Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020173 Carpinus fangiana HOM05D003436 ORTHO05D003674 2.0e-37 158.7 87 100.0
Cfa020175 Carpinus fangiana HOM05D003436 ORTHO05D003674 2.3e-28 128.6 97 77.3
Haze_19983 Corylus avellana HOM05D003436 ORTHO05D003674 9.9e-16 86.7 91 61.5
Ca_08518_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 3.5e-13 78.2 93 50.5
Glyma.03G144400 Glycine max HOM05D003436 ORTHO05D003674 4.6e-13 77.8 92 51.1
Haze_19981 Corylus avellana HOM05D003436 ORTHO05D003674 7.8e-13 77.0 91 57.1
Phvul.001G142000 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 1.3e-12 76.3 95 48.4
THA.LOC104826769 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 1.7e-12 75.9 82 53.7
Phvul.001G143100 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 3.9e-12 74.7 95 47.4
ATR0605G384 Amborella trichopoda HOM05D003436 ORTHO05D003674 5.1e-12 74.3 86 55.8
Aa31sc24G30 Aethionema arabicum HOM05D003436 ORTHO05D003674 1.1e-11 73.2 79 51.9
Nitab4.5_0001538g0030 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.1e-11 73.2 80 53.8
QL07p023622 Quercus lobata HOM05D003436 ORTHO05D003674 1.1e-11 73.2 66 63.6
Glyma.19G147200 Glycine max HOM05D003436 ORTHO05D003674 1.9e-11 72.4 82 53.7
Medtr7g093170 Medicago truncatula HOM05D003436 ORTHO05D003674 1.9e-11 72.4 78 55.1
Lalb_Chr15g0078981 Lupinus albus HOM05D003436 ORTHO05D003674 2.5e-11 72.0 82 53.7
Psat3g068920 Pisum sativum HOM05D003436 ORTHO05D003674 2.5e-11 72.0 78 52.6
Thecc.05G170800 Theobroma cacao HOM05D003436 ORTHO05D003674 2.5e-11 72.0 73 57.5
Cfa020171 Carpinus fangiana HOM05D003436 ORTHO05D003674 3.3e-11 71.6 102 51.0
Nitab4.5_0000105g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.3e-11 71.6 80 52.5
BcaC06g32544 Brassica carinata HOM05D003436 ORTHO05D003674 4.3e-11 71.2 72 56.9
Lj1g0001300 Lotus japonicus HOM05D003436 ORTHO05D003674 4.3e-11 71.2 111 43.2
Ca_25707_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 9.6e-11 70.1 77 53.2
Migut.J01829 Erythranthe guttata HOM05D003436 ORTHO05D003674 9.6e-11 70.1 104 49.0
Medtr7g093140 Medicago truncatula HOM05D003436 ORTHO05D003674 9.6e-11 70.1 81 54.3
TPR.G27745 Trifolium pratense HOM05D003436 ORTHO05D003674 9.6e-11 70.1 70 58.6
Potri.016G046350 Populus trichocarpa HOM05D003436 ORTHO05D003674 1.3e-10 69.7 88 51.1
Dinv14293 Davidia involucrata HOM05D003436 ORTHO05D003674 1.6e-10 69.3 98 44.9
Peaxi162Scf00003g04347 Petunia axillaris HOM05D003436 ORTHO05D003674 1.6e-10 69.3 80 51.2
BcaB01g06002 Brassica carinata HOM05D003436 ORTHO05D003674 2.1e-10 68.9 72 52.8
CANSAT64G0020 Cannabis sativa HOM05D003436 ORTHO05D003674 2.1e-10 68.9 82 47.6
Medtr7g093160 Medicago truncatula HOM05D003436 ORTHO05D003674 2.1e-10 68.9 81 54.3
PSO339G4457 Papaver somniferum HOM05D003436 ORTHO05D003674 2.1e-10 68.9 103 44.7
Peaxi162Scf00003g04337 Petunia axillaris HOM05D003436 ORTHO05D003674 2.1e-10 68.9 72 55.6
A10p29610 Brassica napus HOM05D003436 ORTHO05D003674 2.8e-10 68.6 72 54.2
C09p69990 Brassica napus HOM05D003436 ORTHO05D003674 2.8e-10 68.6 72 54.2
