Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019988 Carpinus fangiana HOM05D008349 ORTHO05D010116 1.5e-40 169.1 84 100.0
CiPaw.09G049400 Carya illinoinensis HOM05D008349 ORTHO05D010116 6.6e-25 117.1 86 75.6
CiPaw.10G041900 Carya illinoinensis HOM05D008349 ORTHO05D010116 3.3e-24 114.8 85 72.9
QL07p011743 Quercus lobata HOM05D008349 ORTHO05D010116 1.2e-23 112.8 83 69.9
Potri.006G036700 Populus trichocarpa HOM05D008349 ORTHO05D010116 3.5e-18 94.7 90 61.1
Potri.016G034950 Populus trichocarpa HOM05D008349 ORTHO05D010116 3.5e-18 94.7 88 58.0
Manes.08G060951 Manihot esculenta HOM05D008349 ORTHO05D010116 8.6e-17 90.1 87 58.6
Nn7g36871 Nelumbo nucifera HOM05D008349 ORTHO05D010116 1.9e-16 89.0 85 60.0
TAR622G0427 Trochodendron aralioides HOM05D008349 ORTHO05D010116 4.7e-15 84.3 76 61.8
TAR633G0966 Trochodendron aralioides HOM05D008349 ORTHO05D010116 4.7e-15 84.3 76 61.8
Rhsim04G0113000 Rhododendron simsii HOM05D008349 ORTHO05D010116 1.4e-14 82.8 91 51.6
Thecc.05G124300 Theobroma cacao HOM05D008349 ORTHO05D010116 8.9e-14 80.1 80 58.8
Prupe.7G031000 Prunus persica HOM05D008349 ORTHO05D010116 1.5e-13 79.3 83 59.0
QL01p016614 Quercus lobata HOM05D008349 ORTHO05D010116 2.2e-12 75.5 83 51.8
EL10Ac3g07259 Beta vulgaris HOM05D008349 ORTHO05D010116 6.4e-12 73.9 100 49.0
Manes.02G138100 Manihot esculenta HOM05D008349 ORTHO05D010116 6.4e-12 73.9 88 51.1
Manes.09G003300 Manihot esculenta HOM05D008349 ORTHO05D010116 8.4e-12 73.6 94 52.1
Dinv21476 Davidia involucrata HOM05D001268 ORTHO05D010116 1.4e-11 72.8 79 55.7
TAR636G0649 Trochodendron aralioides HOM05D008349 ORTHO05D010116 1.4e-11 72.8 76 57.9
Dinv22212 Davidia involucrata HOM05D008349 ORTHO05D010116 4.1e-11 71.2 84 48.8
Sabra16G0037400 Salix brachista HOM05D008349 ORTHO05D010116 9.2e-11 70.1 77 53.2
CiPaw.13G148400 Carya illinoinensis HOM05D008349 ORTHO05D010116 7.8e-10 67.0 86 48.8
Cpa.g.sc92.87 Carica papaya HOM05D008349 ORTHO05D010116 3.0e-09 65.1 95 47.4
Potri.009G068800 Populus trichocarpa HOM05D008349 ORTHO05D010116 8.7e-09 63.5 87 50.6
Hma1.2p1_0460F.1_g157620 Hydrangea macrophylla HOM05D008349 ORTHO05D010116 1.1e-08 63.2 90 46.7
VMungo0540G1528 Vigna mungo HOM05D012946 ORTHO05D010116 1.1e-08 63.2 71 47.9
Aqoxy2G00445 Aquilegia oxysepala HOM05D008349 ORTHO05D010116 1.5e-08 62.8 89 44.9
Phvul.006G016000 Phaseolus vulgaris HOM05D012946 ORTHO05D010116 1.5e-08 62.8 83 44.6
Gohir.A13G002000 Gossypium hirsutum HOM05D008349 ORTHO05D010116 5.6e-08 60.8 79 46.8
Gohir.D13G001400 Gossypium hirsutum HOM05D008349 ORTHO05D010116 5.6e-08 60.8 79 46.8
Gorai.013G001300 Gossypium raimondii HOM05D008349 ORTHO05D010116 5.6e-08 60.8 79 46.8
Phvul.001G120900 Phaseolus vulgaris HOM05D008349 ORTHO05D010116 5.6e-08 60.8 64 54.7
Gorai.004G015200 Gossypium raimondii HOM05D040658 ORTHO05D010116 7.3e-08 60.5 72 50.0
TAR623G1299 Trochodendron aralioides HOM05D008349 ORTHO05D010116 1.6e-07 59.3 60 48.3
Glyma.19G128400 Glycine max HOM05D008349 ORTHO05D010116 2.1e-07 58.9 68 50.0
Potri.001G274200 Populus trichocarpa HOM05D008349 ORTHO05D010116 2.8e-07 58.5 87 44.8
Sabra09G0051800 Salix brachista HOM05D008349 ORTHO05D010116 2.8e-07 58.5 84 47.6
TPR.G16083 Trifolium pratense HOM05D008349 ORTHO05D010116 2.8e-07 58.5 53 56.6
DCAR_020585 Daucus carota HOM05D008349 ORTHO05D010116 6.2e-07 57.4 93 46.2
Glyma.03G125900 Glycine max HOM05D008349 ORTHO05D010116 6.2e-07 57.4 69 47.8
Lj6g0008281 Lotus japonicus HOM05D012946 ORTHO05D010116 6.2e-07 57.4 74 45.9
Sopen10g031420 Solanum pennellii HOM05D008349 ORTHO05D010116 6.2e-07 57.4 85 49.4
Medtr7g089320 Medicago truncatula HOM05D008349 ORTHO05D010116 8.1e-07 57.0 79 46.8
Oeu009528.1 Olea europaea HOM05D043181 ORTHO05D010116 1.1e-06 56.6 80 47.5
Thecc.09G245500 Theobroma cacao HOM05D008349 ORTHO05D010116 1.1e-06 56.6 60 50.0
Eucgr.B03753 Eucalyptus grandis HOM05D008349 ORTHO05D010116 1.4e-06 56.2 80 47.5
Cfa009902 Carpinus fangiana HOM05D008349 ORTHO05D010116 1.8e-06 55.8 90 43.3
CANSAT64G0841 Cannabis sativa HOM05D008349 ORTHO05D010116 2.4e-06 55.5 78 44.9
Gohir.D08G020701 Gossypium hirsutum HOM05D040658 ORTHO05D010116 2.4e-06 55.5 65 47.7
COL.COLO4_23432 Corchorus olitorius HOM05D008349 ORTHO05D010116 3.1e-06 55.1 44 54.5
Ciclev10013196m.g Citrus clementina HOM05D008349 ORTHO05D010116 6.9e-06 53.9 83 44.6
Gohir.A08G010450 Gossypium hirsutum HOM05D040658 ORTHO05D010116 6.9e-06 53.9 47 55.3


User provided reference genes

Program Settings