Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020361 Carpinus fangiana HOM05D004888 ORTHO05D005792 2.8e-39 164.9 85 100.0
Haze_09660 Corylus avellana HOM05D004888 ORTHO05D005792 5.8e-29 130.6 67 98.5
CiPaw.12G128800 Carya illinoinensis HOM05D004888 ORTHO05D005792 1.9e-27 125.6 67 92.5
ClCG05G014360 Citrullus lanatus HOM05D004888 ORTHO05D005792 4.6e-26 120.9 67 86.6
MELO3C030728.2 Cucumis melo HOM05D004888 ORTHO05D005792 1.3e-25 119.4 66 86.4
TWI38G0633 Tripterygium wilfordii HOM05D004888 ORTHO05D005792 1.8e-25 119.0 71 81.7
TWI39G0566 Tripterygium wilfordii HOM05D004888 ORTHO05D005792 2.3e-25 118.6 67 85.1
QL08p010712 Quercus lobata HOM05D004888 ORTHO05D005792 3.0e-25 118.2 66 86.4
QL08p011155 Quercus lobata HOM05D004888 ORTHO05D005792 3.0e-25 118.2 66 86.4
Sed0022426 Sechium edule HOM05D004888 ORTHO05D005792 3.0e-25 118.2 66 84.8
COL.COLO4_09650 Corchorus olitorius HOM05D004888 ORTHO05D005792 5.1e-25 117.5 67 85.1
Duzib213G0117 Durio zibethinus HOM05D004888 ORTHO05D005792 6.7e-25 117.1 79 74.7
Duzib268G1286 Durio zibethinus HOM05D004888 ORTHO05D005792 6.7e-25 117.1 79 73.4
MD11G1221000 Malus domestica HOM05D004888 ORTHO05D005792 8.7e-25 116.7 67 85.1
CsaV3_3G023050 Cucumis sativus L. HOM05D004888 ORTHO05D005792 1.1e-24 116.3 66 83.3
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 1.1e-24 116.3 79 75.9
Cc05_g13810 Coffea canephora HOM05D004888 ORTHO05D005792 4.3e-24 114.4 66 84.8
GSVIVG01037626001 Vitis vinifera HOM05D004888 ORTHO05D005792 5.6e-24 114.0 67 83.6
Medtr5g092160 Medicago truncatula HOM05D004888 ORTHO05D005792 1.3e-23 112.8 65 84.6
Prupe.4G211200 Prunus persica HOM05D004888 ORTHO05D005792 1.3e-23 112.8 67 80.6
FAN21G0776 Fragaria x ananassa HOM05D004888 ORTHO05D005792 1.6e-23 112.5 67 82.1
FAN25G0554 Fragaria x ananassa HOM05D000287 ORTHO05D002423 1.6e-23 112.5 67 82.1
TPR.G1165 Trifolium pratense HOM05D004888 ORTHO05D005792 1.6e-23 112.5 65 84.6
Ciclev10009934m.g Citrus clementina HOM05D004888 ORTHO05D005792 2.8e-23 111.7 67 76.1
FvH4_3g22450 Fragaria vesca HOM05D004888 ORTHO05D005792 2.8e-23 111.7 67 80.6
FAN11G0846 Fragaria x ananassa HOM05D000287 ORTHO05D002423 2.8e-23 111.7 67 80.6
RcHm_v2.0_Chr5g0039111 Rosa chinensis HOM05D004888 ORTHO05D005792 2.8e-23 111.7 67 82.1
TAR627G0539 Trochodendron aralioides HOM05D004888 ORTHO05D005792 2.8e-23 111.7 67 82.1
Sed0003457 Sechium edule HOM05D004888 ORTHO05D005792 3.7e-23 111.3 67 76.1
arahy.Tifrunner.gnm1.ann1.7UQ7HQ Arachis hypogaea HOM05D004888 ORTHO05D005792 4.8e-23 110.9 71 73.2
arahy.Tifrunner.gnm1.ann1.UMZK2D Arachis hypogaea HOM05D004888 ORTHO05D005792 4.8e-23 110.9 71 73.2
Atru.chr2.3374 Acer truncatum HOM05D004888 ORTHO05D005792 6.2e-23 110.5 68 77.9
Cpa.g.sc97.18 Carica papaya HOM05D004888 ORTHO05D005792 6.2e-23 110.5 67 74.6
Gohir.A04G018500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 6.2e-23 110.5 79 72.2
Gohir.D05G367500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 6.2e-23 110.5 79 72.2
Gorai.009G435100 Gossypium raimondii HOM05D004888 ORTHO05D005792 6.2e-23 110.5 79 72.2
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 6.2e-23 110.5 79 72.2
THA.LOC104817873 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 6.2e-23 110.5 76 68.4
Glyma.14G024900 Glycine max HOM05D004888 ORTHO05D005792 8.2e-23 110.2 67 80.6
