Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 6.3e-98 360.9 202 100.0
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.0e-63 247.3 181 72.9
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 3.3e-62 242.3 197 70.1
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 9.5e-62 240.7 206 62.1
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 5.2e-60 235.0 207 61.8
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 2.9e-58 229.2 209 62.2
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 3.2e-57 225.7 210 61.4
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.1e-56 223.0 197 65.0
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 6.0e-56 221.5 209 59.3
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 7.8e-56 221.1 208 60.1
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.0e-55 220.7 205 62.0
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 2.3e-55 219.5 205 60.5
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.1e-55 218.4 204 59.8
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 2.5e-54 216.1 211 56.4
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 3.3e-54 215.7 199 60.3
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 4.3e-54 215.3 131 87.0
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 9.5e-54 214.2 204 58.8
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 4.7e-53 211.8 207 58.5
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 8.1e-53 211.1 212 58.0
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.1e-52 210.7 207 58.0
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.2e-52 208.4 207 57.5
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.2e-51 207.2 207 57.0
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 2.6e-51 206.1 220 56.4
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 9.9e-51 204.1 214 56.5
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 1.3e-50 203.8 201 55.2
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.6e-48 195.3 218 55.0
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 6.0e-48 194.9 218 55.0
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.0e-48 194.9 218 55.0
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.0e-48 194.9 218 55.0
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 7.8e-48 194.5 218 55.5
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.7e-47 193.4 218 54.6
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 5.1e-47 191.8 202 55.9
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 6.6e-47 191.4 210 53.3
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 6.2e-45 184.9 191 57.6
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 1.4e-44 183.7 206 52.4
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 1.4e-44 183.7 208 53.8
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.8e-44 183.3 200 55.0
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.8e-44 183.3 200 55.0
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 3.1e-44 182.6 202 54.0
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.2e-44 181.8 200 55.0
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 6.8e-44 181.4 206 53.9
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 8.9e-44 181.0 205 52.7
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.2e-43 180.6 188 56.9
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.6e-43 179.5 207 51.7
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 5.8e-43 178.3 212 52.4
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.3e-42 177.2 184 54.9
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 1.7e-42 176.8 209 51.2
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 1.7e-42 176.8 211 50.2
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.7e-42 176.8 179 57.5
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.2e-42 176.4 197 50.8
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.9e-42 176.0 205 50.7
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 6.4e-42 174.9 201 51.2
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 1.1e-41 174.1 190 50.5
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.4e-41 173.7 203 49.3
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 5.4e-41 171.8 250 45.2
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 7.1e-41 171.4 204 49.0
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.2e-40 170.6 200 52.0
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 6.0e-40 168.3 205 50.2
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.0e-39 167.5 197 51.8
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.3e-39 167.2 190 51.6
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 1.3e-39 167.2 216 50.5
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 3.0e-39 166.0 231 47.2
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 3.0e-39 166.0 199 48.7
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 3.9e-39 165.6 183 53.6
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 3.9e-39 165.6 181 52.5
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 5.1e-39 165.2 205 49.8
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 8.7e-39 164.5 202 51.5
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 1.5e-38 163.7 197 51.8
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 2.5e-38 162.9 206 46.6
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 2.5e-38 162.9 206 51.5
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 3.3e-38 162.5 192 49.0
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.3e-38 162.2 201 49.3
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 5.6e-38 161.8 210 46.7
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 6.2e-37 158.3 216 46.8
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 8.1e-37 157.9 219 46.1
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 1.1e-36 157.5 205 45.9
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 2.4e-36 156.4 212 47.6
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 4.0e-36 155.6 182 50.0
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 2.0e-35 153.3 216 46.3
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 2.6e-35 152.9 209 46.4
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 5.8e-35 151.8 191 49.7
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 7.6e-35 151.4 215 46.0
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 7.6e-35 151.4 197 48.2
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 2.2e-34 149.8 206 46.1
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.9e-34 149.4 189 49.7
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 6.4e-34 148.3 172 50.6
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 6.4e-34 148.3 205 45.9
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 8.4e-34 147.9 203 47.8
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 2.4e-33 146.4 201 41.8
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 3.2e-33 146.0 205 45.9
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 4.2e-33 145.6 219 43.8
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.2e-32 144.1 218 45.4
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.6e-32 143.7 199 46.7