BolC9t59741H Brassica oleracea HOM05D003436 ORTHO05D003674 2.8e-10 68.6 72 54.2
BraA10t45003Z Brassica rapa HOM05D003436 ORTHO05D003674 2.8e-10 68.6 72 54.2
Psat6g120960 Pisum sativum HOM05D003436 ORTHO05D003674 2.8e-10 68.6 81 53.1
Atru.chr8.1096 Acer truncatum HOM05D003436 ORTHO05D003674 3.6e-10 68.2 82 51.2
Dinv14294 Davidia involucrata HOM05D003436 ORTHO05D003674 3.6e-10 68.2 66 60.6
arahy.Tifrunner.gnm1.ann1.00VVAL Arachis hypogaea HOM05D003436 ORTHO05D003674 4.8e-10 67.8 78 52.6
Nitab4.5_0000105g0110 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.8e-10 67.8 95 45.3
COL.COLO4_33990 Corchorus olitorius HOM05D011887 ORTHO05D003674 6.2e-10 67.4 86 47.7
Nitab4.5_0002343g0050 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.2e-10 67.4 70 55.7
Nitab4.5_0008334g0040 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.2e-10 67.4 81 50.6
Psat0s797g0240 Pisum sativum HOM05D003436 ORTHO05D003674 6.2e-10 67.4 85 50.6
Sp6g36090 Schrenkiella parvula HOM05D003436 ORTHO05D003674 6.2e-10 67.4 86 45.3
TWI53G0478 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 6.2e-10 67.4 66 60.6
arahy.Tifrunner.gnm1.ann1.95S5ZX Arachis hypogaea HOM05D003436 ORTHO05D003674 8.1e-10 67.0 78 52.6
BcaC06g32392 Brassica carinata HOM05D003436 ORTHO05D003674 8.1e-10 67.0 72 52.8
C03p03320 Brassica napus HOM05D003436 ORTHO05D003674 8.1e-10 67.0 72 51.4
BolC3t12875H Brassica oleracea HOM05D003436 ORTHO05D003674 8.1e-10 67.0 72 51.4
PGSC0003DMG400011439 Solanum tuberosum HOM05D003436 ORTHO05D003674 8.1e-10 67.0 72 54.2
Actinidia22034 Actinidia chinensis HOM05D003436 ORTHO05D003674 1.1e-09 66.6 84 56.0
Ciclev10012978m.g Citrus clementina HOM05D003436 ORTHO05D003674 1.1e-09 66.6 72 56.9
HanXRQChr05g0132881 Helianthus annuus HOM05D003436 ORTHO05D003674 1.1e-09 66.6 101 47.5
Manes.08G044900 Manihot esculenta HOM05D003436 ORTHO05D003674 1.1e-09 66.6 88 51.1
Solyc10g078780.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 1.1e-09 66.6 72 52.8
Sopen10g029400 Solanum pennellii HOM05D003436 ORTHO05D003674 1.1e-09 66.6 72 52.8
MELO3C008930.2 Cucumis melo HOM05D003436 ORTHO05D003674 1.4e-09 66.2 78 50.0
Prupe.7G076400 Prunus persica HOM05D003436 ORTHO05D003674 1.4e-09 66.2 71 53.5
VMungo1383G0252 Vigna mungo HOM05D003436 ORTHO05D003674 1.4e-09 66.2 64 59.4
Aqoxy7G03903 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.8e-09 65.9 90 46.7
CAN.G1161.31 Capsicum annuum HOM05D003436 ORTHO05D003674 1.8e-09 65.9 95 43.2
Cpa.g.sc85.72 Carica papaya HOM05D003436 ORTHO05D003674 1.8e-09 65.9 73 53.4
Oeu033740.1 Olea europaea HOM05D003436 ORTHO05D003674 1.8e-09 65.9 102 43.1
A03p02880 Brassica napus HOM05D003436 ORTHO05D003674 2.4e-09 65.5 73 53.4
BraA03t09652Z Brassica rapa HOM05D003436 ORTHO05D003674 2.4e-09 65.5 73 53.4
Cc06_g15980 Coffea canephora HOM05D003436 ORTHO05D003674 2.4e-09 65.5 93 47.3
Nitab4.5_0008334g0020 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.1e-09 65.1 70 54.3
SGA_v2.0_scaffold105G30485 Striga asiatica HOM05D003436 ORTHO05D003674 4.0e-09 64.7 105 42.9
