99 85.9
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 2.2e-43 179.5 103 78.6
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 1.6e-41 173.3 89 86.5
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.4e-40 170.2 103 71.8
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.4e-40 170.2 103 71.8
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.4e-40 170.2 103 71.8
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 1.4e-40 170.2 103 75.7
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.3e-40 169.5 85 89.4
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 4.0e-40 168.7 83 92.8
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 5.2e-40 168.3 103 70.9
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 8.8e-40 167.5 100 76.0
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 3.7e-38 162.2 103 71.8
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 2.7e-36 156.0 103 75.7
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 3.5e-36 155.6 98 78.6
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 1.9e-34 149.8 78 88.5
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 4.2e-34 148.7 76 89.5
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 4.7e-33 145.2 70 95.7
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 9.8e-31 137.5 103 62.1
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 3.7e-30 135.6 103 68.0
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 9.1e-29 131.0 65 92.3
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 1.7e-27 126.7 98 57.1
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 5.0e-27 125.2 64 85.9
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 1.2e-17 94.0 86 48.8
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 5.8e-15 85.1 46 91.3
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 9.8e-15 84.3 40 92.5
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 1.7e-14 83.6 41 95.1
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.2e-14 83.2 49 67.3
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 2.0e-12 76.6 41 85.4
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 4.6e-12 75.5 68 55.9
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 1.7e-11 73.6 39 82.1
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.5e-10 70.5 35 88.6


User provided reference genes

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