Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020385 Carpinus fangiana HOM05D005769 ORTHO05D006851 2.5e-84 315.5 163 100.0
Haze_09647 Corylus avellana HOM05D005769 ORTHO05D006851 1.4e-79 299.7 163 95.7
QL08p012043 Quercus lobata HOM05D005769 ORTHO05D006851 2.4e-63 245.7 168 81.5
QL08p011874 Quercus lobata HOM05D005769 ORTHO05D006851 6.9e-63 244.2 168 81.0
CiPaw.11G187200 Carya illinoinensis HOM05D005769 ORTHO05D006851 4.5e-62 241.5 163 77.3
CiPaw.12G128000 Carya illinoinensis HOM05D005769 ORTHO05D006851 2.7e-59 232.3 163 76.7
Thecc.07G043800 Theobroma cacao HOM05D005769 ORTHO05D006851 2.8e-56 222.2 167 68.9
Potri.001G421000 Populus trichocarpa HOM05D005769 ORTHO05D006851 2.6e-54 215.7 164 70.1
Duzib170G0312 Durio zibethinus HOM05D005769 ORTHO05D006851 3.5e-54 215.3 167 67.7
Prupe.4G209200 Prunus persica HOM05D005769 ORTHO05D006851 1.7e-53 213.0 167 67.7
COL.COLO4_09632 Corchorus olitorius HOM05D005769 ORTHO05D006851 8.5e-53 210.7 169 64.5
MD11G1222100 Malus domestica HOM05D005769 ORTHO05D006851 5.5e-52 208.0 167 67.1
Dinv40735 Davidia involucrata HOM05D005769 ORTHO05D006851 4.7e-51 204.9 163 66.9
Duzib213G1024 Durio zibethinus HOM05D005769 ORTHO05D006851 1.0e-50 203.8 168 66.1
Sabra16G0285900 Salix brachista HOM05D005769 ORTHO05D006851 8.8e-50 200.7 163 66.9
Potri.011G136600 Populus trichocarpa HOM05D005769 ORTHO05D006851 1.1e-49 200.3 163 62.6
Cpa.g.sc97.35 Carica papaya HOM05D005769 ORTHO05D006851 4.4e-49 198.4 163 69.3
Gohir.D01G065000 Gossypium hirsutum HOM05D005769 ORTHO05D006851 7.4e-49 197.6 166 62.7
Gorai.002G086700 Gossypium raimondii HOM05D005769 ORTHO05D006851 7.4e-49 197.6 169 62.1
TWI38G1097 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 7.4e-49 197.6 164 65.9
Manes.03G126700 Manihot esculenta HOM05D005769 ORTHO05D006851 1.7e-48 196.4 163 63.2
Lalb_Chr04g0248581 Lupinus albus HOM05D005769 ORTHO05D006851 2.8e-48 195.7 169 60.4
PGR031G3409 Punica granatum HOM05D005769 ORTHO05D006851 6.3e-48 194.5 166 65.1
RcHm_v2.0_Chr5g0038281 Rosa chinensis HOM05D005769 ORTHO05D006851 2.4e-47 192.6 168 63.1
TWI39G0743 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 3.1e-47 192.2 167 61.1
TAR626G0147 Trochodendron aralioides HOM05D005769 ORTHO05D006851 1.2e-46 190.3 169 62.7
Gohir.A01G077900 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.0e-46 189.5 169 62.1
Atru.chr2.3278 Acer truncatum HOM05D005769 ORTHO05D006851 4.5e-46 188.3 167 64.1
Nn1g03582 Nelumbo nucifera HOM05D005769 ORTHO05D006851 4.5e-46 188.3 171 62.0
LjContig00351g0007061 Lotus japonicus HOM05D005769 ORTHO05D006851 1.3e-45 186.8 175 61.1
arahy.Tifrunner.gnm1.ann1.B7V00M Arachis hypogaea HOM05D005769 ORTHO05D006851 2.2e-45 186.0 170 60.0
FAN16G0333 Fragaria x ananassa HOM05D005769 ORTHO05D006851 2.9e-45 185.7 168 61.3
FAN21G0668 Fragaria x ananassa HOM05D005769 ORTHO05D006851 2.9e-45 185.7 168 61.3
VMungo0647G1996 Vigna mungo HOM05D005769 ORTHO05D006851 5.0e-45 184.9 175 59.4