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 2.7e-32 142.9 211 44.5
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 4.6e-32 142.1 219 42.5
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 7.8e-32 141.4 202 44.1
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 1.0e-31 141.0 207 44.0
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.0e-31 141.0 187 46.5
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-31 140.6 193 47.2
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 1.3e-31 140.6 199 48.2
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 1.3e-31 140.6 219 44.7
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.7e-31 140.2 208 46.2
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 2.3e-31 139.8 213 48.4
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 3.9e-31 139.0 193 45.1
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.1e-31 138.7 187 45.5
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.1e-30 137.5 205 43.9
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 3.3e-30 136.0 191 47.1
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 4.3e-30 135.6 207 42.0
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 9.6e-30 134.4 194 42.8
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 1.6e-29 133.7 119 61.3
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 2.8e-29 132.9 188 44.7
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 3.6e-29 132.5 188 44.7
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 3.6e-29 132.5 206 42.2
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.1e-28 131.0 188 46.8
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.8e-28 130.2 194 46.4
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.4e-28 129.8 189 44.4
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 2.4e-28 129.8 185 43.8
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 3.1e-28 129.4 210 41.9
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 9.0e-28 127.9 184 44.0
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 2.0e-27 126.7 153 49.7
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.0e-27 126.7 157 47.1
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 5.8e-27 125.2 160 47.5
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 7.6e-27 124.8 212 42.0
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 7.6e-27 124.8 212 42.0
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 9.9e-27 124.4 213 41.8
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.3e-26 124.0 200 41.5
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.7e-26 123.6 199 41.2
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.9e-26 122.9 196 42.3
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.8e-26 122.5 185 43.2
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 3.8e-26 122.5 171 48.0
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 4.9e-26 122.1 183 43.7
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 6.4e-26 121.7 181 43.6
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 6.4e-26 121.7 190 43.2
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 6.4e-26 121.7 190 42.1
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 8.4e-26 121.3 181 43.6
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.4e-25 120.6 152 47.4
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.2e-25 119.4 200 44.0
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.2e-25 119.4 200 44.0
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 4.2e-25 119.0 198 46.0
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 7.1e-25 118.2 184 42.9
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 9.3e-25 117.9 191 42.4
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 2.1e-24 116.7 116 54.3
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.7e-24 116.3 196 41.8
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 6.0e-24 115.2 183 41.0
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 6.0e-24 115.2 182 42.3
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 1.3e-23 114.0 184 42.4
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.3e-23 114.0 190 39.5
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.3e-23 114.0 187 44.4
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 3.9e-23 112.5 174 43.7
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 3.9e-23 112.5 193 43.0
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 6.7e-23 111.7 173 42.2
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 8.7e-23 111.3 183 42.6
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 3.3e-22 109.4 177 42.9
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 7.4e-22 108.2 189 43.4
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-21 107.1 180 38.9
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.6e-21 107.1 139 47.5
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.1e-20 104.4 193 42.0
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 1.8e-20 103.6 131 47.3
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 3.1e-20 102.8 169 39.6
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 4.0e-20 102.4 201 38.3
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 6.9e-20 101.7 138 46.4
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 3.4e-19 99.4 168 35.7
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 5.8e-19 98.6 196 40.8
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.2e-18 96.7 173 42.2
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.2e-18 96.7 101 52.5
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.9e-18 96.3 126 50.8
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 3.8e-18 95.9 192 39.1
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 3.2e-17 92.8 191 38.2
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 6.0e-16 88.6 117 47.9
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.9e-15 85.9 276 30.8
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 2.5e-14 83.2 188 36.7
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 4.3e-14 82.4 198 35.9
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 5.7e-14 82.0 188 36.2
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 5.7e-14 82.0 188 36.7
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 5.7e-14 82.0 188 36.2
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 1.3e-13 80.9 188 35.6
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.1e-13 80.1 196 36.7
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.1e-13 80.1 129 42.6
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.8e-13 79.7 192 39.1
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 4.5e-11 72.4 136 41.9
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 9.3e-09 64.7 206 30.1
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.1e-08 63.5 114 39.5
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.0e-07 61.2 131 38.9
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.3e-07 60.8 61 50.8
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 1.8e-07 60.5 161 30.4


User provided reference genes

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