Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 0.0e+00 1582.8 823 100.0
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 0.0e+00 1222.6 765 83.0
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 0.0e+00 1192.2 927 73.6
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 0.0e+00 1185.2 760 81.1
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 0.0e+00 1119.4 827 71.3
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 0.0e+00 1112.8 762 76.1
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 0.0e+00 1112.8 891 67.3
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 0.0e+00 1112.4 762 76.5
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 0.0e+00 1112.4 762 76.5
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 0.0e+00 1111.7 762 75.9
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 0.0e+00 1108.6 762 76.4
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 0.0e+00 1108.6 913 66.8
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 0.0e+00 1103.6 762 76.0
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 0.0e+00 1092.0 722 78.5
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 0.0e+00 1091.6 829 70.4
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 0.0e+00 1079.3 762 74.1
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 0.0e+00 1075.5 762 73.8
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.3e-311 1072.0 792 72.5
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 7.3e-310 1067.0 760 73.0
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 9.8e-307 1056.6 762 73.6
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.9e-305 1052.4 762 73.6
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 7.0e-305 1050.4 765 72.0
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 2.0e-304 1048.9 765 72.0
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 2.7e-304 1048.5 762 72.4
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 6.0e-304 1047.3 762 72.4
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 9.5e-302 1040.0 763 72.3
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 6.8e-300 1033.9 793 70.2
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 8.9e-300 1033.5 834 67.4
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 1.5e-299 1032.7 761 71.7
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 9.8e-299 1030.0 758 71.9
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 3.5e-296 1021.5 783 69.7
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 2.3e-295 1018.8 762 70.3
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 8.6e-295 1016.9 834 67.1
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 1.5e-294 1016.1 762 71.0
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 2.5e-294 1015.4 834 65.9
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 3.3e-294 1015.0 762 70.6
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 3.3e-294 1015.0 760 70.9
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 2.1e-293 1012.3 762 71.0
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 3.1e-292 1008.4 762 70.5
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 1.7e-290 1002.7 789 68.8
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 8.3e-290 1000.3 762 70.3
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 1.9e-289 999.2 762 70.6
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 9.2e-289 996.9 763 69.7
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.2e-288 996.5 778 69.8
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 3.3e-286 988.4 762 68.2
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 4.9e-282 974.5 758 68.9
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 9.3e-281 970.3 763 68.9
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 1.0e-279 966.8 762 67.2
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.7e-279 966.1 842 61.9
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 4.8e-277 958.0 763 68.2
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 7.1e-273 944.1 768 65.1
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 8.7e-271 937.2 762 65.6
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 8.7e-271 937.2 793 64.8
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 1.1e-270 936.8 762 66.1
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 6.2e-269 931.0 706 70.5
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 4.5e-267 924.9 765 65.6
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 9.9e-267 923.7 762 65.1
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 1.9e-265 919.5 762 63.8
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 2.4e-265 919.1 757 63.3
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 8.7e-263 910.6 758 63.5
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 3.3e-262 908.7 758 62.7
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 7.4e-262 907.5 776 63.1
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 1.3e-261 906.7 764 64.7
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 1.4e-260 903.3 775 63.2
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 2.2e-258 896.0 812 61.8
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 6.5e-258 894.4 766 62.5
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 7.9e-256 887.5 770 61.8
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 6.7e-255 884.4 758 61.3
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 8.2e-253 877.5 761 60.8
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 2.4e-252 875.9 824 57.5
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 5.3e-252 874.8 826 58.0
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 5.5e-249 864.8 826 57.0
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 5.1e-247 858.2 794 59.4
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 5.3e-244 848.2 655 69.6
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 6.9e-244 847.8 763 61.7
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 6.9e-244 847.8 775 60.0
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 2.6e-243 845.9 768 60.0
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 1.7e-242 843.2 762 59.3
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 6.5e-242 841.3 775 59.5
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 7.2e-241 837.8 841 54.7
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 3.6e-240 835.5 826 56.1
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 1.4e-239 833.6 857 54.0
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 5.5e-233 811.6 757 58.3
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 5.5e-233 811.6 746 58.8
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 1.6e-232 810.1 757 58.0
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 3.6e-232 808.9 757 58.5
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.6e-227 792.7 757 56.4
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 3.3e-222 775.8 767 57.8
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 7.7e-219 764.6 512 81.4
