Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020325 Carpinus fangiana HOM05D007013 ORTHO05D008999 5.2e-229 797.3 398 100.0
Haze_09698 Corylus avellana HOM05D007013 ORTHO05D008999 7.6e-188 660.6 340 96.2
CiPaw.12G131100 Carya illinoinensis HOM05D007013 ORTHO05D008999 1.0e-176 623.6 390 80.5
QL08p009594 Quercus lobata HOM05D007013 ORTHO05D008999 3.3e-175 618.6 398 78.6
Potri.001G418800 Populus trichocarpa HOM05D007013 ORTHO05D008999 4.1e-157 558.5 397 69.3
Atru.chr2.3453 Acer truncatum HOM05D007013 ORTHO05D008999 1.0e-155 553.9 393 69.0
Ciclev10008561m.g Citrus clementina HOM05D007013 ORTHO05D008999 2.5e-154 549.3 392 68.9
Duzib213G0396 Durio zibethinus HOM05D007013 ORTHO05D008999 1.2e-153 547.0 389 68.6
GSVIVG01037670001 Vitis vinifera HOM05D007013 ORTHO05D008999 1.6e-153 546.6 398 68.3
TAR624G0955 Trochodendron aralioides HOM05D007013 ORTHO05D008999 5.7e-151 538.1 400 67.0
Thecc.07G033700 Theobroma cacao HOM05D007013 ORTHO05D008999 4.8e-150 535.0 398 66.6
CANSAT11G0669 Cannabis sativa HOM05D007013 ORTHO05D008999 2.6e-148 529.3 389 66.6
MD11G1215400 Malus domestica HOM05D007013 ORTHO05D008999 1.3e-147 526.9 389 67.4
RcHm_v2.0_Chr5g0033071 Rosa chinensis HOM05D007013 ORTHO05D008999 1.1e-146 523.9 388 66.0
FvH4_3g19730 Fragaria vesca HOM05D007013 ORTHO05D008999 1.0e-144 517.3 386 65.8
TWI38G0247 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 1.4e-144 516.9 394 64.5
Gorai.002G090100 Gossypium raimondii HOM05D007013 ORTHO05D008999 2.0e-143 513.1 391 65.2
Gohir.D01G068100 Gossypium hirsutum HOM05D007013 ORTHO05D008999 4.8e-142 508.4 391 64.7
Lj6g0002864 Lotus japonicus HOM05D007013 ORTHO05D008999 2.6e-140 502.7 400 63.0
Medtr3g052590 Medicago truncatula HOM05D007013 ORTHO05D008999 2.9e-139 499.2 401 62.1
Eucgr.F03478 Eucalyptus grandis HOM05D007013 ORTHO05D008999 5.0e-139 498.4 405 63.5
TPR.G33766 Trifolium pratense HOM05D007013 ORTHO05D008999 7.2e-138 494.6 401 62.8
PSO541G1885 Papaver somniferum HOM05D007013 ORTHO05D008999 1.2e-137 493.8 398 61.1
Hma1.2p1_0036F.1_g023520 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 2.1e-137 493.0 398 63.8
Glyma.08G318300 Glycine max HOM05D007013 ORTHO05D008999 6.1e-137 491.5 393 62.8
MELO3C013155.2 Cucumis melo HOM05D007013 ORTHO05D008999 1.8e-136 490.0 394 62.4
CsaV3_7G021910 Cucumis sativus L. HOM05D007013 ORTHO05D008999 3.0e-136 489.2 394 62.2
PSO675G8214 Papaver somniferum HOM05D007013 ORTHO05D008999 3.0e-136 489.2 400 61.0
arahy.Tifrunner.gnm1.ann1.YL2AFE Arachis hypogaea HOM05D007013 ORTHO05D008999 3.3e-135 485.7 405 60.5
vmacro02226 Vaccinium macrocarpon HOM05D007013 ORTHO05D008999 3.3e-135 485.7 395 61.8
Cpa.g.sc12.289 Carica papaya HOM05D007013 ORTHO05D008999 5.7e-135 485.0 394 63.5
VMungo0540G0725 Vigna mungo HOM05D007013 ORTHO05D008999 5.7e-135 485.0 392 63.0
Lalb_Chr18g0049881 Lupinus albus HOM05D007013 ORTHO05D008999 7.4e-135 484.6 393 62.1
THA.LOC104825406 Tarenaya hassleriana HOM05D007013 ORTHO05D008999 1.7e-134 483.4 393 62.3
FAN16G1225 Fragaria x ananassa HOM05D007013 ORTHO05D008999 1.8e-133 479.9 390 62.8
Actinidia05088 Actinidia chinensis HOM05D007013 ORTHO05D008999 4.1e-133 478.8 397 62.5
Psat5g177160 Pisum sativum HOM05D007013 ORTHO05D008999 4.1e-133 478.8 393 61.1
CSS0027260 Camellia sinensis var. sinensis HOM05D007013 ORTHO05D008999 7.0e-133 478.0 401 61.1
