Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020165 Carpinus fangiana HOM05D007306 ORTHO05D009112 6.0e-71 270.8 141 100.0
QL07p023738 Quercus lobata HOM05D007306 ORTHO05D009112 7.1e-48 194.1 145 74.5
CiPaw.09G030300 Carya illinoinensis HOM05D007306 ORTHO05D009112 3.5e-47 191.8 144 76.4
CiPaw.10G026400 Carya illinoinensis HOM05D007306 ORTHO05D009112 4.8e-44 181.4 146 71.9
Thecc.05G171400 Theobroma cacao HOM05D007306 ORTHO05D009112 4.6e-39 164.9 147 63.3
Prupe.7G077000 Prunus persica HOM05D007306 ORTHO05D009112 7.9e-39 164.1 144 61.1
Dinv14300 Davidia involucrata HOM05D007306 ORTHO05D009112 6.3e-36 154.5 140 63.6
Atru.chr8.1112 Acer truncatum HOM05D007306 ORTHO05D009112 8.2e-36 154.1 147 59.2
TAR623G0307 Trochodendron aralioides HOM05D007306 ORTHO05D009112 2.4e-35 152.5 140 67.1
COL.COLO4_33982 Corchorus olitorius HOM05D007306 ORTHO05D009112 3.4e-34 148.7 152 61.2
PGR004G2053 Punica granatum HOM05D007306 ORTHO05D009112 1.0e-33 147.1 152 59.2
Duzib093G0428 Durio zibethinus HOM05D007306 ORTHO05D009112 2.9e-33 145.6 154 56.5
MD12G1057100 Malus domestica HOM05D007306 ORTHO05D009112 2.9e-33 145.6 146 60.3
MD14G1057700 Malus domestica HOM05D007306 ORTHO05D009112 8.5e-33 144.1 144 63.9
Hma1.2p1_0386F.1_g141880 Hydrangea macrophylla HOM05D007306 ORTHO05D009112 1.9e-32 142.9 141 58.9
Lj1g0014955 Lotus japonicus HOM05D007306 ORTHO05D009112 2.5e-32 142.5 135 63.7
CANSAT64G1677 Cannabis sativa HOM05D007306 ORTHO05D009112 9.3e-32 140.6 150 60.0
Nn2g15686 Nelumbo nucifera HOM05D007306 ORTHO05D009112 1.2e-31 140.2 142 61.3
Aqoxy1G00127 Aquilegia oxysepala HOM05D007306 ORTHO05D009112 2.7e-31 139.0 145 54.5
Peaxi162Scf00258g00720 Petunia axillaris HOM05D007306 ORTHO05D009112 2.7e-31 139.0 143 54.5
Cpa.g.sc85.66 Carica papaya HOM05D007306 ORTHO05D009112 4.6e-31 138.3 135 61.5
Potri.006G192500 Populus trichocarpa HOM05D007306 ORTHO05D009112 4.6e-31 138.3 147 56.5
Gohir.A01G191300 Gossypium hirsutum HOM05D007306 ORTHO05D009112 6.1e-31 137.9 158 56.3
Gorai.002G224300 Gossypium raimondii HOM05D007306 ORTHO05D009112 6.1e-31 137.9 146 58.9
FvH4_6g22320 Fragaria vesca HOM05D007306 ORTHO05D009112 7.9e-31 137.5 143 57.3
FAN05G3567 Fragaria x ananassa HOM05D007306 ORTHO05D009112 7.9e-31 137.5 143 57.3
RcHm_v2.0_Chr3g0479681 Rosa chinensis HOM05D007306 ORTHO05D009112 1.0e-30 137.1 138 58.7
FAN14G0362 Fragaria x ananassa HOM05D007306 ORTHO05D009112 2.3e-30 136.0 145 55.9
arahy.Tifrunner.gnm1.ann1.I9AM74 Arachis hypogaea HOM05D007306 ORTHO05D009112 3.0e-30 135.6 144 59.0
Gohir.D01G178600 Gossypium hirsutum HOM05D007306 ORTHO05D009112 3.9e-30 135.2 146 58.2
Potri.016G045700 Populus trichocarpa HOM05D007306 ORTHO05D009112 6.7e-30 134.4 150 54.0
Nitab4.5_0001137g0060 Nicotiana tabacum HOM05D007306 ORTHO05D009112 1.1e-29 133.7 143 54.5
arahy.Tifrunner.gnm1.ann1.T0JWFY Arachis hypogaea HOM05D007306 ORTHO05D009112 1.5e-29 133.3 144 59.0
Ciclev10013031m.g Citrus clementina HOM05D007306 ORTHO05D009112 1.9e-29 132.9 154 58.4
FAN02G3291 Fragaria x ananassa HOM05D007306 ORTHO05D009112 3.3e-29 132.1 143 55.2
TPR.G22157 Trifolium pratense HOM05D007306 ORTHO05D009112 3.3e-29 132.1 136 58.1