FvH4_3g22210 Fragaria vesca HOM05D005769 ORTHO05D006851 1.1e-44 183.7 168 60.7
FAN11G0604 Fragaria x ananassa HOM05D005769 ORTHO05D006851 1.1e-44 183.7 168 60.7
Phvul.008G265600 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 1.5e-44 183.3 170 60.6
arahy.Tifrunner.gnm1.ann1.B9FWIC Arachis hypogaea HOM05D005769 ORTHO05D006851 1.9e-44 183.0 170 58.8
CANSAT21G1553 Cannabis sativa HOM05D005769 ORTHO05D006851 5.5e-44 181.4 166 60.8
FAN25G3736 Fragaria x ananassa HOM05D005769 ORTHO05D006851 5.5e-44 181.4 168 60.1
Lj4g0016834 Lotus japonicus HOM05D005769 ORTHO05D006851 5.5e-44 181.4 175 60.0
Hma1.2p1_1271F.1_g271830 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 7.2e-44 181.0 166 62.0
Hma1.2p1_1609F.1_g293426 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 7.2e-44 181.0 166 62.0
Ciclev10010329m.g Citrus clementina HOM05D005769 ORTHO05D006851 1.2e-43 180.3 167 60.5
Glyma.14G025400 Glycine max HOM05D005769 ORTHO05D006851 1.2e-43 180.3 174 60.9
Gorai.009G425000 Gossypium raimondii HOM05D005769 ORTHO05D006851 8.0e-43 177.6 164 59.8
Nitab4.5_0000749g0110 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.0e-42 177.2 166 59.6
Nitab4.5_0000653g0070 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.4e-42 176.8 166 59.6
Rhsim04G0001000 Rhododendron simsii HOM05D005769 ORTHO05D006851 1.4e-42 176.8 168 58.9
Ca_06306_v3 Cicer arietinum L. HOM05D005769 ORTHO05D006851 3.0e-42 175.6 179 58.7
Rhsim04G0002100 Rhododendron simsii HOM05D005769 ORTHO05D006851 4.0e-42 175.3 168 58.3
Gohir.D05G366600 Gossypium hirsutum HOM05D005769 ORTHO05D006851 6.8e-42 174.5 164 58.5
Manes.15G073700 Manihot esculenta HOM05D005769 ORTHO05D006851 1.5e-41 173.3 167 56.3
Gohir.A04G019100 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.6e-41 172.6 164 57.9
Medtr5g092090 Medicago truncatula HOM05D005769 ORTHO05D006851 3.4e-41 172.2 176 58.5
Peaxi162Scf01097g00025 Petunia axillaris HOM05D005769 ORTHO05D006851 1.3e-40 170.2 166 56.0
Lj6g0021335 Lotus japonicus HOM05D005769 ORTHO05D006851 3.7e-40 168.7 167 58.1
Lj1P869T51 Lonicera japonica HOM05D005769 ORTHO05D006851 3.1e-39 165.6 165 55.8
Lj8E167T2 Lonicera japonica HOM05D005769 ORTHO05D006851 7.0e-39 164.5 166 57.8
Oeu005460.1 Olea europaea HOM05D005769 ORTHO05D006851 3.5e-38 162.2 164 54.3
Cc05_g13510 Coffea canephora HOM05D005769 ORTHO05D006851 7.7e-38 161.0 163 55.8
Glyma.02G289500 Glycine max HOM05D005769 ORTHO05D006851 3.8e-37 158.7 172 54.1
THA.LOC104813420 Tarenaya hassleriana HOM05D005769 ORTHO05D006851 3.8e-37 158.7 164 54.3
PGSC0003DMG400014393 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.5e-36 156.8 167 53.9
PGSC0003DMG400001093 Solanum tuberosum HOM05D005769 ORTHO05D006851 7.2e-36 154.5 166 54.2
Nitab4.5_0000397g0340 Nicotiana tabacum HOM05D005769 ORTHO05D006851 2.1e-35 152.9 163 51.5
Peaxi162Scf00450g00084 Petunia axillaris HOM05D005769 ORTHO05D006851 2.1e-35 152.9 163 54.0
Sopen10g002310 Solanum pennellii HOM05D005769 ORTHO05D006851 2.7e-35 152.5 167 53.3