COL.COLO4_09677 Corchorus olitorius HOM05D007013 ORTHO05D008999 1.3e-131 473.8 391 61.9
ClCG09G010880 Citrullus lanatus HOM05D007013 ORTHO05D008999 1.7e-131 473.4 394 60.7
Sabra16G0284300 Salix brachista HOM05D007013 ORTHO05D008999 1.7e-131 473.4 397 60.2
EL10Ac4g07781 Beta vulgaris HOM05D007013 ORTHO05D008999 5.0e-131 471.9 389 59.1
Manes.15G070387 Manihot esculenta HOM05D007013 ORTHO05D008999 1.4e-128 463.8 315 72.4
Oeu034036.2 Olea europaea HOM05D007013 ORTHO05D008999 1.8e-128 463.4 393 58.5
Nn1g07163 Nelumbo nucifera HOM05D007013 ORTHO05D008999 8.8e-128 461.1 363 64.5
Thhalv10020871m.g Eutrema salsugineum HOM05D007013 ORTHO05D008999 1.2e-127 460.7 392 60.7
AL3G34260 Arabidopsis lyrata HOM05D007013 ORTHO05D008999 1.5e-127 460.3 392 61.7
Hund01977 Selenicereus undatus HOM05D007013 ORTHO05D008999 1.5e-127 460.3 389 58.1
HanXRQChr03g0076401 Helianthus annuus HOM05D007013 ORTHO05D008999 3.4e-127 459.1 389 59.4
BraA02t07867Z Brassica rapa HOM05D007013 ORTHO05D008999 5.7e-127 458.4 399 59.4
BcaB07g30535 Brassica carinata HOM05D007013 ORTHO05D008999 7.5e-127 458.0 398 59.5
Sc16g0005930 Simmondsia chinensis HOM05D007013 ORTHO05D008999 7.5e-127 458.0 391 57.3
Aqoxy1G02096 Aquilegia oxysepala HOM05D007013 ORTHO05D008999 9.7e-127 457.6 393 59.5
Cc05_g13940 Coffea canephora HOM05D007013 ORTHO05D008999 2.8e-126 456.1 393 58.3
Carub.0003s2044 Capsella rubella HOM05D007013 ORTHO05D008999 3.7e-126 455.7 399 60.2
Ca_14746_v3 Cicer arietinum L. HOM05D007013 ORTHO05D008999 7.0e-125 451.4 335 64.8
C02p44890 Brassica napus HOM05D007013 ORTHO05D008999 1.6e-124 450.3 399 58.9
CAN.G337.80 Capsicum annuum HOM05D007013 ORTHO05D008999 1.6e-124 450.3 396 58.3
BolC2t10525H Brassica oleracea HOM05D007013 ORTHO05D008999 2.7e-124 449.5 399 58.4
Nitab4.5_0002287g0070 Nicotiana tabacum HOM05D007013 ORTHO05D008999 2.2e-123 446.4 398 57.8
Aa31LG8G7290 Aethionema arabicum HOM05D007013 ORTHO05D008999 2.9e-123 446.0 399 58.1
Nitab4.5_0005590g0010 Nicotiana tabacum HOM05D007013 ORTHO05D008999 6.5e-123 444.9 399 57.9
Prupe.4G215900 Prunus persica HOM05D007013 ORTHO05D008999 6.5e-123 444.9 396 59.1
A02p28310 Brassica napus HOM05D007013 ORTHO05D008999 1.1e-122 444.1 367 62.4
ECA240G2937 Erigeron canadensis HOM05D007013 ORTHO05D008999 3.2e-122 442.6 388 58.5
Migut.H01815 Erythranthe guttata HOM05D007013 ORTHO05D008999 9.4e-122 441.0 394 56.9
Sp2g09120 Schrenkiella parvula HOM05D007013 ORTHO05D008999 1.6e-121 440.3 393 59.0
MSTRG.14440 Avicennia marina HOM05D007013 ORTHO05D008999 8.0e-121 438.0 390 56.2
AUR62020414 Chenopodium quinoa HOM05D007013 ORTHO05D008999 2.3e-120 436.4 355 59.2
Peaxi162Scf00235g00319 Petunia axillaris HOM05D007013 ORTHO05D008999 5.2e-120 435.3 407 56.0
Sed0023076 Sechium edule HOM05D007013 ORTHO05D008999 1.2e-119 434.1 344 62.8
Solyc07g064710.3 Solanum lycopersicum HOM05D007013 ORTHO05D008999 2.8e-118 429.5 403 55.8
DCAR_012723 Daucus carota HOM05D007013 ORTHO05D008999 3.7e-118 429.1 396 56.1
Ah.06g182900 Amaranthus hybridus HOM05D007013 ORTHO05D008999 6.3e-118 428.3 385 55.1
FAN11G2199 Fragaria x ananassa HOM05D007013 ORTHO05D008999 2.8e-113 412.9 386 56.0
BcaC03g16648 Brassica carinata HOM05D007013 ORTHO05D008999 8.0e-113 411.4 345 61.7
arahy.Tifrunner.gnm1.ann1.PYQ1JD Arachis hypogaea HOM05D007013 ORTHO05D008999 2.0e-111 406.8 320 62.2
