Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 1.3e-31 139.0 67 100.0
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 2.4e-30 134.8 67 97.0
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 9.6e-27 122.9 67 88.1
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 1.3e-26 122.5 65 86.2
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 1.6e-26 122.1 67 88.1
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 3.1e-25 117.9 66 83.3
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 3.1e-25 117.9 65 84.6
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 5.3e-25 117.1 66 83.3
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 1.5e-24 115.5 64 82.8
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 2.6e-24 114.8 66 77.3
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 2.6e-24 114.8 65 83.1
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 3.4e-24 114.4 66 78.8
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 3.4e-24 114.4 66 78.8
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 7.6e-24 113.2 58 89.7
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 7.6e-24 113.2 58 89.7
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 7.6e-24 113.2 58 89.7
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 9.9e-24 112.8 69 78.3
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 9.9e-24 112.8 65 80.0
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 9.9e-24 112.8 65 80.0
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 9.9e-24 112.8 65 80.0
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 9.9e-24 112.8 59 84.7
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 9.9e-24 112.8 64 81.2
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.3e-23 112.5 65 80.0
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 1.3e-23 112.5 66 83.3
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 1.3e-23 112.5 66 84.8
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 1.3e-23 112.5 60 86.7
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 1.7e-23 112.1 65 80.0
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 1.7e-23 112.1 66 83.3
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 1.7e-23 112.1 66 83.3
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 1.7e-23 112.1 65 84.6
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 2.2e-23 111.7 64 79.7
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 2.2e-23 111.7 64 79.7
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 2.2e-23 111.7 64 79.7
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 2.2e-23 111.7 64 79.7
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 2.2e-23 111.7 64 79.7
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 2.2e-23 111.7 64 79.7
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 2.2e-23 111.7 64 79.7
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 2.2e-23 111.7 64 79.7
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.2e-23 111.7 59 83.1
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.2e-23 111.7 59 83.1
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.2e-23 111.7 59 83.1
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.2e-23 111.7 59 83.1
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.2e-23 111.7 59 83.1
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.2e-23 111.7 59 83.1
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 2.2e-23 111.7 68 82.4
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 2.2e-23 111.7 64 85.9
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 2.2e-23 111.7 59 83.1
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 2.2e-23 111.7 66 81.8
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 2.9e-23 111.3 58 86.2
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 2.9e-23 111.3 58 91.4
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 2.9e-23 111.3 64 85.9
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 2.9e-23 111.3 65 80.0
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 2.9e-23 111.3 64 85.9
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 3.8e-23 110.9 66 75.8
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 3.8e-23 110.9 58 87.9
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 4.9e-23 110.5 64 79.7
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 4.9e-23 110.5 64 79.7
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 4.9e-23 110.5 67 77.6
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 4.9e-23 110.5 66 80.3
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 4.9e-23 110.5 59 83.1
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 6.4e-23 110.2 58 87.9
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 6.4e-23 110.2 65 81.5
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 6.4e-23 110.2 64 81.2
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 6.4e-23 110.2 64 84.4
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 8.4e-23 109.8 58 84.5
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 8.4e-23 109.8 66 81.8
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 1.4e-22 109.0 64 82.8
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 1.4e-22 109.0 64 82.8
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 1.4e-22 109.0 64 82.8
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 1.4e-22 109.0 64 79.7
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 3.2e-22 107.8 64 81.2
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 3.2e-22 107.8 66 77.3
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 4.2e-22 107.5 59 81.4
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 4.2e-22 107.5 65 75.4
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 4.2e-22 107.5 65 75.4
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 4.2e-22 107.5 64 82.8
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 4.2e-22 107.5 64 78.1
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 4.2e-22 107.5 64 78.1
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 5.4e-22 107.1 65 76.9
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 7.1e-22 106.7 65 78.5
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 9.3e-22 106.3 64 76.6
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 9.3e-22 106.3 65 75.4
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 1.6e-21 105.5 64 76.6
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 2.1e-21 105.1 65 72.3
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 3.5e-21 104.4 59 83.1
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 3.5e-21 104.4 59 83.1
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 1.0e-20 102.8 66 74.2
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 1.0e-20 102.8 64 73.4
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 1.0e-20 102.8 65 73.8
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 1.0e-20 102.8 66 75.8
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 1.0e-20 102.8 66 75.8
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 1.3e-20 102.4 58 82.8
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 1.3e-20 102.4 58 81.0
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 3.9e-20 100.9 58 77.6
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 3.9e-20 100.9 58 82.8
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 5.1e-20 100.5 66 68.2
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 8.7e-20 99.8 58 75.9
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 1.1e-19 99.4 64 78.1
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 2.5e-19 98.2 70 68.6
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 3.3e-19 97.8 70 68.6
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 3.3e-19 97.8 70 68.6
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 3.3e-19 97.8 58 75.9
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 9.6e-19 96.3 59 72.9
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 1.6e-18 95.5 50 88.0
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 2.1e-18 95.1 66 68.2
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 8.1e-18 93.2 50 84.0
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 4.0e-17 90.9 56 76.8
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 1.5e-16 89.0 56 75.0
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 1.5e-16 89.0 57 68.4
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 3.4e-16 87.8 51 78.4
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 2.4e-09 65.1 46 71.7
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 9.0e-09 63.2 59 50.8
MD11G1211600 Malus domestica HOM05D007124 ORTHO05D008980 4.9e-07 57.4 38 65.8
AagrBONN_evm.TU.Sc2ySwM_362.2137 Anthoceros agrestis HOM05D006672 ORTHO05D007769 2.5e-06 55.1 60 45.0


User provided reference genes

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