Solyc10g006360.2 Solanum lycopersicum HOM05D005769 ORTHO05D006851 1.8e-34 149.8 167 52.7
CAN.G337.106 Capsicum annuum HOM05D005769 ORTHO05D006851 1.2e-33 147.1 167 52.1
Aqoxy1G03294 Aquilegia oxysepala HOM05D005769 ORTHO05D006851 1.5e-33 146.7 170 50.6
Psat2g015240 Pisum sativum HOM05D005769 ORTHO05D006851 7.5e-33 144.4 180 51.1
Nitab4.5_0013016g0010 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.3e-32 143.7 155 51.6
MSTRG.6907 Avicennia marina HOM05D005769 ORTHO05D006851 1.7e-32 143.3 163 47.9
Glyma.18G101700 Glycine max HOM05D005769 ORTHO05D006851 3.7e-32 142.1 163 52.8
ClCG05G014450 Citrullus lanatus HOM05D005769 ORTHO05D006851 4.8e-32 141.7 165 48.5
VMungo0540G0361 Vigna mungo HOM05D005769 ORTHO05D006851 4.8e-32 141.7 162 52.5
unitig_0.g2389 Utricularia gibba HOM05D005769 ORTHO05D006851 6.3e-32 141.4 167 49.7
Migut.M01783 Erythranthe guttata HOM05D005769 ORTHO05D006851 8.3e-32 141.0 166 50.0
PGSC0003DMG400013920 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.8e-31 139.8 167 52.1
AL8G30290 Arabidopsis lyrata HOM05D005769 ORTHO05D006851 7.0e-31 137.9 209 45.5
Sopen07g032470 Solanum pennellii HOM05D005769 ORTHO05D006851 7.0e-31 137.9 167 51.5
Aa31LG3G10760 Aethionema arabicum HOM05D005769 ORTHO05D006851 9.1e-31 137.5 164 51.2
Solyc07g064320.3 Solanum lycopersicum HOM05D005769 ORTHO05D006851 9.1e-31 137.5 167 50.9
AT5G54850 Arabidopsis thaliana HOM05D005769 ORTHO05D006851 2.0e-30 136.3 208 43.8
BraA10t43314Z Brassica rapa HOM05D005769 ORTHO05D006851 3.5e-30 135.6 186 47.3
arahy.Tifrunner.gnm1.ann1.0M423A Arachis hypogaea HOM05D005769 ORTHO05D006851 4.5e-30 135.2 159 54.1
BcaC04g20292 Brassica carinata HOM05D005769 ORTHO05D006851 4.5e-30 135.2 186 47.3
C09p45400 Brassica napus HOM05D005769 ORTHO05D006851 4.5e-30 135.2 186 47.3
BolC9t57410H Brassica oleracea HOM05D005769 ORTHO05D006851 4.5e-30 135.2 186 47.3
PSO675G2145 Papaver somniferum HOM05D005769 ORTHO05D006851 1.0e-29 134.0 171 49.7
BcaB08g35851 Brassica carinata HOM05D005769 ORTHO05D006851 1.3e-29 133.7 188 47.3
Glyma.09G100100 Glycine max HOM05D005769 ORTHO05D006851 2.3e-29 132.9 160 50.6
Sed0023999 Sechium edule HOM05D005769 ORTHO05D006851 3.8e-29 132.1 166 44.6
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 6.6e-29 131.3 145 51.0
A10p12180 Brassica napus HOM05D005769 ORTHO05D006851 1.9e-28 129.8 216 43.1
PSO541G5959 Papaver somniferum HOM05D005769 ORTHO05D006851 2.5e-28 129.4 171 49.7
CARHR268180 Cardamine hirsuta HOM05D005769 ORTHO05D006851 1.2e-27 127.1 189 43.9
MELO3C018076.2 Cucumis melo HOM05D005769 ORTHO05D006851 1.6e-27 126.7 168 46.4
MBI18_g09843_MAGBIO Magnolia biondii HOM05D005769 ORTHO05D006851 1.6e-27 126.7 137 59.9
CsaV3_3G023280 Cucumis sativus L. HOM05D005769 ORTHO05D006851 2.1e-27 126.3 167 46.1
Sed0008399 Sechium edule HOM05D005769 ORTHO05D006851 3.6e-27 125.6 166 45.2
Migut.H01842 Erythranthe guttata HOM05D005769 ORTHO05D006851 4.7e-27 125.2 169 49.7