ClCG04G002110 Citrullus lanatus HOM05D003436 ORTHO05D003674 5.3e-09 64.3 86 45.3
CsaV3_4G030630 Cucumis sativus L. HOM05D003436 ORTHO05D003674 5.3e-09 64.3 74 51.4
Psat0s797g0160 Pisum sativum HOM05D003436 ORTHO05D003674 6.9e-09 63.9 85 47.1
C03p03280 Brassica napus HOM05D003436 ORTHO05D003674 9.0e-09 63.5 68 54.4
Thhalv10014897m.g Eutrema salsugineum HOM05D003436 ORTHO05D003674 9.0e-09 63.5 72 48.6
Medtr1g053970 Medicago truncatula HOM05D003436 ORTHO05D003674 9.0e-09 63.5 84 51.2
Rhsim03G0006400 Rhododendron simsii HOM05D003436 ORTHO05D003674 9.0e-09 63.5 73 47.9
MSTRG.19903 Avicennia marina HOM05D003436 ORTHO05D003674 1.2e-08 63.2 102 43.1
ECA236G0475 Erigeron canadensis HOM05D000402 ORTHO05D000263 1.2e-08 63.2 102 43.1
ECA236G0537 Erigeron canadensis HOM05D003436 ORTHO05D003674 1.2e-08 63.2 72 50.0
Eucgr.K01836 Eucalyptus grandis HOM05D003436 ORTHO05D003674 1.2e-08 63.2 83 49.4
Lj5g0013312 Lotus japonicus HOM05D003436 ORTHO05D003674 1.2e-08 63.2 78 48.7
Peaxi162Scf00258g00520 Petunia axillaris HOM05D003436 ORTHO05D003674 1.2e-08 63.2 70 51.4
TWI74G0976 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.2e-08 63.2 83 50.6
GSVIVG01033503001 Vitis vinifera HOM05D003436 ORTHO05D003674 1.2e-08 63.2 88 47.7
AT5G06760 Arabidopsis thaliana HOM05D003436 ORTHO05D003674 2.0e-08 62.4 86 44.2
CARHR206420 Cardamine hirsuta HOM05D003436 ORTHO05D003674 2.0e-08 62.4 86 45.3
unitig_899.g15079 Utricularia gibba HOM05D003436 ORTHO05D003674 2.0e-08 62.4 85 44.7
AL6G16870 Arabidopsis lyrata HOM05D003436 ORTHO05D003674 3.4e-08 61.6 86 44.2
Ca_05483_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 3.4e-08 61.6 64 59.4
Nitab4.5_0000324g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.4e-08 61.6 73 50.7
Sabra16G0050300 Salix brachista HOM05D003436 ORTHO05D003674 3.4e-08 61.6 68 54.4
Solyc10g078760.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 3.4e-08 61.6 80 47.5
Sopen10g029380 Solanum pennellii HOM05D003436 ORTHO05D003674 3.4e-08 61.6 80 47.5
PGSC0003DMG400011437 Solanum tuberosum HOM05D003436 ORTHO05D003674 3.4e-08 61.6 80 47.5
VMungo1383G0066 Vigna mungo HOM05D003436 ORTHO05D003674 3.4e-08 61.6 85 44.7
MBI04_g14513_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 4.4e-08 61.2 91 45.1
Nn7g36015 Nelumbo nucifera HOM05D003436 ORTHO05D003674 4.4e-08 61.2 85 45.9
MELO3C009631.2 Cucumis melo HOM05D003436 ORTHO05D003674 5.8e-08 60.8 71 53.5
Lsat_1_v5_gn_8_75321 Lactuca sativa HOM05D003436 ORTHO05D003674 5.8e-08 60.8 73 47.9
RcHm_v2.0_Chr3g0479771 Rosa chinensis HOM05D003436 ORTHO05D003674 5.8e-08 60.8 70 52.9
Carub.0006s0565 Capsella rubella HOM05D003436 ORTHO05D003674 7.6e-08 60.5 72 48.6
MD12G1057800 Malus domestica HOM05D003436 ORTHO05D003674 7.6e-08 60.5 84 46.4
Sed0015125 Sechium edule HOM05D003436 ORTHO05D003674 7.6e-08 60.5 86 45.3
CDE06G2670 Ceratophyllum demersum HOM05D003436 ORTHO05D003674 9.9e-08 60.1 75 50.7
FvH4_6g22410 Fragaria vesca HOM05D003436 ORTHO05D003674 9.9e-08 60.1 70 51.4
FAN14G5712 Fragaria x ananassa HOM05D003436 ORTHO05D003674 9.9e-08 60.1 70 51.4
