Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 2.9e-200 701.8 384 100.0
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 4.0e-170 601.7 381 86.1
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 3.4e-169 598.6 382 83.8
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 4.9e-168 594.7 376 83.5
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 5.8e-161 571.2 388 80.2
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 3.8e-160 568.5 379 79.4
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 4.9e-160 568.2 379 79.4
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.1e-158 562.8 379 81.8
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 7.9e-158 560.8 378 78.3
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 8.7e-157 557.4 437 76.7
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 8.7e-157 557.4 379 82.3
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 4.3e-156 555.1 386 78.0
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 2.1e-155 552.7 388 78.4
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 3.7e-155 552.0 380 78.2
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 3.7e-155 552.0 388 82.2
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 1.1e-154 550.4 388 78.1
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 1.8e-154 549.7 385 77.7
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.2e-153 547.0 388 76.0
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 1.5e-153 546.6 384 81.0
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 1.5e-153 546.6 388 78.6
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 2.0e-153 546.2 384 76.0
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 3.4e-153 545.4 383 79.6
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 4.5e-153 545.0 384 79.9
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 1.0e-152 543.9 386 79.8
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 1.0e-152 543.9 386 81.3
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 1.7e-152 543.1 388 76.0
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.2e-152 542.7 386 79.0
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.8e-152 542.0 379 79.2
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 7.2e-151 537.7 386 78.8
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 3.5e-150 535.4 381 79.3
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 7.9e-150 534.3 385 75.3
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 1.8e-149 533.1 385 76.6
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 1.8e-149 533.1 385 74.5
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.3e-149 532.7 390 75.4
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 3.0e-149 532.3 388 74.5
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 3.9e-149 531.9 385 75.1
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 7.4e-148 527.7 422 73.2
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 3.7e-147 525.4 395 76.5
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 4.8e-147 525.0 394 73.1
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 6.3e-147 524.6 379 78.1
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 1.1e-146 523.9 385 74.3
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 1.4e-146 523.5 385 73.5
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 1.4e-146 523.5 385 73.5
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 5.3e-146 521.5 385 74.3
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 5.3e-146 521.5 385 73.0
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 3.4e-145 518.8 386 79.0
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 4.5e-145 518.5 383 78.9
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 1.3e-144 516.9 385 77.9
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 1.7e-144 516.5 385 72.2
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 2.9e-144 515.8 376 73.7
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 5.0e-144 515.0 379 74.1
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 6.5e-144 514.6 385 74.5
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 6.5e-144 514.6 385 74.5
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 8.5e-144 514.2 385 77.9
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 8.5e-144 514.2 383 73.4
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 1.1e-143 513.8 374 75.4
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 1.4e-143 513.5 385 74.3
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 1.4e-143 513.5 385 74.8
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 1.4e-143 513.5 385 74.3
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 1.4e-143 513.5 385 74.3
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 4.2e-143 511.9 380 73.9
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 7.2e-143 511.1 384 72.4
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 2.7e-142 509.2 430 67.9
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 6.1e-142 508.1 389 76.6
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 1.8e-141 506.5 379 77.3
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 2.3e-141 506.1 378 71.7
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 3.0e-141 505.8 375 70.7
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 1.5e-140 503.4 373 71.6
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 2.0e-140 503.1 379 72.0
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 2.5e-140 502.7 385 73.2
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 4.3e-140 501.9 385 73.2
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 1.7e-139 500.0 379 73.6
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 2.2e-139 499.6 373 71.3
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 2.2e-139 499.6 384 71.1
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 8.2e-139 497.7 385 73.0
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 8.2e-139 497.7 381 68.5
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 1.1e-138 497.3 397 70.8
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 1.4e-138 496.9 385 72.7
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 1.5e-137 493.4 385 72.2
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.6e-137 492.7 378 74.3
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 3.4e-137 492.3 375 70.7
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 4.5e-137 491.9 387 69.0
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 5.9e-137 491.5 384 72.1
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 5.0e-136 488.4 375 70.1
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 1.1e-135 487.3 384 72.1
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 2.5e-135 486.1 402 66.9
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 7.2e-135 484.6 386 69.7
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 9.4e-135 484.2 379 75.2
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 4.7e-134 481.9 383 67.4
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 7.9e-134 481.1 388 68.3
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 7.9e-134 481.1 388 68.3
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.8e-133 479.9 420 66.9
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 5.1e-133 478.4 374 67.9
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 2.6e-132 476.1 388 66.5
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 5.7e-132 474.9 389 66.8
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 8.2e-131 471.1 403 67.0
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 2.4e-130 469.5 375 68.3
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 1.6e-129 466.8 382 69.1
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 3.5e-129 465.7 370 65.7
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 7.7e-129 464.5 336 72.9
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 2.2e-128 463.0 383 72.8
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 1.1e-127 460.7 381 65.9
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 3.2e-127 459.1 466 57.5
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 4.7e-126 455.3 421 67.5
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 1.8e-125 453.4 399 67.9
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 9.7e-124 447.6 382 63.9
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 5.0e-120 435.3 335 76.4
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 2.5e-119 433.0 426 59.6
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 6.1e-118 428.3 341 68.9
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 1.2e-116 424.1 367 62.7
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 4.4e-116 422.2 344 66.9
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 4.8e-115 418.7 367 62.1
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 7.0e-114 414.8 386 61.7
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 7.2e-111 404.8 391 58.8
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 4.7e-110 402.1 273 82.1
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 2.3e-109 399.8 315 69.5
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 4.0e-109 399.1 379 61.5
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 4.4e-108 395.6 349 61.9
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.4e-106 390.6 319 69.0
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 2.9e-104 382.9 368 62.2
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 6.1e-102 375.2 368 56.2
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 2.3e-101 373.2 402 52.7
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 1.5e-100 370.5 347 63.1
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 7.5e-100 368.2 376 55.1
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 8.3e-99 364.8 386 54.1
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 8.0e-94 348.2 383 51.4
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 7.3e-79 298.5 384 51.8
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 1.1e-63 248.1 221 63.3
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 5.6e-47 192.6 337 37.1
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 3.8e-43 179.9 381 34.9
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 9.6e-39 165.2 198 57.1
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 2.2e-19 100.9 56 83.9
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 8.0e-09 65.9 49 69.4
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 3.3e-07 60.5 42 73.8
arahy.Tifrunner.gnm1.ann1.C7XXCR Arachis hypogaea HOM05D005555 ORTHO05D082991 3.7e-06 57.0 63 52.4


User provided reference genes

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