Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 6.2e-304 1046.6 502 100.0
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 6.0e-291 1003.4 502 95.6
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 7.2e-236 820.5 511 78.9
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 3.6e-227 791.6 517 76.2
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 4.9e-224 781.2 517 75.0
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 5.2e-218 761.1 516 73.6
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 4.4e-217 758.1 508 73.6
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 9.8e-217 756.9 509 73.1
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.3e-216 756.5 508 73.4
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 1.3e-216 756.5 510 74.1
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.2e-216 755.7 508 73.4
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.9e-214 747.7 517 72.0
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 3.6e-211 738.4 516 70.7
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 4.7e-211 738.0 518 70.3
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.8e-210 736.1 511 71.6
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 2.3e-210 735.7 525 69.7
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 3.1e-210 735.3 509 72.3
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 1.5e-209 733.0 510 70.6
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 7.5e-209 730.7 522 69.7
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.4e-208 727.6 505 72.1
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.4e-208 727.6 505 72.1
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 8.3e-208 727.2 510 71.2
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 1.4e-207 726.5 514 70.2
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.9e-207 726.1 510 71.0
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 4.1e-207 724.9 517 69.1
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 7.0e-207 724.2 530 70.0
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 7.0e-207 724.2 509 70.5
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 9.2e-207 723.8 513 70.8
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 6.0e-206 721.1 520 70.4
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 7.8e-206 720.7 516 70.2
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-205 719.9 505 71.7
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-205 719.9 505 71.7
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.3e-205 719.9 508 70.3
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.7e-205 719.5 519 69.9
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 6.6e-205 717.6 510 69.4
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.1e-204 716.8 510 69.6
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.1e-204 716.8 514 68.3
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 1.5e-204 716.5 509 68.6
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.9e-204 716.1 508 69.9
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.4e-202 709.9 507 69.6
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 1.4e-202 709.9 507 68.2
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 4.0e-202 708.4 524 67.6
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 5.2e-202 708.0 510 71.6
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 6.8e-202 707.6 541 66.9
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 8.9e-202 707.2 511 68.9
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 1.2e-201 706.8 510 68.6
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 7.5e-201 704.1 526 66.7
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.9e-200 702.2 513 67.1
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 3.7e-200 701.8 534 66.1
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 4.9e-200 701.4 524 67.6
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.1e-199 700.3 535 66.5
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 2.4e-199 699.1 511 67.5
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 4.1e-199 698.4 504 69.6
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 7.1e-199 697.6 520 65.8
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 7.1e-199 697.6 526 66.5
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.2e-198 696.8 533 65.9
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.2e-198 696.8 533 65.9
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.6e-198 696.4 503 69.2
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 2.3e-197 692.6 540 65.4
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 2.3e-197 692.6 540 65.4
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 3.0e-197 692.2 526 66.0
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 5.1e-197 691.4 521 67.4
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 1.5e-196 689.9 532 65.4
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 1.2e-195 686.8 513 66.5
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 3.6e-195 685.3 523 65.6
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-194 683.7 509 67.8
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.4e-194 683.3 517 65.4
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.8e-194 682.9 509 67.8
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 1.2e-193 680.2 514 66.3
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 4.4e-193 678.3 473 71.0
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 5.8e-193 677.9 504 64.9
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 1.3e-192 676.8 531 65.5
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 2.9e-192 675.6 510 67.1
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.9e-192 675.6 508 67.3
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 3.8e-192 675.2 532 63.9
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 4.6e-190 668.3 507 64.9
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.0e-189 667.2 531 63.3
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.3e-189 666.8 523 63.5
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 6.6e-189 664.5 503 65.0
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 4.3e-188 661.8 532 63.2
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 4.3e-188 661.8 534 64.0
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 5.6e-188 661.4 524 64.5
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.2e-187 660.2 532 63.2
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 4.7e-187 658.3 535 63.6
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 4.7e-187 658.3 544 62.3
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 6.9e-186 654.4 539 62.9
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 3.4e-185 652.1 523 62.7
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.7e-184 649.8 541 62.1
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.9e-183 646.4 525 61.7
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 9.3e-183 644.0 523 62.5
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.2e-182 643.7 509 62.3
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 7.8e-182 641.0 523 61.8
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 3.0e-181 639.0 522 62.3
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 4.8e-179 631.7 532 61.1
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 1.8e-178 629.8 393 76.8
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 5.3e-178 628.2 517 62.5
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 6.9e-178 627.9 514 61.9
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 9.9e-177 624.0 467 62.1
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.7e-176 623.2 530 60.6
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 3.8e-176 622.1 504 60.9
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 5.4e-175 618.2 514 63.0
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 7.1e-175 617.8 474 63.3
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.3e-173 613.6 509 61.1
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.8e-173 613.2 480 63.3
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 3.0e-173 612.5 452 66.2
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 5.1e-173 611.7 509 61.9
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 8.7e-173 610.9 412 70.4
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 2.9e-168 595.9 446 66.4
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 3.5e-166 589.0 468 63.5
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 2.1e-158 563.1 447 61.5
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 8.2e-155 551.2 311 83.0
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 1.5e-153 547.0 295 87.1
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 5.0e-152 542.0 383 68.7
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 1.9e-151 540.0 429 64.8
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.5e-148 530.4 468 58.3
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 2.4e-146 523.1 311 77.2
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 7.9e-142 508.1 303 79.2
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 3.6e-134 482.6 311 71.4
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 3.7e-123 446.0 383 60.3
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.8e-122 443.7 521 43.6
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.7e-121 439.9 288 70.1
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 6.1e-118 428.7 238 86.6
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 4.8e-115 419.1 239 82.0
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 4.8e-115 419.1 246 81.3
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 5.9e-113 412.1 500 43.4
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.5e-111 407.5 566 41.5
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 8.6e-96 355.1 524 45.2
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 1.6e-89 334.3 196 80.1
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 8.1e-86 322.0 319 53.6
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 4.4e-84 316.2 339 53.4
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 8.3e-83 312.0 274 60.6
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.4e-82 311.2 200 72.5
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 9.2e-74 282.0 166 80.7
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 3.0e-72 276.9 270 56.7
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 1.5e-60 238.0 217 58.5
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 1.3e-56 224.9 224 55.8
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 3.9e-56 223.4 224 55.4
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 2.4e-53 214.2 157 68.8
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 8.4e-51 205.7 129 71.3
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 8.4e-51 205.7 129 71.3
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-50 205.3 124 74.2
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-50 204.9 432 31.2
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 5.6e-47 193.0 189 49.2
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.4e-45 187.6 109 81.7
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 5.7e-39 166.4 106 68.9
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.8e-35 153.7 98 77.6
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 6.5e-35 152.9 210 42.9
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.4e-34 151.8 164 51.2
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 1.4e-34 151.8 164 49.4
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 4.2e-34 150.2 229 37.1
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 1.6e-33 148.3 261 38.3
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 2.2e-30 137.9 254 37.4
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 1.8e-29 134.8 266 37.2
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 5.3e-29 133.3 76 77.6
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 5.3e-29 133.3 76 77.6
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.7e-27 128.3 168 47.0
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.2e-27 127.9 103 64.1
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 2.5e-26 124.4 85 64.7
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 3.7e-22 110.5 90 63.3
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.5e-18 97.8 59 72.9
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 6.1e-17 93.2 72 65.3
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 2.0e-12 78.2 89 48.3
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 5.2e-08 63.5 35 88.6
Eucgr.F00781 Eucalyptus grandis HOM05D004336 ORTHO05D192954 2.0e-07 61.6 152 35.5


User provided reference genes

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