vmacro07911 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 9.9e-08 60.1 67 55.2
Oeu034263.1 Olea europaea HOM05D008970 ORTHO05D003674 1.3e-07 59.7 74 45.9
Lalb_Chr04g0261031 Lupinus albus HOM05D003436 ORTHO05D003674 1.7e-07 59.3 77 44.2
MBI04_g39831_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 1.7e-07 59.3 91 44.0
Sc19g0007020 Simmondsia chinensis HOM05D003436 ORTHO05D003674 1.7e-07 59.3 68 52.9
unitig_736.g22300 Utricularia gibba HOM05D000267 ORTHO05D000298 1.7e-07 59.3 70 50.0
CsaV3_3G038880 Cucumis sativus L. HOM05D003436 ORTHO05D003674 2.2e-07 58.9 71 50.7
Nitab4.5_0000324g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.2e-07 58.9 69 52.2
Sed0019071 Sechium edule HOM05D003436 ORTHO05D003674 2.2e-07 58.9 72 50.0
AUR62012039 Chenopodium quinoa HOM05D003436 ORTHO05D003674 2.9e-07 58.5 81 46.9
AUR62015378 Chenopodium quinoa HOM05D003436 ORTHO05D003674 2.9e-07 58.5 77 48.1
Ah.08g210350 Amaranthus hybridus HOM05D003436 ORTHO05D003674 3.8e-07 58.2 99 41.4
SalBow1G8531 Salvia bowleyana HOM05D003436 ORTHO05D003674 3.8e-07 58.2 63 52.4
GSVIVG01033505001 Vitis vinifera HOM05D003436 ORTHO05D003674 3.8e-07 58.2 75 49.3
EL10Ac3g06923 Beta vulgaris HOM05D003436 ORTHO05D003674 4.9e-07 57.8 77 46.8
BcaB01g06022 Brassica carinata HOM05D003436 ORTHO05D003674 4.9e-07 57.8 72 48.6
TWI77G0090 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 4.9e-07 57.8 83 47.0
VMungo0720G0768 Vigna mungo HOM05D003436 ORTHO05D003674 4.9e-07 57.8 66 53.0
BcaB01g06026 Brassica carinata HOM05D003436 ORTHO05D003674 6.4e-07 57.4 68 50.0
PGSC0003DMG400011438 Solanum tuberosum HOM05D003436 ORTHO05D003674 6.4e-07 57.4 84 44.0
Aqoxy6G00181 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 8.4e-07 57.0 93 43.0
CAN.G1161.30 Capsicum annuum HOM05D003436 ORTHO05D003674 8.4e-07 57.0 70 50.0
Aqoxy2G03681 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.1e-06 56.6 60 55.0
Aqoxy7G02037 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.1e-06 56.6 60 55.0
CAN.G1161.29 Capsicum annuum HOM05D003436 ORTHO05D003674 1.1e-06 56.6 80 43.8
ClCG10G017480 Citrullus lanatus HOM05D003436 ORTHO05D003674 1.1e-06 56.6 72 47.2
Glyma.09G112100 Glycine max HOM05D003436 ORTHO05D003674 1.1e-06 56.6 66 53.0
SalBow4G2804 Salvia bowleyana HOM05D003436 ORTHO05D003674 1.1e-06 56.6 82 47.6
arahy.Tifrunner.gnm1.ann1.BAUA8N Arachis hypogaea HOM05D003436 ORTHO05D003674 1.4e-06 56.2 57 54.4
Gohir.A01G191700 Gossypium hirsutum HOM05D003436 ORTHO05D003674 1.4e-06 56.2 73 47.9
Gohir.D01G178300 Gossypium hirsutum HOM05D003436 ORTHO05D003674 1.4e-06 56.2 73 47.9
Gorai.002G224800 Gossypium raimondii HOM05D003436 ORTHO05D003674 1.4e-06 56.2 73 47.9
FAN02G3232 Fragaria x ananassa HOM05D003436 ORTHO05D003674 1.9e-06 55.8 85 44.7
Aqoxy3G02738 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 4.2e-06 54.7 56 57.1
Nitab4.5_0000105g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.2e-06 54.7 63 52.4


User provided reference genes

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