Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 0.0e+00 1168.7 590 100.0
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 6.1e-311 1070.1 590 93.1
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 6.8e-310 1066.6 595 90.8
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 3.2e-307 1057.7 591 89.8
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 1.4e-294 1015.8 591 87.5
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 3.1e-294 1014.6 591 87.3
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 6.6e-289 996.9 588 85.9
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 4.3e-288 994.2 593 84.5
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 9.6e-288 993.0 592 85.1
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 6.2e-287 990.3 594 85.0
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 1.8e-286 988.8 597 84.4
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 5.2e-286 987.3 594 84.2
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 8.9e-286 986.5 601 84.2
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.5e-285 985.7 594 84.7
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 2.6e-285 984.9 592 85.0
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 4.4e-285 984.2 603 83.6
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 5.8e-285 983.8 592 84.3
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 1.3e-284 982.6 592 84.0
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 3.8e-284 981.1 597 84.3
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 7.1e-283 976.9 577 83.9
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 3.5e-282 974.5 593 83.0
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 4.6e-282 974.2 594 83.3
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 5.1e-281 970.7 585 83.8
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 1.5e-280 969.1 599 82.8
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 2.5e-280 968.4 591 83.2
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 2.5e-280 968.4 564 84.6
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 7.3e-280 966.8 585 83.2
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 1.3e-279 966.1 575 83.7
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 1.6e-279 965.7 592 83.6
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 2.8e-279 964.9 547 87.6
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 4.8e-279 964.1 570 83.5
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 8.1e-279 963.4 591 81.7
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 4.0e-278 961.1 594 82.7
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 4.0e-278 961.1 594 82.5
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 9.0e-278 959.9 594 82.7
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 1.5e-277 959.1 616 80.7
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 2.0e-277 958.7 592 81.8
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 4.4e-277 957.6 594 82.2
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 4.4e-277 957.6 585 83.1
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 7.6e-277 956.8 590 82.2
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 9.9e-277 956.4 595 81.8
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 9.9e-277 956.4 590 81.4
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 1.3e-276 956.1 593 81.5
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 1.7e-276 955.7 590 80.8
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 1.7e-276 955.7 592 82.3
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 2.2e-276 955.3 591 80.9
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.9e-276 954.9 600 82.0
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 1.9e-275 952.2 576 83.5
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 1.9e-275 952.2 595 81.5
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 2.4e-275 951.8 617 79.4
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 2.4e-275 951.8 578 82.5
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 3.2e-275 951.4 595 81.3
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 4.2e-275 951.0 569 83.5
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 9.3e-275 949.9 590 80.8
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 2.1e-274 948.7 591 81.0
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 2.7e-274 948.3 549 85.1
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 2.7e-274 948.3 557 84.4
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 2.7e-274 948.3 595 81.2
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.5e-274 948.0 602 81.6
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 3.5e-274 948.0 585 81.2
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 4.6e-274 947.6 614 80.0
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 4.6e-274 947.6 601 81.4
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 1.0e-273 946.4 594 80.1
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 1.0e-273 946.4 588 81.8
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 1.3e-273 946.0 593 80.6
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 6.6e-273 943.7 590 80.0
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 6.6e-273 943.7 588 81.0
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 1.1e-272 943.0 593 82.0
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 1.5e-272 942.6 591 80.2
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 4.3e-272 941.0 610 80.3
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 7.4e-272 940.3 591 80.7
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.1e-270 936.4 592 79.6
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 3.1e-270 934.9 590 79.7
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 1.5e-269 932.6 574 82.9
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 1.7e-268 929.1 592 79.4
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 2.2e-268 928.7 590 79.2
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 4.9e-268 927.5 582 80.4
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 3.2e-267 924.9 595 78.8
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 3.2e-267 924.9 579 80.0
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 2.1e-266 922.2 593 79.6
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 4.6e-266 921.0 596 78.7
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 3.3e-264 914.8 587 78.7
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 5.3e-262 907.5 630 76.2
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 3.4e-261 904.8 598 77.4
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 2.5e-259 898.7 623 75.6
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 6.0e-258 894.0 590 79.3
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 4.3e-256 887.9 590 78.8
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 9.6e-256 886.7 592 78.2
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 5.3e-254 880.9 612 74.8
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 6.9e-254 880.6 593 74.5
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 2.9e-252 875.2 658 71.3
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 2.5e-251 872.1 587 74.8
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 5.5e-251 870.9 520 85.2
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 2.7e-250 868.6 579 78.1
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 2.3e-249 865.5 636 73.1
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 3.9e-249 864.8 579 77.5
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 5.1e-249 864.4 479 88.7
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 8.2e-247 857.1 552 75.9
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.2e-245 853.2 609 74.7
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 3.8e-244 848.2 588 75.5
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 8.5e-244 847.0 576 75.5
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 4.8e-231 804.7 591 72.1
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 6.3e-231 804.3 602 68.4
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 2.0e-229 799.3 547 71.8
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 3.5e-229 798.5 463 84.2
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 5.5e-227 791.2 485 82.9
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 2.3e-225 785.8 541 71.7
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 1.5e-224 783.1 546 70.5
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 1.2e-221 773.5 533 71.9
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 2.2e-215 752.7 513 74.7
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 4.2e-211 738.4 587 67.1
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 3.1e-193 679.1 524 68.9
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 4.9e-191 671.8 405 82.7
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 2.0e-189 666.4 530 63.0
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 2.0e-168 596.7 341 86.8
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 1.9e-166 590.1 410 74.4
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 1.9e-163 580.1 554 58.3
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 9.6e-163 577.8 510 59.2
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 1.3e-159 567.4 356 80.1
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.8e-156 557.0 544 52.6
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 2.5e-134 483.4 257 91.8
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 6.3e-130 468.8 600 46.2
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 2.6e-99 367.1 250 75.6
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 6.3e-90 335.9 253 68.8
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 1.4e-73 281.6 415 46.0
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 5.8e-67 259.6 208 63.9
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.7e-58 231.5 198 59.1
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 4.3e-46 190.3 153 66.0
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 9.6e-46 189.1 160 70.6
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.6e-45 188.3 116 82.8
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 4.6e-40 170.2 102 81.4
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 8.4e-34 149.4 118 61.9
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 8.7e-31 139.4 314 32.5
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 4.9e-26 123.6 312 32.7
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 6.5e-26 123.2 76 85.5
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 1.1e-20 105.9 57 86.0
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 1.3e-18 99.0 59 83.1
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 3.9e-15 87.4 148 41.2
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 9.7e-14 82.8 85 58.8
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 1.3e-13 82.4 42 85.7
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 4.8e-13 80.5 126 42.9
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 4.8e-13 80.5 45 77.8
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 1.8e-12 78.6 107 46.7
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 2.9e-10 71.2 42 78.6
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 7.2e-09 66.6 70 58.6
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 4.7e-08 63.9 35 80.0
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 6.1e-08 63.5 37 83.8
Lsat_1_v5_gn_5_36061 Lactuca sativa HOM05D004902 ORTHO05D025756 2.6e-06 58.2 44 61.4
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 4.4e-06 57.4 112 38.4


User provided reference genes

Program Settings