CSS0032413 Camellia sinensis var. sinensis HOM05D005769 ORTHO05D006851 6.1e-27 124.8 161 46.6
ECA236G2121 Erigeron canadensis HOM05D005769 ORTHO05D006851 8.0e-27 124.4 180 45.0
Phvul.006G038800 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 1.4e-26 123.6 160 51.9
Thhalv10014809m.g Eutrema salsugineum HOM05D005769 ORTHO05D006851 4.0e-26 122.1 188 43.6
Carub.0008s1514 Capsella rubella HOM05D005769 ORTHO05D006851 5.2e-26 121.7 186 44.6
Oeu062604.3 Olea europaea HOM05D005769 ORTHO05D006851 5.2e-26 121.7 136 52.2
Sc16g0006260 Simmondsia chinensis HOM05D005769 ORTHO05D006851 6.8e-26 121.3 208 44.2
SalBow7G1695 Salvia bowleyana HOM05D005769 ORTHO05D006851 8.9e-26 120.9 169 49.1
AUR62015707 Chenopodium quinoa HOM05D005769 ORTHO05D006851 1.2e-25 120.6 165 45.5
Sp6g16810 Schrenkiella parvula HOM05D005769 ORTHO05D006851 1.5e-25 120.2 190 43.2
AUR62020499 Chenopodium quinoa HOM05D005769 ORTHO05D006851 9.8e-25 117.5 168 45.2
PSO832G0238 Papaver somniferum HOM05D005769 ORTHO05D006851 4.9e-24 115.2 171 40.9
Actinidia09713 Actinidia chinensis HOM05D005769 ORTHO05D006851 6.3e-24 114.8 165 47.9
SGA_v2.0_scaffold8G04301 Striga asiatica HOM05D005769 ORTHO05D006851 8.3e-24 114.4 164 43.3
HanXRQChr11g0336271 Helianthus annuus HOM05D005769 ORTHO05D006851 4.1e-23 112.1 167 44.3
Hma1.2p1_1748F.1_g300680 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.0e-22 109.8 160 46.2
Hma1.2p1_0328F.1_g126860 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.7e-22 109.4 161 46.6
ECA234G1543 Erigeron canadensis HOM05D005769 ORTHO05D006851 3.5e-22 109.0 167 41.9
Zm00001eb322840 Zea mays HOM05D005769 ORTHO05D006851 1.7e-21 106.7 166 44.6
Lalb_Chr10g0106921 Lupinus albus HOM05D005769 ORTHO05D006851 7.3e-20 101.3 131 47.3
HPP92_014114 Vanilla planifolia HOM05D005769 ORTHO05D006851 4.7e-19 98.6 166 44.6
ATR0752G130 Amborella trichopoda HOM05D005769 ORTHO05D006851 4.0e-18 95.5 192 38.0
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.0e-17 93.2 156 41.0
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 3.4e-17 92.4 160 45.0
Lsat_1_v5_gn_5_125321 Lactuca sativa HOM05D005769 ORTHO05D006851 4.4e-17 92.0 164 37.8
Cc05_g04810 Coffea canephora HOM05D005769 ORTHO05D006851 2.9e-16 89.4 156 36.5
HanXRQChr05g0159131 Helianthus annuus HOM05D005769 ORTHO05D006851 1.3e-13 80.5 162 40.7
DCAR_021174 Daucus carota HOM05D005769 ORTHO05D006851 1.4e-10 70.5 156 35.9
HanXRQChr10g0305811 Helianthus annuus HOM05D005769 ORTHO05D006851 1.4e-10 70.5 135 36.3
Oeu021395.2 Olea europaea HOM05D005769 ORTHO05D006851 6.8e-10 68.2 161 32.9
HPP92_012322 Vanilla planifolia HOM05D005769 ORTHO05D006851 7.5e-09 64.7 155 32.3
HPP92_012395 Vanilla planifolia HOM05D005769 ORTHO05D006851 9.8e-09 64.3 155 31.0
CSS0021487 Camellia sinensis var. sinensis HOM05D068293 ORTHO05D006851 1.1e-07 60.8 71 54.9
CSS0038706 Camellia sinensis var. sinensis HOM05D068293 ORTHO05D006851 1.1e-07 60.8 73 53.4


User provided reference genes

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