Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.2e-242 842.8 442 100.0
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 4.9e-228 794.3 450 92.7
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 6.0e-202 707.6 450 85.8
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 1.5e-157 560.1 461 67.0
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 4.2e-155 552.0 461 65.9
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 7.5e-136 488.0 442 62.0
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 1.8e-121 440.3 449 56.1
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 1.6e-117 427.2 454 54.8
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 3.3e-115 419.5 454 52.0
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 3.0e-108 396.4 440 50.5
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 8.1e-106 388.3 444 51.4
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 6.8e-105 385.2 440 50.5
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 6.4e-103 378.6 441 51.5
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 1.1e-102 377.9 452 50.9
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 5.4e-102 375.6 447 49.0
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 7.1e-102 375.2 446 50.0
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 1.3e-100 370.9 446 50.4
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 3.9e-100 369.4 441 51.7
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 5.1e-100 369.0 438 49.3
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 2.5e-99 366.7 441 50.3
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 2.1e-98 363.6 441 50.6
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.8e-97 360.5 437 50.1
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 3.1e-97 359.8 437 49.9
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 2.6e-96 356.7 440 47.5
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 4.4e-96 355.9 436 49.1
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 9.9e-96 354.8 493 46.0
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 2.9e-95 353.2 441 48.3
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 6.4e-95 352.1 439 49.2
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 6.0e-93 345.5 444 47.7
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 6.0e-93 345.5 435 47.8
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 6.6e-92 342.0 439 48.3
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 1.3e-90 337.8 451 46.1
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 5.3e-89 332.4 438 46.8
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 1.2e-88 331.3 438 46.3
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 2.0e-88 330.5 441 46.3
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 9.9e-88 328.2 435 45.1
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 2.9e-87 326.6 441 46.3
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.9e-87 325.9 438 46.1
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 3.2e-86 323.2 428 46.3
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 2.7e-85 320.1 439 44.2
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 3.5e-85 319.7 444 43.9
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 7.9e-85 318.5 432 46.1
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 4.8e-82 309.3 443 43.3
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 8.1e-82 308.5 443 43.6
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 1.8e-81 307.4 433 43.4
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 6.9e-81 305.4 439 43.1
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 7.6e-80 302.0 439 42.1
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 7.1e-78 295.4 445 42.2
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 7.1e-78 295.4 435 42.5
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 1.3e-76 291.2 435 43.0
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 2.3e-76 290.4 438 42.2
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 3.0e-76 290.0 439 41.9
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 4.3e-75 286.2 437 41.9
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 1.6e-74 284.3 437 43.0
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 2.8e-74 283.5 432 42.4
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.8e-74 283.5 422 43.4
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 6.2e-74 282.3 438 41.6
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 2.4e-73 280.4 433 41.1
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 2.6e-72 276.9 447 41.4
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 2.6e-72 276.9 434 42.2
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 1.0e-71 275.0 439 38.3
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 1.0e-71 275.0 425 42.4
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 1.3e-71 274.6 439 42.8
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 1.7e-71 274.2 436 42.0
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 2.2e-71 273.9 445 41.8
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 3.8e-71 273.1 447 41.4
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 5.5e-70 269.2 436 41.3
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 9.3e-70 268.5 437 41.9
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 6.0e-69 265.8 440 40.9
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.0e-68 265.0 448 38.2
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.8e-68 264.2 442 38.5
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 2.3e-68 263.8 435 39.8
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 6.7e-68 262.3 441 39.5
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 1.5e-67 261.2 431 39.9
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.9e-67 260.8 202 66.8
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 2.5e-67 260.4 567 35.4
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 3.3e-67 260.0 431 39.7
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 5.7e-67 259.2 431 39.4
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 2.1e-66 257.3 434 38.5
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 2.8e-66 256.9 430 39.8
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 2.8e-66 256.9 430 39.8
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 1.1e-65 255.0 434 38.7
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 1.1e-65 255.0 431 41.3
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 1.7e-63 247.7 394 37.8
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 2.2e-63 247.3 488 35.5
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 5.0e-63 246.1 428 38.6
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.4e-62 244.6 435 39.8
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 1.9e-62 244.2 429 39.9
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.9e-62 244.2 413 40.2
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.9e-60 236.5 438 38.6
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 9.7e-59 231.9 442 37.6
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 3.7e-58 229.9 490 33.9
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.8e-57 227.6 374 40.6
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 1.2e-56 224.9 202 58.4
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 1.0e-55 221.9 440 35.9
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.3e-55 221.5 384 39.6
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.8e-55 219.9 418 38.3
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 3.2e-54 216.9 198 57.1
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 1.2e-53 214.9 208 57.7
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 3.6e-53 213.4 197 59.4
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 1.1e-49 201.8 213 50.7
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 3.9e-44 183.3 169 54.4
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 4.1e-41 173.3 157 56.7
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 2.1e-37 161.0 147 58.5
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 2.1e-37 161.0 123 65.9
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 4.7e-37 159.8 383 30.3
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 1.6e-32 144.8 329 35.0
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 2.7e-29 134.0 142 54.2
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 6.8e-28 129.4 77 79.2
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 7.5e-27 125.9 426 28.6
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 1.7e-23 114.8 89 60.7
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 2.2e-23 114.4 120 50.8
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 3.8e-23 113.6 118 50.0
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 1.1e-22 112.1 86 62.8
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 3.2e-22 110.5 91 58.2
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 9.4e-22 109.0 141 41.8
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 6.1e-21 106.3 137 43.1
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 2.2e-18 97.8 95 48.4
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 2.0e-16 91.3 55 76.4
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 3.3e-14 84.0 64 62.5
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 4.3e-14 83.6 160 35.0
Haze_06347 Corylus avellana HOM05D007003 ORTHO05D008499 1.5e-06 58.5 36 75.0


User provided reference genes

Program Settings