Hma1.2p1_0036F.1_g023530 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 7.5e-111 404.8 320 66.9
unitig_578.g16279 Utricularia gibba HOM05D001434 ORTHO05D008999 4.9e-110 402.1 383 55.6
HPP92_012407 Vanilla planifolia HOM05D007013 ORTHO05D008999 8.3e-110 401.4 394 52.3
Lsat_1_v5_gn_9_93121 Lactuca sativa HOM05D007013 ORTHO05D008999 3.5e-108 396.0 389 54.8
Sopen07g032910 Solanum pennellii HOM05D007013 ORTHO05D008999 5.0e-107 392.1 356 57.6
Dinv22254 Davidia involucrata HOM05D007013 ORTHO05D008999 3.5e-100 369.4 266 68.0
SGA_v2.0_scaffold363G49936 Striga asiatica HOM05D007013 ORTHO05D008999 5.6e-98 362.1 420 46.9
Phvul.006G045700 Phaseolus vulgaris HOM05D007013 ORTHO05D008999 3.6e-97 359.4 297 62.0
ATR0794G085 Amborella trichopoda HOM05D007013 ORTHO05D008999 5.2e-96 355.5 315 58.7
AT3G20480 Arabidopsis thaliana HOM05D007013 ORTHO05D008999 4.6e-92 342.4 292 59.9
AUR62015801 Chenopodium quinoa HOM05D007013 ORTHO05D008999 1.3e-91 340.9 290 56.9
Lj1A874G27 Lonicera japonica HOM05D007013 ORTHO05D008999 1.4e-88 330.9 292 57.9
Gohir.A01G080900 Gossypium hirsutum HOM05D007013 ORTHO05D008999 1.3e-86 324.3 237 67.5
PGSC0003DMG400022313 Solanum tuberosum HOM05D007013 ORTHO05D008999 7.3e-82 308.5 285 54.0
Mapoly0002s0307 Marchantia polymorpha HOM05D007013 ORTHO05D008999 2.1e-81 307.0 390 45.1
Rhsim06G0218600 Rhododendron simsii HOM05D007013 ORTHO05D008999 1.3e-78 297.7 268 56.7
SMO367G1261 Selaginella moellendorffii HOM05D007013 ORTHO05D008999 7.3e-74 282.0 374 42.0
CARHR096240 Cardamine hirsuta HOM05D007013 ORTHO05D008999 1.4e-61 241.1 215 56.3
SEGI_14581 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 1.4e-61 241.1 239 54.8
Glyma.18G095300 Glycine max HOM05D007013 ORTHO05D008999 1.9e-58 230.7 217 56.7
Zm00001eb030850 Zea mays HOM05D007013 ORTHO05D008999 2.9e-54 216.9 231 53.7
Glyma.18G095150 Glycine max HOM05D007013 ORTHO05D008999 1.4e-53 214.5 285 43.5
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.5e-47 193.0 309 38.8
Pp3c19_1630 Physcomitrium patens HOM05D007013 ORTHO05D008999 2.2e-46 190.7 400 34.0
CBR_g39764 Chara braunii HOM05D007013 ORTHO05D008999 2.8e-41 173.7 345 33.6
Os07g0102000 Oryza sativa ssp. japonica HOM05D007013 ORTHO05D008999 2.4e-40 170.6 200 45.0
CDE05G3055 Ceratophyllum demersum HOM05D007013 ORTHO05D008999 1.1e-32 145.2 236 39.0
FAN16G0901 Fragaria x ananassa HOM05D007013 ORTHO05D008999 4.5e-31 139.8 99 72.7
TWI34G0353 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 3.7e-25 120.2 133 47.4
RcHm_v2.0_Chr4g0424981 Rosa chinensis HOM05D007013 ORTHO05D008999 4.8e-25 119.8 92 58.7
Medtr0152s0030 Medicago truncatula HOM05D007013 ORTHO05D008999 5.0e-14 83.2 101 45.5
Rhsim06G0218700 Rhododendron simsii HOM05D007013 ORTHO05D008999 2.3e-11 74.3 101 41.6
SEGI_13858 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 2.3e-11 74.3 75 44.0
Zm00001eb030810 Zea mays HOM05D007013 ORTHO05D008999 6.8e-11 72.8 94 40.4
Medtr0152s0050 Medicago truncatula HOM05D007013 ORTHO05D008999 8.3e-09 65.9 70 48.6
MELO3C029988.2 Cucumis melo HOM05D007013 ORTHO05D029173 7.7e-07 59.3 58 55.2
MELO3C025412.2 Cucumis melo HOM05D007013 ORTHO05D029173 1.7e-06 58.2 57 54.4
MELO3C022571.2 Cucumis melo HOM05D016993 ORTHO05D019020 6.5e-06 56.2 58 53.4


User provided reference genes

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