Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 8.7e-170 600.9 488 100.0
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 4.7e-139 498.8 488 86.9
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 3.9e-93 346.3 487 66.5
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 8.1e-91 338.6 476 65.5
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 2.2e-88 330.5 474 64.8
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 6.4e-88 328.9 473 64.5
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 5.4e-87 325.9 485 66.8
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 2.1e-83 313.9 438 60.7
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 3.0e-77 293.5 488 53.5
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 5.1e-77 292.7 477 66.7
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 6.7e-77 292.4 485 59.2
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 8.1e-75 285.4 476 67.6
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 1.4e-74 284.6 478 61.7
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 1.8e-74 284.3 477 66.7
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 2.0e-73 280.8 440 52.7
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 9.9e-73 278.5 469 63.5
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 4.9e-72 276.2 440 49.3
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 6.4e-72 275.8 478 60.0
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 1.4e-71 274.6 440 49.5
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 2.7e-70 270.4 437 70.5
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 6.0e-70 269.2 478 59.2
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 3.9e-69 266.5 439 70.6
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 1.5e-68 264.6 450 60.0
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 2.0e-65 254.2 485 57.5
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 4.5e-65 253.1 474 52.7
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 1.3e-64 251.5 474 52.7
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 1.7e-64 251.1 474 53.2
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 2.9e-64 250.4 468 51.5
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 2.9e-64 250.4 474 52.5
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 6.5e-64 249.2 475 52.6
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 7.1e-63 245.7 473 50.1
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 6.0e-62 242.7 477 56.6
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 6.7e-61 239.2 451 43.9
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 8.7e-61 238.8 474 57.8
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 3.3e-60 236.9 492 55.7
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 1.6e-59 234.6 481 56.8
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 6.3e-59 232.6 450 49.8
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 1.1e-58 231.9 492 55.9
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 1.8e-58 231.1 450 57.3
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 2.4e-58 230.7 474 50.6
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 4.1e-58 229.9 493 56.4
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 5.3e-58 229.6 478 58.2
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 5.3e-58 229.6 472 45.8
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 2.6e-57 227.3 378 67.5
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 5.9e-57 226.1 479 57.0
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 7.6e-57 225.7 439 35.5
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 2.2e-56 224.2 479 57.0
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 1.2e-54 218.4 481 54.9
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 1.2e-54 218.4 457 46.0
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 2.7e-54 217.2 340 65.0
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 6.1e-54 216.1 340 65.6
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 1.3e-53 214.9 471 55.0
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 2.3e-53 214.2 478 55.2
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 3.9e-53 213.4 481 54.7
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 3.3e-52 210.3 476 55.7
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 4.3e-52 209.9 469 61.8
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 4.3e-52 209.9 475 52.4
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 4.3e-52 209.9 478 54.8
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 9.7e-52 208.8 475 52.6
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 9.7e-52 208.8 476 55.9
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 1.3e-51 208.4 476 55.9
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 6.3e-51 206.1 479 55.7
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 4.1e-50 203.4 338 58.3
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 4.1e-50 203.4 478 54.4
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 4.1e-50 203.4 478 54.4
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 4.5e-49 199.9 475 52.8
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 7.7e-49 199.1 438 56.6
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 1.6e-46 191.4 173 56.6
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 3.7e-43 180.3 211 51.7
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 4.1e-42 176.8 437 31.4
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 5.9e-41 172.9 173 52.0
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 3.8e-40 170.2 410 58.5
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 8.5e-40 169.1 438 51.8
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 9.4e-39 165.6 420 37.6
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 4.7e-38 163.3 475 48.6
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 2.0e-36 157.9 345 48.1
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 2.6e-36 157.5 435 54.7
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 1.8e-29 134.8 180 46.7
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 2.1e-22 111.3 146 43.2
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 6.1e-22 109.8 339 51.0
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 1.1e-18 99.0 75 65.3
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 1.7e-11 75.1 49 75.5


User provided reference genes

Program Settings