Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 1.6e-209 733.0 525 100.0
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 9.3e-202 707.2 525 95.4
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 1.9e-133 480.3 536 74.4
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 1.5e-122 444.1 493 76.7
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.6e-121 440.7 542 68.3
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 2.1e-121 440.3 500 73.8
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 6.0e-116 422.2 523 70.4
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 1.3e-115 421.0 527 69.8
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 3.9e-115 419.5 525 69.9
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 5.1e-115 419.1 500 72.0
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 1.5e-114 417.5 523 69.8
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.5e-114 417.5 523 69.8
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 6.2e-113 412.1 528 66.5
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 1.2e-111 407.9 527 68.7
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 3.2e-109 399.8 496 72.0
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 2.1e-108 397.1 486 73.0
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 4.6e-108 396.0 386 84.7
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 1.3e-107 394.4 481 71.9
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 2.3e-107 393.7 481 71.7
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 3.9e-107 392.9 531 67.6
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 5.1e-107 392.5 481 71.7
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 7.3e-106 388.7 531 69.9
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 9.6e-106 388.3 467 71.7
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 2.8e-105 386.7 473 71.9
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 1.4e-104 384.4 470 71.3
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 6.9e-104 382.1 473 72.3
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 1.2e-103 381.3 472 72.0
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 1.2e-103 381.3 473 72.3
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 1.5e-103 380.9 473 72.3
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 1.5e-103 380.9 481 71.1
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 1.5e-103 380.9 481 71.1
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 4.5e-103 379.4 500 70.2
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 8.4e-102 375.2 481 70.7
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 8.4e-102 375.2 476 69.7
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 1.4e-101 374.4 542 63.8
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 1.4e-101 374.4 493 69.2
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 5.4e-101 372.5 531 66.1
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 7.9e-100 368.6 475 60.4
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 1.0e-99 368.2 475 71.2
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 1.8e-99 367.5 530 66.0
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 9.6e-98 361.7 530 67.0
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 2.8e-97 360.1 478 69.7
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 6.2e-97 359.0 529 64.3
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 1.1e-96 358.2 523 63.7
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 9.0e-96 355.1 525 66.9
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 2.6e-95 353.6 525 65.7
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 3.4e-95 353.2 506 65.8
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 1.3e-94 351.3 478 66.9
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 2.9e-94 350.1 416 73.3
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 4.9e-94 349.4 523 66.7
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 1.1e-93 348.2 479 69.3
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 1.1e-93 348.2 473 67.9
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 1.9e-93 347.4 469 69.5
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 2.4e-93 347.1 480 70.4
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 5.5e-93 345.9 413 71.9
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 1.0e-91 341.7 465 68.6
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 1.8e-91 340.9 520 62.3
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 2.3e-91 340.5 482 67.8
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 5.6e-90 335.9 542 62.4
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 7.4e-90 335.5 463 68.0
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 7.4e-90 335.5 483 64.6
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 3.7e-89 333.2 520 61.5
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 8.1e-89 332.0 365 79.7
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 6.9e-88 328.9 494 61.5
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 1.2e-87 328.2 478 64.4
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 1.2e-87 328.2 479 65.1
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 4.9e-86 322.8 467 68.7
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 1.4e-85 321.2 491 60.7
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 9.3e-85 318.5 487 62.2
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 2.1e-84 317.4 485 63.7
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 2.1e-84 317.4 472 64.2
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 1.5e-82 311.2 476 65.5
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 9.6e-82 308.5 489 62.2
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 9.6e-82 308.5 453 62.5
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 1.6e-81 307.8 472 64.8
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 2.8e-81 307.0 482 62.7
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 3.7e-81 306.6 490 60.6
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 1.8e-80 304.3 519 60.7
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 1.8e-80 304.3 472 66.5
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 9.0e-80 302.0 413 68.8
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 9.0e-80 302.0 416 70.0
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 2.0e-79 300.8 482 62.2
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 2.0e-79 300.8 479 63.9
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 3.8e-78 296.6 533 57.2
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 1.6e-76 291.2 469 61.0
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 2.1e-76 290.8 483 60.5
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 8.7e-75 285.4 484 57.0
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 1.5e-74 284.6 483 62.3
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 6.3e-73 279.3 480 63.5
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 1.4e-72 278.1 488 59.2
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 4.5e-71 273.1 497 60.6
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 3.8e-70 270.0 292 86.3
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 4.6e-68 263.1 475 59.2
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 9.4e-61 238.8 276 54.7
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 9.4e-61 238.8 349 70.2
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.2e-60 238.4 464 57.1
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 2.0e-58 231.1 487 57.1
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 4.4e-58 229.9 375 63.2
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 1.7e-57 228.0 292 81.5
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 2.2e-49 201.1 299 58.9
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 3.1e-48 197.2 333 50.8
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 1.0e-46 192.2 292 74.7
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 8.8e-43 179.1 235 83.0
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 3.4e-42 177.2 482 52.3
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 5.7e-42 176.4 472 52.3
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 7.5e-42 176.0 470 31.5
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 9.8e-42 175.6 290 72.4
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 1.1e-40 172.2 119 87.4
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 9.5e-37 159.1 109 88.1
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 1.4e-32 145.2 137 56.9
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 2.3e-30 137.9 98 71.4
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.7e-22 111.7 290 32.4
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 5.6e-21 106.7 322 53.1
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 1.6e-20 105.1 316 55.4
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 1.5e-18 98.6 328 51.2
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 1.7e-17 95.1 314 51.0
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 1.1e-16 92.4 103 48.5
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 5.8e-10 70.1 118 48.3
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 1.3e-09 68.9 126 31.0
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 3.5e-07 60.8 92 30.4


User provided reference genes

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