Oeu007587.1 Olea europaea HOM05D004888 ORTHO05D005792 8.2e-23 110.2 67 79.1
Phvul.008G266100 Phaseolus vulgaris HOM05D004888 ORTHO05D005792 8.2e-23 110.2 67 80.6
Psat2g013600 Pisum sativum HOM05D004888 ORTHO05D005792 1.1e-22 109.8 77 71.4
Aqoxy1G03261 Aquilegia oxysepala HOM05D004888 ORTHO05D005792 1.4e-22 109.4 79 69.6
Ciclev10009938m.g Citrus clementina HOM05D004888 ORTHO05D005792 1.4e-22 109.4 67 74.6
Sc03g0008650 Simmondsia chinensis HOM05D004888 ORTHO05D005792 1.4e-22 109.4 76 71.1
Solyc07g064470.4 Solanum lycopersicum HOM05D004888 ORTHO05D005792 1.4e-22 109.4 66 81.8
Sopen07g032670 Solanum pennellii HOM05D004888 ORTHO05D005792 1.4e-22 109.4 66 81.8
Duzib170G0778 Durio zibethinus HOM05D004888 ORTHO05D005792 1.8e-22 109.0 79 70.9
Duzib170G1055 Durio zibethinus HOM05D004888 ORTHO05D005792 1.8e-22 109.0 79 70.9
MD03G1204200 Malus domestica HOM05D004888 ORTHO05D005792 1.8e-22 109.0 67 79.1
AUR62015745 Chenopodium quinoa HOM05D004888 ORTHO05D005792 2.4e-22 108.6 67 80.6
vmacro11732 Vaccinium macrocarpon HOM05D004888 ORTHO05D005792 2.4e-22 108.6 66 81.8
CSS0004402 Camellia sinensis var. sinensis HOM05D004888 ORTHO05D005792 3.1e-22 108.2 66 80.3
Ca_06312_v3 Cicer arietinum L. HOM05D004888 ORTHO05D005792 3.1e-22 108.2 65 80.0
Dinv40745 Davidia involucrata HOM05D004888 ORTHO05D005792 3.1e-22 108.2 66 78.8
AUR62020467 Chenopodium quinoa HOM05D004888 ORTHO05D005792 4.0e-22 107.8 67 80.6
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 4.0e-22 107.8 68 77.9
Nitab4.5_0001913g0080 Nicotiana tabacum HOM05D004888 ORTHO05D005792 4.0e-22 107.8 70 77.1
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 5.3e-22 107.5 79 69.6
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 5.3e-22 107.5 79 69.6
Nitab4.5_0003812g0040 Nicotiana tabacum HOM05D004888 ORTHO05D005792 5.3e-22 107.5 66 80.3
Peaxi162Scf00387g00025 Petunia axillaris HOM05D004888 ORTHO05D005792 5.3e-22 107.5 79 65.8
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 5.3e-22 107.5 68 77.9
CAN.G337.120 Capsicum annuum HOM05D004888 ORTHO05D005792 9.0e-22 106.7 66 80.3
Oeu020120.2 Olea europaea HOM05D004888 ORTHO05D005792 9.0e-22 106.7 79 68.4
Rhsim06G0216300 Rhododendron simsii HOM05D004888 ORTHO05D005792 9.0e-22 106.7 76 68.4
Hund23258 Selenicereus undatus HOM05D004888 ORTHO05D005792 9.0e-22 106.7 68 75.0
Sabra16G0288800 Salix brachista HOM05D004888 ORTHO05D005792 1.2e-21 106.3 67 77.6
THA.LOC104798774 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 1.2e-21 106.3 77 71.4
EL10Ac4g07839 Beta vulgaris HOM05D004888 ORTHO05D005792 1.5e-21 105.9 67 79.1
Manes.03G124500 Manihot esculenta HOM05D004888 ORTHO05D005792 1.5e-21 105.9 67 77.6
PSO541G5647 Papaver somniferum HOM05D004888 ORTHO05D005792 1.5e-21 105.9 67 77.6
PSO675G7988 Papaver somniferum HOM05D004888 ORTHO05D005792 1.5e-21 105.9 67 77.6
Peaxi162Scf00964g00141 Petunia axillaris HOM05D004888 ORTHO05D005792 1.5e-21 105.9 66 78.8
Potri.001G424000 Populus trichocarpa HOM05D004888 ORTHO05D005792 2.0e-21 105.5 67 77.6
PGR031G1607 Punica granatum HOM05D004888 ORTHO05D005792 2.0e-21 105.5 68 73.5
ATR0752G132 Amborella trichopoda HOM05D004888 ORTHO05D005792 2.6e-21 105.1 66 77.3
CANSAT10G0001 Cannabis sativa HOM05D004888 ORTHO05D005792 2.6e-21 105.1 67 76.1
CANSAT21G1950 Cannabis sativa HOM05D004888 ORTHO05D005792 2.6e-21 105.1 67 76.1
