Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 4.2e-133 478.0 237 100.0
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 6.0e-124 447.6 232 93.1
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 4.3e-122 441.4 235 91.9
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 4.3e-122 441.4 230 92.2
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 7.3e-122 440.7 230 92.6
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.3e-121 439.9 235 91.5
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 1.3e-121 439.9 230 91.3
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 1.6e-121 439.5 233 92.3
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 2.1e-121 439.1 235 91.5
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 2.8e-121 438.7 230 92.2
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 2.8e-121 438.7 230 92.2
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 3.6e-121 438.3 233 92.7
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 8.1e-121 437.2 228 93.4
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 1.1e-120 436.8 233 92.3
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 1.8e-120 436.0 235 91.1
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 2.4e-120 435.6 230 90.0
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 2.4e-120 435.6 231 91.3
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 3.1e-120 435.3 230 89.6
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 6.9e-120 434.1 243 88.9
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 6.9e-120 434.1 229 90.4
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 9.0e-120 433.7 231 90.9
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 1.5e-119 433.0 228 92.5
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 1.5e-119 433.0 228 91.7
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 2.0e-119 432.6 228 92.5
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 3.4e-119 431.8 229 89.5
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 5.8e-119 431.0 230 90.4
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 9.9e-119 430.3 230 89.1
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 9.9e-119 430.3 230 88.7
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 1.3e-118 429.9 234 88.9
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 1.3e-118 429.9 230 89.1
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 1.3e-118 429.9 230 90.0
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 3.8e-118 428.3 230 89.6
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 6.4e-118 427.6 230 90.0
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 8.4e-118 427.2 230 89.1
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 1.9e-117 426.0 230 88.3
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 2.4e-117 425.6 234 88.5
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 2.4e-117 425.6 234 88.5
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 2.4e-117 425.6 230 87.8
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 3.2e-117 425.2 231 87.9
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 7.1e-117 424.1 230 89.1
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 7.1e-117 424.1 234 88.0
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 1.2e-116 423.3 230 88.3
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 1.2e-116 423.3 231 87.0
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 1.6e-116 422.9 228 90.8
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 2.7e-116 422.2 230 87.0
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 2.7e-116 422.2 234 90.6
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 3.5e-116 421.8 235 86.0
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 3.5e-116 421.8 234 85.9
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 3.5e-116 421.8 232 88.8
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 4.6e-116 421.4 234 87.2
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 7.9e-116 420.6 231 87.0
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 7.9e-116 420.6 234 85.5
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 1.3e-115 419.9 234 87.6
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 1.8e-115 419.5 231 85.7
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 2.3e-115 419.1 231 87.0
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 2.3e-115 419.1 234 85.0
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 3.0e-115 418.7 234 85.0
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 5.1e-115 417.9 224 89.3
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 5.1e-115 417.9 234 85.9
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 6.7e-115 417.5 230 84.8
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 1.1e-114 416.8 231 86.1
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.1e-114 416.8 230 84.8
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 4.3e-114 414.8 235 83.4
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 4.3e-114 414.8 235 83.4
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 4.3e-114 414.8 229 85.2
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.3e-114 414.8 230 87.8
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 7.4e-114 414.1 277 76.9
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 1.6e-113 412.9 235 83.4
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 6.2e-113 411.0 252 80.6
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 1.1e-112 410.2 234 86.3
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.8e-112 409.5 240 82.9
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 3.1e-112 408.7 235 83.8
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 4.0e-112 408.3 230 85.2
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 6.9e-112 407.5 235 83.0
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 9.0e-112 407.1 235 83.0
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 9.0e-112 407.1 235 83.0
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 1.5e-111 406.4 235 83.0
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 1.5e-111 406.4 235 83.0
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 1.5e-111 406.4 224 87.5
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 2.6e-111 405.6 235 82.6
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 2.6e-111 405.6 227 85.9
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 5.8e-111 404.4 235 82.6
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 5.8e-111 404.4 235 82.6
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 1.3e-110 403.3 224 87.1
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 6.4e-110 401.0 227 84.1
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 1.1e-109 400.2 217 89.4
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 2.5e-109 399.1 253 78.7
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 5.5e-109 397.9 235 81.7
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 2.7e-108 395.6 232 80.2
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 7.9e-108 394.0 282 69.9
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 2.8e-105 385.6 243 76.1
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 8.2e-105 384.0 223 82.5
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 3.4e-103 378.6 229 79.0
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 6.5e-102 374.4 230 77.4
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 2.5e-101 372.5 232 74.1
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 3.0e-99 365.5 236 78.4
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 1.8e-96 356.3 238 74.4
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 1.8e-96 356.3 227 75.8
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 1.2e-95 353.6 233 69.5
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 5.9e-95 351.3 235 77.0
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 5.9e-95 351.3 196 86.2
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 6.5e-94 347.8 194 89.2
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 1.9e-93 346.3 223 75.3
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 2.5e-90 335.9 175 92.0
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.7e-89 333.2 234 72.2
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 3.2e-85 318.9 230 71.3
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 4.2e-85 318.5 222 68.9
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 5.7e-82 308.1 271 61.3
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 9.7e-82 307.4 190 78.9
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 9.4e-77 290.8 171 83.0
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 3.3e-74 282.3 202 70.8
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 2.2e-73 279.6 185 75.1
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 1.4e-67 260.4 229 53.7
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 6.8e-67 258.1 135 91.9
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 5.0e-62 241.9 234 51.7
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 1.5e-61 240.4 196 62.8
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 2.1e-60 236.5 195 65.1
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 1.7e-57 226.9 136 77.9
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.3e-54 216.5 122 85.2
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 1.2e-50 204.1 234 50.9
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 4.9e-49 198.7 112 84.8
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 6.1e-44 181.8 96 86.5
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 1.4e-43 180.6 211 47.4
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 8.9e-43 177.9 96 84.4
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 3.7e-41 172.6 158 63.3
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 2.7e-39 166.4 100 84.0
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 6.0e-39 165.2 83 92.8
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 5.0e-38 162.2 100 77.0
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 2.5e-37 159.8 237 35.4
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 1.7e-30 137.1 128 58.6
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.2e-18 97.8 65 64.6
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 9.9e-18 94.7 98 51.0
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 4.2e-16 89.4 137 44.5
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 3.0e-14 83.2 56 73.2
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 5.1e-14 82.4 44 81.8
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 6.4e-09 65.5 30 93.3
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 7.9e-07 58.5 39 71.8


User provided reference genes

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