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 1.6e-211 740.3 762 54.3
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 1.1e-209 734.2 750 52.7
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 1.4e-207 727.2 837 51.9
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 1.4e-207 727.2 837 51.9
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 1.1e-201 707.6 755 54.6
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 4.7e-200 702.2 669 58.6
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 2.9e-197 693.0 848 48.1
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 4.9e-197 692.2 668 58.7
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 2.7e-195 686.4 434 80.2
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 2.4e-188 663.3 772 51.2
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 1.5e-185 654.1 762 47.9
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 4.9e-181 639.0 620 58.5
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 7.1e-180 635.2 712 51.0
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 3.0e-178 629.8 835 44.3
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 9.9e-174 614.8 620 56.6
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 2.1e-168 597.0 399 75.2
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 9.6e-161 571.6 747 43.8
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 9.6e-161 571.6 599 50.8
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 3.2e-156 556.6 500 61.2
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 3.5e-155 553.1 443 62.8
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 3.1e-151 540.0 555 56.6
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 6.3e-128 462.6 260 88.5
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 4.4e-121 439.9 573 46.9
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 4.8e-112 409.8 528 49.6
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 9.5e-92 342.4 363 53.4
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 6.3e-88 329.7 239 74.1
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 8.9e-82 309.3 194 76.3
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 4.1e-71 273.9 173 79.8
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 2.4e-63 248.1 215 60.0
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 6.8e-58 229.9 143 76.2
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 6.9e-50 203.4 142 69.0
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 9.0e-50 203.0 142 68.3
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.4e-47 194.9 118 83.1
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 2.4e-47 194.9 143 64.3
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 1.6e-38 165.6 99 80.8
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 3.5e-38 164.5 114 71.9
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 3.8e-32 144.4 85 82.4
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-29 136.3 157 41.4
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 5.6e-28 130.6 212 35.4
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 2.1e-27 128.6 462 26.2
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 3.7e-27 127.9 91 69.2
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 8.2e-27 126.7 100 62.0
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.4e-26 125.9 74 86.5
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 1.2e-22 112.8 128 44.5
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 1.2e-22 112.8 105 49.5
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 2.7e-22 111.7 543 22.1
Manes.09G038400 Manihot esculenta HOM05D004031 ORTHO05D011186 5.3e-18 97.4 54 81.5
Potri.016G060550 Populus trichocarpa HOM05D004031 ORTHO05D011186 5.3e-18 97.4 54 79.6
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 9.0e-18 96.7 154 35.1
CiPaw.09G027900 Carya illinoinensis HOM05D004031 ORTHO05D011186 2.0e-17 95.5 53 84.9
GSVIVG01033459001 Vitis vinifera HOM05D004031 ORTHO05D011186 3.4e-17 94.7 52 84.6
MD12G1054200 Malus domestica HOM05D004031 ORTHO05D011186 7.6e-17 93.6 52 82.7
Prupe.7G082600 Prunus persica HOM05D004031 ORTHO05D011186 7.6e-17 93.6 52 82.7
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 2.9e-16 91.7 333 27.6
CDE05G3199 Ceratophyllum demersum HOM05D004031 ORTHO05D011186 3.8e-16 91.3 54 79.6
Eucgr.K01857 Eucalyptus grandis HOM05D004031 ORTHO05D011186 6.5e-16 90.5 54 79.6
Thecc.05G176000 Theobroma cacao HOM05D004031 ORTHO05D011186 6.5e-16 90.5 54 75.9
Nn7g35951 Nelumbo nucifera HOM05D004031 ORTHO05D011186 8.5e-16 90.1 53 77.4
Nn7g36859 Nelumbo nucifera HOM05D004031 ORTHO05D011186 3.2e-15 88.2 53 77.4
Gohir.A01G137400 Gossypium hirsutum HOM05D004031 ORTHO05D011186 4.2e-15 87.8 54 74.1
MELO3C009606.2 Cucumis melo HOM05D004031 ORTHO05D011186 5.5e-15 87.4 53 75.5
Sed0024429 Sechium edule HOM05D004031 ORTHO05D011186 7.2e-15 87.0 53 77.4
Gohir.D01G124600 Gossypium hirsutum HOM05D004031 ORTHO05D011186 1.2e-14 86.3 54 72.2
RcHm_v2.0_Chr3g0479131 Rosa chinensis HOM05D004031 ORTHO05D011186 2.1e-14 85.5 52 73.1
Medtr7g093770 Medicago truncatula HOM05D004031 ORTHO05D011186 3.6e-14 84.7 52 73.1
CSS0013106 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D011186 4.6e-14 84.3 54 68.5
Glyma.19G150500 Glycine max HOM05D004031 ORTHO05D011186 6.1e-14 84.0 53 75.5
Phvul.001G144800 Phaseolus vulgaris HOM05D004031 ORTHO05D011186 1.3e-13 82.8 53 73.6
A03p37430 Brassica napus HOM05D004031 ORTHO05D011186 3.0e-13 81.6 57 70.2
Duzib128G0401 Durio zibethinus HOM05D004031 ORTHO05D011186 3.0e-13 81.6 54 68.5
Hma1.2p1_0124F.1_g058300 Hydrangea macrophylla HOM05D004031 ORTHO05D011186 3.0e-13 81.6 54 70.4
Lj1g0020490 Lotus japonicus HOM05D004031 ORTHO05D011186 3.9e-13 81.3 50 72.0
Lalb_Chr15g0079141 Lupinus albus HOM05D004031 ORTHO05D011186 3.9e-13 81.3 53 73.6
Carub.0003s1134 Capsella rubella HOM05D004031 ORTHO05D011186 5.1e-13 80.9 56 73.2
Migut.J01860 Erythranthe guttata HOM05D004031 ORTHO05D011186 4.3e-12 77.8 54 66.7
Aa31LG3G5490 Aethionema arabicum HOM05D004031 ORTHO05D011186 5.7e-12 77.4 56 67.9
Aa31LG3G5450 Aethionema arabicum HOM05D004031 ORTHO05D011186 7.4e-12 77.0 56 67.9
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 9.7e-12 76.6 61 59.0
Glyma.03G147100 Glycine max HOM05D004031 ORTHO05D011186 1.7e-11 75.9 50 74.0
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 2.2e-11 75.5 47 80.9
Cc06_g15560 Coffea canephora HOM05D004031 ORTHO05D011186 1.1e-10 73.2 56 62.5
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 1.2e-09 69.7 65 58.5
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 1.4e-07 62.8 75 46.7
SEGI_01182 Sequoiadendron giganteum HOM05D004031 ORTHO05D011186 1.6e-06 59.3 32 84.4
Mapoly0005s0168 Marchantia polymorpha HOM05D004031 ORTHO05D011186 7.9e-06 57.0 49 46.9
Medtr8g106830 Medicago truncatula HOM05D004031 ORTHO05D006678 7.9e-06 57.0 49 59.2
Hund06156 Selenicereus undatus HOM05D000159 ORTHO05D011186 7.9e-06 57.0 31 77.4


User provided reference genes

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