Carub.0003s2047 Capsella rubella HOM05D004888 ORTHO05D005792 2.6e-21 105.1 77 62.3
PGSC0003DMG400022222 Solanum tuberosum HOM05D004888 ORTHO05D005792 2.6e-21 105.1 66 78.8
Actinidia36945 Actinidia chinensis HOM05D004888 ORTHO05D005792 3.4e-21 104.8 66 78.8
Ah.04g165810 Amaranthus hybridus HOM05D004888 ORTHO05D005792 3.4e-21 104.8 67 77.6
Manes.15G072900 Manihot esculenta HOM05D004888 ORTHO05D005792 3.4e-21 104.8 67 74.6
Sopen10g002260 Solanum pennellii HOM05D004888 ORTHO05D005792 3.4e-21 104.8 67 76.1
Solyc10g006310.3 Solanum lycopersicum HOM05D004888 ORTHO05D005792 4.5e-21 104.4 67 74.6
Aa31LG8G7320 Aethionema arabicum HOM05D004888 ORTHO05D005792 5.8e-21 104.0 77 67.5
A03p41780 Brassica napus HOM05D001160 ORTHO05D005792 5.8e-21 104.0 77 64.9
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 5.8e-21 104.0 67 73.1
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 5.8e-21 104.0 66 75.8
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 5.8e-21 104.0 68 72.1
VMungo0647G2125 Vigna mungo HOM05D004888 ORTHO05D005792 5.8e-21 104.0 66 77.3
LjContig00272g0005832 Lotus japonicus HOM05D004888 ORTHO05D005792 7.6e-21 103.6 67 76.1
BcaC01g03552 Brassica carinata HOM05D001160 ORTHO05D001092 1.3e-20 102.8 77 63.6
BolC3t17405H Brassica oleracea HOM05D001160 ORTHO05D001092 1.3e-20 102.8 77 63.6
Hma1.2p1_1222F.1_g268220 Hydrangea macrophylla HOM05D004888 ORTHO05D005792 1.3e-20 102.8 76 65.8
Nn1g07117 Nelumbo nucifera HOM05D004888 ORTHO05D005792 1.3e-20 102.8 66 74.2
AT3G20510 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 1.7e-20 102.4 77 62.3
DCAR_010046 Daucus carota HOM05D004888 ORTHO05D005792 1.7e-20 102.4 67 73.1
Eucgr.F03460 Eucalyptus grandis HOM05D004888 ORTHO05D005792 1.7e-20 102.4 67 74.6
Sabra11G0123700 Salix brachista HOM05D004888 ORTHO05D005792 1.7e-20 102.4 67 74.6
Sp3g18510 Schrenkiella parvula HOM05D004888 ORTHO05D005792 1.7e-20 102.4 77 63.6
Hund02067 Selenicereus undatus HOM05D004888 ORTHO05D005792 1.7e-20 102.4 67 74.6
Actinidia05101 Actinidia chinensis HOM05D004888 ORTHO05D005792 2.2e-20 102.1 66 78.8
Thhalv10021782m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 3.8e-20 101.3 77 62.3
AL3G34290 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 4.9e-20 100.9 77 61.0
CARHR096270 Cardamine hirsuta HOM05D004888 ORTHO05D005792 4.9e-20 100.9 77 59.7
BcaNung06349 Brassica carinata HOM05D004888 ORTHO05D005792 6.5e-20 100.5 77 62.3
ECA236G1052 Erigeron canadensis HOM05D004888 ORTHO05D005792 6.5e-20 100.5 68 67.6
MBI18_g28089_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 6.5e-20 100.5 79 64.6
Lalb_Chr04g0248511 Lupinus albus HOM05D004888 ORTHO05D005792 8.4e-20 100.1 67 73.1
Zm00001eb048800 Zea mays HOM05D004888 ORTHO05D005792 8.4e-20 100.1 67 68.7
Zm00001eb219860 Zea mays HOM05D004888 ORTHO05D005792 8.4e-20 100.1 66 69.7
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 1.1e-19 99.8 67 73.1
A05p28330 Brassica napus HOM05D001160 ORTHO05D001092 1.4e-19 99.4 77 62.3
Lsat_1_v5_gn_7_108760 Lactuca sativa HOM05D004888 ORTHO05D005792 1.4e-19 99.4 68 67.6
BcaB04g19111 Brassica carinata HOM05D004888 ORTHO05D005792 1.9e-19 99.0 77 61.0
CARHR040840 Cardamine hirsuta HOM05D004888 ORTHO05D005792 2.5e-19 98.6 68 66.2
Os03g0568500 Oryza sativa ssp. japonica HOM05D004888 ORTHO05D005792 2.5e-19 98.6 67 68.7
