Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 2.8e-21 104.4 53 100.0
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 9.0e-20 99.4 52 94.2
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 9.0e-20 99.4 52 94.2
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 9.0e-20 99.4 52 94.2
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 9.0e-20 99.4 52 94.2
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 9.0e-20 99.4 52 94.2
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 9.0e-20 99.4 52 94.2
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 9.0e-20 99.4 52 94.2
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 9.0e-20 99.4 52 94.2
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 1.2e-19 99.0 52 92.3
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 1.2e-19 99.0 52 92.3
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 1.2e-19 99.0 52 92.3
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 1.2e-19 99.0 52 92.3
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.2e-19 99.0 52 94.2
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.2e-19 99.0 52 94.2
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 1.2e-19 99.0 52 92.3
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 1.2e-19 99.0 52 92.3
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 1.2e-19 99.0 52 92.3
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 1.2e-19 99.0 52 92.3
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.2e-19 99.0 52 94.2
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.2e-19 99.0 52 94.2
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.2e-19 99.0 52 92.3
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.2e-19 99.0 52 92.3
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.2e-19 99.0 52 92.3
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 1.2e-19 99.0 52 94.2
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 1.5e-19 98.6 52 92.3
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 1.5e-19 98.6 52 92.3
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 1.5e-19 98.6 52 92.3
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 1.5e-19 98.6 52 92.3
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 1.5e-19 98.6 52 92.3
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 2.0e-19 98.2 52 92.3
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.0e-19 98.2 52 92.3
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 2.0e-19 98.2 52 90.4
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 2.0e-19 98.2 52 90.4
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 2.6e-19 97.8 52 90.4
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 2.6e-19 97.8 52 92.3
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 2.6e-19 97.8 52 92.3
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 2.6e-19 97.8 52 92.3
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 2.6e-19 97.8 52 92.3
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 2.6e-19 97.8 52 92.3
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 3.4e-19 97.4 52 92.3
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 3.4e-19 97.4 52 90.4
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 3.4e-19 97.4 52 92.3
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 3.4e-19 97.4 52 90.4
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 3.4e-19 97.4 52 92.3
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 4.5e-19 97.1 52 90.4
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 4.5e-19 97.1 52 90.4
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 4.5e-19 97.1 52 92.3
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 4.5e-19 97.1 52 92.3
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 4.5e-19 97.1 52 92.3
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 4.5e-19 97.1 52 92.3
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 4.5e-19 97.1 52 88.5
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 5.8e-19 96.7 52 90.4
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 5.8e-19 96.7 52 88.5
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 5.8e-19 96.7 52 88.5
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 5.8e-19 96.7 52 88.5
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 5.8e-19 96.7 52 88.5
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 5.8e-19 96.7 52 88.5
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 5.8e-19 96.7 52 88.5
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 5.8e-19 96.7 52 92.3
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 5.8e-19 96.7 52 92.3
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 5.8e-19 96.7 52 90.4
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 5.8e-19 96.7 52 90.4
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 7.6e-19 96.3 52 90.4
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 7.6e-19 96.3 52 90.4
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 7.6e-19 96.3 52 92.3
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 7.6e-19 96.3 52 92.3
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 7.6e-19 96.3 52 92.3
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 7.6e-19 96.3 52 88.5
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 9.9e-19 95.9 52 90.4
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 9.9e-19 95.9 52 90.4
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 9.9e-19 95.9 49 98.0
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 9.9e-19 95.9 52 90.4
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 9.9e-19 95.9 52 90.4
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 9.9e-19 95.9 52 92.3
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.3e-18 95.5 52 92.3
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 1.3e-18 95.5 52 90.4
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 1.3e-18 95.5 52 90.4
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 1.3e-18 95.5 52 90.4
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 1.3e-18 95.5 52 92.3
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 1.3e-18 95.5 52 88.5
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 1.3e-18 95.5 52 90.4
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 1.3e-18 95.5 52 90.4
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 1.3e-18 95.5 52 90.4
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 1.7e-18 95.1 52 90.4
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.7e-18 95.1 53 90.6
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 1.7e-18 95.1 52 90.4
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 1.7e-18 95.1 52 90.4
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 1.7e-18 95.1 52 90.4
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.7e-18 95.1 52 90.4
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.7e-18 95.1 52 90.4
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 2.2e-18 94.7 52 88.5
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 2.9e-18 94.4 52 88.5
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 3.8e-18 94.0 52 88.5
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 3.8e-18 94.0 52 88.5
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 4.9e-18 93.6 52 88.5
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 4.9e-18 93.6 52 88.5
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 4.9e-18 93.6 52 86.5
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 4.9e-18 93.6 52 88.5
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 4.9e-18 93.6 52 88.5
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 4.9e-18 93.6 52 88.5
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 6.4e-18 93.2 52 88.5
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 8.4e-18 92.8 52 88.5
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 8.4e-18 92.8 52 88.5
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 8.4e-18 92.8 52 84.6
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 1.4e-17 92.0 52 82.7
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 1.4e-17 92.0 49 91.8
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 1.4e-17 92.0 52 86.5
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 1.4e-17 92.0 52 84.6
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.9e-17 91.7 52 86.5
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.9e-17 91.7 48 93.8
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 3.2e-17 90.9 52 86.5
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 3.2e-17 90.9 52 86.5
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 3.2e-17 90.9 52 84.6
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 3.2e-17 90.9 52 82.7
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 4.2e-17 90.5 52 82.7
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 4.2e-17 90.5 52 82.7
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 5.4e-17 90.1 50 88.0
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 5.4e-17 90.1 52 88.5
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 7.1e-17 89.7 52 80.8
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 7.1e-17 89.7 52 80.8
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 9.3e-17 89.4 49 87.8
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 9.3e-17 89.4 48 89.6
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 9.3e-17 89.4 48 89.6
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 9.3e-17 89.4 52 84.6
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 9.3e-17 89.4 52 80.8
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 1.2e-16 89.0 45 97.8
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.1e-16 88.2 52 82.7
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 2.1e-16 88.2 52 82.7
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 2.1e-16 88.2 50 84.0
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 2.1e-16 88.2 50 84.0
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 2.7e-16 87.8 50 86.0
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 7.9e-16 86.3 52 80.8
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.0e-15 85.9 52 78.8
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 1.8e-15 85.1 51 80.4
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 1.8e-15 85.1 52 78.8
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 3.9e-15 84.0 50 82.0
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 6.7e-15 83.2 52 78.8
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.9e-14 81.6 52 82.7
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.9e-14 81.6 52 82.7
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.9e-14 81.6 52 82.7
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.9e-14 81.6 52 82.7
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 3.3e-14 80.9 58 74.1
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 2.1e-13 78.2 47 78.7
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 2.1e-13 78.2 52 76.9
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 2.8e-13 77.8 52 73.1
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 6.2e-13 76.6 52 78.8
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 8.1e-13 76.3 45 80.0
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 4.0e-12 73.9 52 76.9
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.2e-10 68.2 37 91.9
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 3.8e-10 67.4 37 89.2
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 7.1e-09 63.2 50 60.0
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 6.0e-08 60.1 57 59.6
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 1.0e-07 59.3 33 87.9
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 6.7e-07 56.6 35 77.1
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 3.3e-06 54.3 82 41.5
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.6e-06 53.5 50 56.0
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.6e-06 53.5 50 56.0


User provided reference genes

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