Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 7.8e-152 540.4 273 100.0
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 3.5e-128 461.8 244 95.1
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 3.6e-96 355.5 219 78.5
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 8.3e-93 344.4 253 71.9
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 1.6e-91 340.1 246 69.5
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 2.0e-91 339.7 242 70.7
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 4.5e-91 338.6 236 71.2
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 4.5e-91 338.6 242 69.8
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 1.5e-89 333.6 243 69.1
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 5.5e-89 331.6 245 68.6
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 5.5e-89 331.6 247 66.8
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 2.1e-88 329.7 245 67.3
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 3.6e-88 328.9 220 74.5
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 8.0e-88 327.8 242 69.4
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 1.4e-87 327.0 245 67.3
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 2.3e-87 326.2 219 70.8
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 2.3e-87 326.2 219 71.2
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 2.3e-87 326.2 238 70.6
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 4.0e-87 325.5 243 67.1
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 6.8e-87 324.7 242 68.6
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 8.8e-87 324.3 244 68.4
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 2.6e-86 322.8 220 73.6
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 2.6e-86 322.8 219 72.1
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 3.4e-86 322.4 234 67.9
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 3.4e-86 322.4 219 72.6
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 4.4e-86 322.0 220 71.4
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 4.4e-86 322.0 244 68.4
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 5.7e-86 321.6 236 68.6
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 2.2e-85 319.7 229 68.6
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 2.2e-85 319.7 245 63.7
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 2.2e-85 319.7 225 68.9
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 4.8e-85 318.5 220 71.8
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 4.8e-85 318.5 240 67.5
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 8.3e-85 317.8 220 70.5
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 8.3e-85 317.8 243 66.7
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 1.4e-84 317.0 244 66.0
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 1.8e-84 316.6 243 66.3
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 2.4e-84 316.2 245 64.1
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 3.1e-84 315.8 242 64.9
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 3.1e-84 315.8 220 70.0
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 4.1e-84 315.5 220 70.9
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 5.4e-84 315.1 226 69.0
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 5.4e-84 315.1 223 70.9
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 9.1e-84 314.3 231 68.8
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 2.7e-83 312.8 248 66.5
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 4.5e-83 312.0 238 66.0
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 2.9e-82 309.3 259 61.8
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 3.8e-82 308.9 225 68.0
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 3.8e-82 308.9 215 67.9
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 6.6e-82 308.1 243 62.1
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 6.6e-82 308.1 219 69.9
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 1.1e-81 307.4 230 65.7
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.5e-81 307.0 230 65.7
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 2.5e-81 306.2 224 69.2
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 3.3e-81 305.8 230 64.8
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 3.3e-81 305.8 242 64.9
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 3.3e-81 305.8 224 63.8
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 3.3e-81 305.8 224 63.8
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 4.2e-81 305.4 243 65.4
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 7.2e-81 304.7 230 64.8
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 1.6e-80 303.5 228 67.1
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 1.6e-80 303.5 220 68.6
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 2.3e-79 299.7 221 65.6
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 4.0e-79 298.9 219 66.7
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 6.8e-79 298.1 230 65.2
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 1.2e-78 297.4 223 65.5
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 1.5e-78 297.0 248 61.7
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.5e-78 297.0 244 61.5
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 3.4e-78 295.8 243 61.7
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 5.7e-78 295.0 245 63.3
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 2.8e-77 292.7 222 65.3
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 2.8e-77 292.7 257 57.6
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 3.7e-77 292.4 222 65.3
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 6.3e-77 291.6 250 58.0
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 6.3e-77 291.6 250 58.8
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 2.4e-76 289.7 237 63.3
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 5.4e-76 288.5 239 63.6
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 5.4e-76 288.5 233 61.4
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 7.0e-76 288.1 222 62.6
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 1.2e-75 287.3 212 65.6
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 7.3e-73 278.1 217 63.1
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 1.2e-72 277.3 213 64.3
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 1.6e-72 276.9 217 63.1
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 1.6e-72 276.9 221 62.9
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 1.6e-72 276.9 229 60.3
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 3.6e-72 275.8 217 62.7
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 4.0e-71 272.3 233 61.4
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.5e-70 270.4 222 62.2
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 4.4e-70 268.9 246 57.3
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 5.8e-70 268.5 235 57.4
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 7.5e-70 268.1 245 58.4
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.5e-67 259.2 228 57.9
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 1.7e-61 240.4 227 59.0
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 9.5e-57 224.6 229 49.3
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 5.2e-55 218.8 233 49.8
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 8.9e-55 218.0 129 73.6
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 3.4e-54 216.1 129 76.7
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 3.2e-52 209.5 177 62.1
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 9.2e-52 208.0 125 74.4
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 4.6e-51 205.7 125 72.8
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.9e-50 202.6 151 64.9
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.1e-49 201.1 150 64.7
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 1.6e-48 197.2 198 53.5
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 2.4e-47 193.4 177 55.4
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 5.2e-47 192.2 216 50.9
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 2.9e-45 186.4 256 39.1
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 3.8e-45 186.0 168 60.1
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 6.4e-45 185.3 149 65.1
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 5.1e-42 175.6 104 75.0
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 5.8e-38 162.2 137 57.7
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 1.7e-37 160.6 154 53.2
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 5.4e-36 155.6 106 70.8
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 4.3e-33 146.0 142 52.8
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 1.3e-32 144.4 120 60.8
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 9.0e-31 138.3 77 80.5
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 1.5e-30 137.5 154 45.5
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 3.4e-30 136.3 134 56.0
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 7.6e-30 135.2 79 75.9
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 9.9e-30 134.8 78 79.5
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.2e-29 133.7 79 78.5
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.8e-29 132.9 79 77.2
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.8e-29 132.9 79 77.2
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 6.4e-29 132.1 78 78.2
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 6.4e-29 132.1 78 78.2
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 3.1e-23 113.2 67 73.1
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 1.5e-22 110.9 124 53.2
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 2.6e-22 110.2 115 53.9
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 1.2e-19 101.3 66 66.7
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 1.8e-18 97.4 147 41.5
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 3.9e-18 96.3 79 60.8
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 8.7e-18 95.1 147 38.8
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 2.8e-16 90.1 49 79.6
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 8.2e-16 88.6 73 60.3
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 2.4e-15 87.0 55 69.1
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 1.2e-14 84.7 91 50.5
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 1.2e-14 84.7 82 53.7
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.6e-14 83.6 51 70.6
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 5.8e-14 82.4 52 65.4
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 2.2e-13 80.5 64 60.9
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 4.2e-12 76.3 53 58.5
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 9.3e-12 75.1 168 32.1
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 4.6e-11 72.8 67 55.2
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 6.1e-11 72.4 167 26.9
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 3.0e-10 70.1 187 25.7
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 3.9e-10 69.7 163 27.6
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 1.9e-09 67.4 174 26.4
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 7.4e-09 65.5 208 24.0
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 2.2e-08 63.9 133 31.6
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 2.8e-08 63.5 173 28.9
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 2.8e-08 63.5 169 26.0
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 2.4e-07 60.5 34 70.6
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 3.4e-06 56.6 35 68.6


User provided reference genes

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