BolC5t33098H Brassica oleracea HOM05D004888 ORTHO05D005792 3.2e-19 98.2 77 62.3
CDE05G3279 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 3.2e-19 98.2 77 64.9
Thhalv10011871m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 4.2e-19 97.8 77 62.3
AT1G50740 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 5.5e-19 97.4 68 66.2
BraA05t21716Z Brassica rapa HOM05D001160 ORTHO05D001092 5.5e-19 97.4 77 61.0
HanXRQChr11g0336191 Helianthus annuus HOM05D004888 ORTHO05D005792 5.5e-19 97.4 67 68.7
C05p43820 Brassica napus HOM05D001160 ORTHO05D001092 7.1e-19 97.1 77 61.0
CDE11G1067 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 7.1e-19 97.1 77 64.9
Aa31LG10G3270 Aethionema arabicum HOM05D004888 ORTHO05D005792 1.6e-18 95.9 76 61.8
AL1G58480 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 1.6e-18 95.9 68 64.7
MBI18_g45255_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 2.1e-18 95.5 66 68.2
MSTRG.6911 Avicennia marina HOM05D004888 ORTHO05D005792 1.0e-17 93.2 68 69.1
Cfa020359 Carpinus fangiana HOM05D000232 ORTHO05D000145 1.0e-17 93.2 46 97.8
Mapoly0043s0001 Marchantia polymorpha HOM05D004888 ORTHO05D005792 1.3e-17 92.8 76 57.9
SHI31853 Sapria himalayana HOM05D004888 ORTHO05D005792 1.3e-17 92.8 83 56.6
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 1.5e-16 89.4 69 62.3
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 1.5e-16 89.4 69 62.3
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 1.5e-16 89.4 69 62.3
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 3.3e-16 88.2 69 62.3
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 4.3e-16 87.8 69 60.9
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 4.3e-16 87.8 69 60.9
HanXRQChr09g0242141 Helianthus annuus HOM05D004888 ORTHO05D005792 5.7e-16 87.4 67 62.7
SMO270G0016 Selaginella moellendorffii HOM05D004888 ORTHO05D005792 7.4e-16 87.0 71 57.7
Pp3c25_1060 Physcomitrium patens HOM05D004888 ORTHO05D005792 1.8e-14 82.4 71 57.7
CBR_g50174 Chara braunii HOM05D004888 ORTHO05D005792 1.3e-12 76.3 76 50.0
HPP92_001782 Vanilla planifolia HOM05D004888 ORTHO05D005792 1.3e-12 76.3 67 53.7
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 2.9e-12 75.1 68 52.9
Nn1g03567 Nelumbo nucifera HOM05D004888 ORTHO05D005792 6.5e-12 73.9 66 56.1
Nitab4.5_0005048g0090 Nicotiana tabacum HOM05D004888 ORTHO05D005792 1.1e-11 73.2 44 75.0
Sp7g03160 Schrenkiella parvula HOM05D004888 ORTHO05D005792 6.1e-10 67.4 41 70.7
CBR_g47126 Chara braunii HOM05D004956 ORTHO05D006284 2.3e-09 65.5 84 42.9
RcHm_v2.0_Chr7g0216541 Rosa chinensis HOM05D004888 ORTHO05D005792 3.0e-09 65.1 54 63.0
Zm00001eb106080 Zea mays HOM05D004888 ORTHO05D005792 1.9e-08 62.4 76 50.0
Sc07g0006180 Simmondsia chinensis HOM05D004888 ORTHO05D005792 7.4e-08 60.5 79 46.8
Sc16g0006350 Simmondsia chinensis HOM05D004888 ORTHO05D005792 7.4e-08 60.5 70 41.4
Gohir.A01G079000 Gossypium hirsutum HOM05D004888 ORTHO05D005792 4.8e-07 57.8 51 62.7
Sc16g0006310 Simmondsia chinensis HOM05D004888 ORTHO05D005792 6.3e-07 57.4 79 38.0
MCO11G307 Micromonas commoda HOM05D004888 ORTHO05D005792 8.2e-07 57.0 73 38.4
SMO356G0722 Selaginella moellendorffii HOM05D004956 ORTHO05D006284 5.3e-06 54.3 58 44.8


User provided reference genes

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