Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 5.1e-252 874.0 467 100.0
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 4.3e-198 694.9 400 87.8
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 4.3e-190 668.3 449 81.5
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 3.1e-188 662.1 455 76.5
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 4.4e-179 631.7 399 80.2
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 3.2e-177 625.5 402 77.9
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 4.1e-177 625.2 396 79.5
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 1.3e-175 620.2 398 78.4
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 1.3e-175 620.2 400 78.2
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.1e-174 617.1 399 77.4
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 2.5e-174 615.9 400 79.0
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 8.1e-173 610.9 397 79.3
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 8.1e-173 610.9 399 77.7
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.8e-172 609.8 405 77.5
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 2.4e-172 609.4 398 79.1
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 3.1e-172 609.0 398 78.9
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.0e-171 606.3 399 77.2
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 2.6e-171 605.9 398 78.6
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.4e-171 605.5 398 78.1
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 4.4e-171 605.1 402 77.4
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.3e-170 603.6 396 77.0
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.9e-170 602.4 398 77.6
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 5.4e-169 598.2 402 75.6
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 6.0e-168 594.7 402 74.4
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 6.6e-167 591.3 448 68.8
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.5e-163 580.1 372 79.8
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 7.6e-163 577.8 405 72.6
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 8.4e-162 574.3 398 75.9
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 1.3e-157 560.5 398 73.1
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 2.8e-157 559.3 400 70.8
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 5.3e-156 555.1 403 72.7
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.3e-154 550.4 399 70.7
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 2.4e-153 546.2 401 70.1
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 4.2e-153 545.4 397 70.5
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 4.2e-153 545.4 399 68.7
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 7.1e-153 544.7 400 70.2
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.2e-152 543.9 400 70.2
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 1.6e-152 543.5 395 69.9
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 2.7e-152 542.7 338 81.4
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.0e-151 540.8 400 70.0
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 1.0e-151 540.8 397 70.0
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 5.1e-151 538.5 400 68.5
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 2.5e-150 536.2 340 80.0
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 4.3e-150 535.4 397 70.0
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 4.0e-148 528.9 400 68.8
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 6.9e-148 528.1 401 68.1
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 2.0e-147 526.6 403 66.7
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 3.8e-146 522.3 398 68.8
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 1.9e-145 520.0 405 67.7
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 7.1e-145 518.1 400 67.8
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 7.9e-144 514.6 400 67.2
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 1.0e-143 514.2 405 67.2
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 1.3e-143 513.8 400 66.8
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 6.7e-143 511.5 398 67.3
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 1.1e-142 510.8 403 67.0
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 3.3e-142 509.2 415 66.3
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 9.6e-142 507.7 330 77.9
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 2.8e-141 506.1 401 64.1
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.1e-140 504.2 324 79.3
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 1.4e-140 503.8 400 67.5
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 4.1e-140 502.3 341 73.9
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 3.4e-139 499.2 407 65.8
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 5.8e-139 498.4 398 66.1
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 2.5e-137 493.0 399 65.4
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.2e-136 490.7 401 63.6
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 3.5e-136 489.2 428 61.4
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 1.3e-135 487.3 395 63.8
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 1.8e-135 486.9 395 63.8
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 5.1e-135 485.3 395 63.5
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 6.7e-135 485.0 348 70.4
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 1.1e-134 484.2 398 64.6
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 4.3e-134 482.3 398 64.1
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 4.3e-134 482.3 408 61.3
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 9.7e-134 481.1 395 63.3
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 4.8e-133 478.8 384 63.3
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 1.4e-132 477.2 436 59.4
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 1.4e-132 477.2 400 63.5
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 3.1e-132 476.1 401 63.1
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 1.5e-131 473.8 417 59.7
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 7.7e-131 471.5 402 62.7
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 1.3e-130 470.7 400 62.8
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 1.3e-130 470.7 400 62.8
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 1.3e-130 470.7 359 68.5
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 1.7e-130 470.3 407 63.6
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 5.0e-130 468.8 400 62.5
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 5.5e-129 465.3 401 62.3
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 3.6e-128 462.6 391 62.7
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.3e-127 459.9 369 67.8
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 3.7e-125 452.6 337 70.0
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 1.8e-124 450.3 345 69.3
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 3.1e-124 449.5 352 72.2
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 4.1e-124 449.1 406 59.9
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 5.9e-123 445.3 407 60.0
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 1.0e-122 444.5 405 60.0
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 3.8e-122 442.6 393 60.1
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.5e-121 438.7 281 79.7
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 2.7e-120 436.4 404 60.4
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.1e-118 431.0 400 59.5
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.2e-117 426.8 281 78.6
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 6.3e-117 425.2 406 57.4
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 8.2e-117 424.9 326 68.1
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 2.9e-114 416.4 283 75.6
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 3.2e-113 412.9 300 71.7
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 4.8e-109 399.1 336 63.1
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 1.2e-107 394.4 451 53.2
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 7.2e-105 385.2 313 64.5
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 1.1e-100 371.3 324 61.7
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 7.7e-99 365.2 330 59.1
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.7e-93 346.3 371 55.8
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 2.3e-79 300.4 215 72.1
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 2.8e-72 276.9 209 67.9
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 2.9e-61 240.4 417 38.4
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 3.7e-61 240.0 411 39.2
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 1.9e-60 237.7 327 46.8
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 1.6e-59 234.6 127 92.9
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 6.8e-55 219.2 126 88.1
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 1.9e-49 201.1 124 82.3
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 5.8e-46 189.5 409 31.1
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 1.2e-30 138.7 104 70.2
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 5.5e-28 129.8 88 75.0
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 9.6e-25 119.0 92 68.5
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.3e-24 118.6 72 81.9
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 5.3e-23 113.2 78 75.6
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 5.3e-23 113.2 103 58.3
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 3.4e-22 110.5 113 45.1
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 3.0e-18 97.4 154 39.0
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 5.7e-09 66.6 172 29.1
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.1e-07 62.4 93 39.8


User provided reference genes

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