Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 2.0e-77 292.4 149 100.0
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 1.7e-60 236.1 125 94.4
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 3.5e-53 211.8 124 85.5
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 1.1e-49 200.3 140 71.4
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 5.2e-49 198.0 142 72.5
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 3.4e-48 195.3 122 76.2
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 4.4e-48 194.9 114 82.5
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 5.8e-48 194.5 123 74.8
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 5.8e-48 194.5 123 78.9
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 1.3e-47 193.4 123 78.9
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 1.3e-47 193.4 122 74.6
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.7e-47 193.0 117 80.3
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 3.7e-47 191.8 125 79.2
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 3.7e-47 191.8 112 82.1
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 4.9e-47 191.4 123 77.2
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.4e-46 189.9 123 76.4
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 1.4e-46 189.9 117 79.5
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 1.9e-46 189.5 125 76.0
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 2.4e-46 189.1 123 75.6
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 2.4e-46 189.1 117 76.1
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 2.4e-46 189.1 112 84.8
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 9.2e-46 187.2 108 80.6
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 2.0e-45 186.0 123 76.4
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 2.7e-45 185.7 117 76.9
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 4.6e-45 184.9 123 73.2
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 4.6e-45 184.9 109 78.9
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 4.6e-45 184.9 117 78.6
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 7.8e-45 184.1 122 74.6
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 1.0e-44 183.7 115 76.5
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 1.3e-44 183.3 123 73.2
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 1.7e-44 183.0 112 78.6
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 2.3e-44 182.6 122 76.2
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 3.0e-44 182.2 104 81.7
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 3.0e-44 182.2 125 73.6
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 3.9e-44 181.8 117 76.1
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 6.6e-44 181.0 123 69.9
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 1.1e-43 180.3 104 83.7
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 1.5e-43 179.9 105 83.8
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 1.5e-43 179.9 122 75.4
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 1.5e-43 179.9 124 72.6
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 2.5e-43 179.1 124 72.6
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 3.3e-43 178.7 125 71.2
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 4.3e-43 178.3 104 83.7
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 5.6e-43 177.9 118 77.1
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.2e-42 176.8 114 75.4
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 1.2e-42 176.8 124 71.8
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 1.6e-42 176.4 125 69.6
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 2.1e-42 176.0 103 82.5
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 2.1e-42 176.0 105 80.0
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 2.8e-42 175.6 108 78.7
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 2.8e-42 175.6 118 74.6
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 2.8e-42 175.6 118 74.6
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 3.6e-42 175.3 108 78.7
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 3.6e-42 175.3 117 72.6
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 3.6e-42 175.3 117 73.5
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 3.6e-42 175.3 114 73.7
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 8.1e-42 174.1 103 81.6
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 8.1e-42 174.1 104 79.8
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 1.1e-41 173.7 112 77.7
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 1.1e-41 173.7 115 75.7
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 1.8e-41 172.9 115 74.8
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 1.8e-41 172.9 112 75.0
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 2.3e-41 172.6 123 71.5
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 3.1e-41 172.2 105 79.0
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 4.0e-41 171.8 108 75.9
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 4.0e-41 171.8 108 73.1
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 6.8e-41 171.0 123 69.1
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 6.8e-41 171.0 115 72.2
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 8.9e-41 170.6 103 77.7
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 1.2e-40 170.2 108 75.0
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 2.0e-40 169.5 103 78.6
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 2.0e-40 169.5 103 78.6
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 2.6e-40 169.1 103 82.5
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 3.4e-40 168.7 104 77.9
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 4.4e-40 168.3 104 76.0
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 4.4e-40 168.3 120 68.3
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 4.4e-40 168.3 101 77.2
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 5.8e-40 167.9 103 79.6
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 7.5e-40 167.5 118 69.5
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 7.5e-40 167.5 114 71.1
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 1.7e-39 166.4 116 69.8
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 2.9e-39 165.6 116 69.0
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 4.9e-39 164.9 106 74.5
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 1.1e-38 163.7 100 80.0
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 1.4e-38 163.3 108 70.4
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 1.4e-38 163.3 116 68.1
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 1.9e-38 162.9 116 67.2
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 1.9e-38 162.9 116 67.2
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 1.9e-38 162.9 116 67.2
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 1.9e-38 162.9 116 69.0
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 3.2e-38 162.2 121 68.6
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 3.2e-38 162.2 104 75.0
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 7.1e-38 161.0 103 73.8
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 7.1e-38 161.0 103 74.8
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 9.2e-38 160.6 116 65.5
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 1.5e-35 153.3 116 65.5
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 3.6e-34 148.7 103 66.0
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 8.1e-34 147.5 90 77.8
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 8.1e-34 147.5 90 77.8
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 8.9e-33 144.1 103 66.0
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 2.1e-29 132.9 86 73.3
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 7.8e-29 131.0 97 71.1
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 1.5e-27 126.7 108 54.6
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 2.8e-26 122.5 73 79.5
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 4.0e-25 118.6 72 77.8
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 4.2e-22 108.6 119 47.1
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 3.3e-19 99.0 102 46.1
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 9.6e-19 97.4 102 45.1
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.3e-18 97.1 107 49.5
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 2.8e-18 95.9 107 46.7
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 2.8e-18 95.9 58 84.5
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 2.0e-16 89.7 65 73.8
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 5.6e-11 71.6 48 81.2
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 5.6e-11 71.6 48 81.2
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 9.6e-11 70.9 42 88.1
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 2.4e-06 56.2 36 83.3


User provided reference genes

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