FAN09G2453 Fragaria x ananassa HOM05D007306 ORTHO05D009112 5.7e-29 131.3 141 56.0
Manes.08G044500 Manihot esculenta HOM05D007306 ORTHO05D009112 9.7e-29 130.6 156 53.2
Nitab4.5_0007619g0010 Nicotiana tabacum HOM05D007306 ORTHO05D009112 9.7e-29 130.6 143 53.1
Lalb_Chr18g0047871 Lupinus albus HOM05D007306 ORTHO05D009112 1.6e-28 129.8 140 59.3
TWI74G1393 Tripterygium wilfordii HOM05D007306 ORTHO05D009112 1.6e-28 129.8 142 57.7
Glyma.03G144700 Glycine max HOM05D007306 ORTHO05D009112 3.7e-28 128.6 139 55.4
Psat3g068560 Pisum sativum HOM05D007306 ORTHO05D009112 1.8e-27 126.3 135 54.8
vmacro07907 Vaccinium macrocarpon HOM05D007306 ORTHO05D009112 1.7e-25 119.8 148 51.4
Actinidia32393 Actinidia chinensis HOM05D007306 ORTHO05D009112 2.2e-25 119.4 147 51.7
Duzib106G0602 Durio zibethinus HOM05D007306 ORTHO05D009112 3.8e-25 118.6 144 49.3
Phvul.007G259800 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 3.8e-25 118.6 144 50.7
Phvul.001G142300 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 1.1e-24 117.1 136 54.4
Migut.J01836 Erythranthe guttata HOM05D007306 ORTHO05D009112 1.9e-24 116.3 145 49.7
A05p02730 Brassica napus HOM05D007306 ORTHO05D009112 3.2e-24 115.5 138 48.6
BraA05t19265Z Brassica rapa HOM05D007306 ORTHO05D009112 3.2e-24 115.5 138 48.6
Medtr7g093220 Medicago truncatula HOM05D007306 ORTHO05D009112 3.2e-24 115.5 135 54.1
Sed0004413 Sechium edule HOM05D007306 ORTHO05D009112 4.2e-24 115.2 149 49.7
BcaC02g12458 Brassica carinata HOM05D007306 ORTHO05D009112 7.2e-24 114.4 140 51.4
BcaC02g12459 Brassica carinata HOM05D007306 ORTHO05D009112 7.2e-24 114.4 140 51.4
C04p03260 Brassica napus HOM05D007306 ORTHO05D009112 7.2e-24 114.4 140 51.4
BolC4t21964H Brassica oleracea HOM05D007306 ORTHO05D009112 7.2e-24 114.4 140 51.4
BcaNung04408 Brassica carinata HOM05D007306 ORTHO05D009112 9.4e-24 114.0 140 50.0
PSO384G4645 Papaver somniferum HOM05D007306 ORTHO05D009112 9.4e-24 114.0 141 49.6
Glyma.19G147700 Glycine max HOM05D007306 ORTHO05D009112 1.2e-23 113.6 131 53.4
PSO339G5155 Papaver somniferum HOM05D007306 ORTHO05D009112 1.2e-23 113.6 141 49.6
AL4G40480 Arabidopsis lyrata HOM05D007306 ORTHO05D009112 3.6e-23 112.1 142 51.4
VMungo1383G3094 Vigna mungo HOM05D007306 ORTHO05D009112 3.6e-23 112.1 133 51.9
MSTRG.19909 Avicennia marina HOM05D007306 ORTHO05D009112 4.6e-23 111.7 139 49.6
Cc06_g15870 Coffea canephora HOM05D007306 ORTHO05D009112 6.1e-23 111.3 154 46.8
Actinidia22036 Actinidia chinensis HOM05D007306 ORTHO05D009112 1.0e-22 110.5 145 49.0
Aa31LG1G24110 Aethionema arabicum HOM05D007306 ORTHO05D009112 1.0e-22 110.5 134 47.8
MBI06_g29488_MAGBIO Magnolia biondii HOM05D007306 ORTHO05D009112 1.0e-22 110.5 132 53.8
VMungo0720G2523 Vigna mungo HOM05D007306 ORTHO05D009112 1.4e-22 110.2 144 47.9
Glyma.09G111500 Glycine max HOM05D007306 ORTHO05D009112 1.8e-22 109.8 141 51.1
Rhsim03G0005900 Rhododendron simsii HOM05D007306 ORTHO05D009112 1.8e-22 109.8 145 49.7
Sp4g24320 Schrenkiella parvula HOM05D007306 ORTHO05D009112 1.8e-22 109.8 139 46.8
AT2G42110 Arabidopsis thaliana HOM05D007306 ORTHO05D009112 3.0e-22 109.0 134 50.0
CARHR137170 Cardamine hirsuta HOM05D007306 ORTHO05D009112 5.1e-22 108.2 139 48.2
Oeu063786.1 Olea europaea HOM05D007306 ORTHO05D009112 6.7e-22 107.8 130 50.8
Hund24792 Selenicereus undatus HOM05D007306 ORTHO05D009112 8.8e-22 107.5 159 45.9
CsaV3_3G038820 Cucumis sativus L. HOM05D007306 ORTHO05D009112 1.1e-21 107.1 149 45.6
ClCG10G017530 Citrullus lanatus HOM05D007306 ORTHO05D009112 2.6e-21 105.9 149 45.6
MELO3C009626.2 Cucumis melo HOM05D007306 ORTHO05D009112 2.6e-21 105.9 149 45.6
SalBow6G0438 Salvia bowleyana HOM05D007306 ORTHO05D009112 3.3e-21 105.5 139 48.9
SalBow6G2293 Salvia bowleyana HOM05D007306 ORTHO05D009112 3.3e-21 105.5 139 48.9
Thhalv10017403m.g Eutrema salsugineum HOM05D007306 ORTHO05D009112 4.4e-21 105.1 140 47.9
Manes.09G035400 Manihot esculenta HOM05D007306 ORTHO05D009112 2.2e-20 102.8 139 48.9
Carub.0004s2445 Capsella rubella HOM05D007306 ORTHO05D009112 3.7e-20 102.1 134 48.5
CAN.G1143.4 Capsicum annuum HOM05D007306 ORTHO05D009112 3.7e-20 102.1 134 47.0
Sabra16G0049700 Salix brachista HOM05D007306 ORTHO05D009112 6.3e-20 101.3 111 56.8
Solyc03g120950.3 Solanum lycopersicum HOM05D007306 ORTHO05D009112 2.4e-19 99.4 135 46.7
Sopen03g039780 Solanum pennellii HOM05D007306 ORTHO05D009112 2.4e-19 99.4 131 48.1
SGA_v2.0_scaffold69G23062 Striga asiatica HOM05D007306 ORTHO05D009112 2.4e-19 99.4 138 47.8
PGSC0003DMG400002614 Solanum tuberosum HOM05D007306 ORTHO05D009112 1.5e-18 96.7 135 45.9
Lsat_1_v5_gn_5_163480 Lactuca sativa HOM05D007306 ORTHO05D009112 4.5e-18 95.1 140 45.7
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 5.9e-18 94.7 138 46.4
AUR62015369 Chenopodium quinoa HOM05D007306 ORTHO05D009112 1.7e-17 93.2 153 45.1
HanXRQChr13g0390881 Helianthus annuus HOM05D007306 ORTHO05D009112 2.2e-17 92.8 147 44.9
AUR62012035 Chenopodium quinoa HOM05D007306 ORTHO05D009112 5.0e-17 91.7 146 45.2
GSVIVG01033497001 Vitis vinifera HOM05D007306 ORTHO05D009112 1.4e-16 90.1 141 43.3
Ca_08521_v3 Cicer arietinum L. HOM05D007306 ORTHO05D009112 5.5e-16 88.2 109 56.0
THA.LOC104802563 Tarenaya hassleriana HOM05D007306 ORTHO05D009112 3.6e-15 85.5 133 41.4
ECA248G3448 Erigeron canadensis HOM05D007306 ORTHO05D009112 7.4e-13 77.8 142 38.7
CDE02G0820 Ceratophyllum demersum HOM05D007306 ORTHO05D009112 1.1e-11 73.9 136 36.8
Os03g0128300 Oryza sativa ssp. japonica HOM05D007306 ORTHO05D009112 1.4e-11 73.6 154 39.0
EL10Ac3g06917 Beta vulgaris HOM05D007306 ORTHO05D009112 5.3e-11 71.6 163 33.7
Ah.04g152480 Amaranthus hybridus HOM05D007306 ORTHO05D009112 1.6e-10 70.1 162 34.6
ATR0807G086 Amborella trichopoda HOM05D007306 ORTHO05D009112 7.7e-10 67.8 133 37.6
Sc19g0007100 Simmondsia chinensis HOM05D007306 ORTHO05D009112 2.2e-09 66.2 85 44.7
Haze_19991 Corylus avellana HOM05D000267 ORTHO05D000298 1.1e-08 63.9 29 96.6
Sed0003989 Sechium edule HOM05D007306 ORTHO05D009112 3.2e-08 62.4 91 44.0
unitig_22.g6026 Utricularia gibba HOM05D007306 ORTHO05D009112 4.2e-08 62.0 132 37.1
CSS0009036 Camellia sinensis var. sinensis HOM05D007306 ORTHO05D009112 4.0e-06 55.5 93 37.6
CDE07G0177 Ceratophyllum demersum HOM05D064968 ORTHO05D009112 8.8e-06 54.3 122 34.4
DCAR_013544 Daucus carota HOM05D002612 ORTHO05D002859 8.8e-06 54.3 116 39.7


User provided reference genes

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