Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 9.4e-34 146.4 78 100.0
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 2.1e-33 145.2 78 98.7
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 1.4e-29 132.5 78 93.6
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.0e-27 126.3 78 91.0
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 5.5e-26 120.6 78 85.9
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 1.0e-24 116.3 76 80.3
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 3.0e-24 114.8 78 80.8
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 8.8e-24 113.2 79 78.5
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 1.2e-23 112.8 76 80.3
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.6e-23 111.7 72 83.3
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 3.4e-23 111.3 78 80.8
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 3.4e-23 111.3 76 80.3
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 3.4e-23 111.3 72 81.9
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 4.4e-23 110.9 68 83.8
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 5.7e-23 110.5 76 78.9
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 5.7e-23 110.5 73 78.1
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 5.7e-23 110.5 72 80.6
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 7.5e-23 110.2 70 80.0
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 9.8e-23 109.8 74 79.7
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.3e-22 109.4 72 80.6
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 1.7e-22 109.0 76 76.3
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 1.7e-22 109.0 78 78.2
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 2.2e-22 108.6 78 76.9
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 2.2e-22 108.6 68 83.8
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 3.7e-22 107.8 73 76.7
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 3.7e-22 107.8 77 77.9
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 3.7e-22 107.8 78 76.9
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 3.7e-22 107.8 73 82.2
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 3.7e-22 107.8 73 82.2
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 3.7e-22 107.8 72 80.6
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 3.7e-22 107.8 78 75.6
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 4.9e-22 107.5 73 76.7
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 4.9e-22 107.5 76 72.4
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 6.3e-22 107.1 73 76.7
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 6.3e-22 107.1 67 82.1
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 8.3e-22 106.7 76 76.3
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.1e-21 106.3 72 77.8
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.1e-21 106.3 77 76.6
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.1e-21 106.3 77 76.6
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 1.1e-21 106.3 78 74.4
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 1.4e-21 105.9 69 79.7
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 1.4e-21 105.9 69 79.7
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 1.4e-21 105.9 69 78.3
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 1.8e-21 105.5 72 72.2
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 1.8e-21 105.5 67 83.6
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 1.8e-21 105.5 69 79.7
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 2.4e-21 105.1 56 91.1
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 2.4e-21 105.1 75 77.3
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.4e-21 105.1 74 74.3
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 2.4e-21 105.1 69 81.2
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 3.1e-21 104.8 73 78.1
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 4.1e-21 104.4 76 71.1
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 4.1e-21 104.4 76 73.7
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 4.1e-21 104.4 75 78.7
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 4.1e-21 104.4 70 77.1
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 5.4e-21 104.0 66 84.8
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 5.4e-21 104.0 66 84.8
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 5.4e-21 104.0 76 72.4
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 5.4e-21 104.0 65 81.5
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 5.4e-21 104.0 69 76.8
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 7.0e-21 103.6 77 71.4
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 9.1e-21 103.2 56 91.1
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 9.1e-21 103.2 56 91.1
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 1.2e-20 102.8 59 83.1
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 1.2e-20 102.8 74 70.3
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 2.0e-20 102.1 78 73.1
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 2.0e-20 102.1 56 89.3
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.0e-20 102.1 75 76.0
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 2.7e-20 101.7 56 89.3
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.7e-20 101.7 56 89.3
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.7e-20 101.7 56 89.3
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 3.5e-20 101.3 64 73.4
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 3.5e-20 101.3 69 78.3
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 3.5e-20 101.3 67 79.1
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 3.5e-20 101.3 75 74.7
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 3.5e-20 101.3 57 89.5
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 4.5e-20 100.9 74 73.0
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 4.5e-20 100.9 76 77.6
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 4.5e-20 100.9 78 70.5
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 5.9e-20 100.5 56 87.5
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 5.9e-20 100.5 56 85.7
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 1.0e-19 99.8 75 72.0
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 1.3e-19 99.4 69 75.4
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 1.7e-19 99.0 73 69.9
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 1.7e-19 99.0 73 74.0
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 1.7e-19 99.0 72 75.0
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 2.3e-19 98.6 72 72.2
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 2.3e-19 98.6 74 71.6
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 2.3e-19 98.6 72 70.8
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.3e-19 98.6 56 87.5
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.3e-19 98.6 75 73.3
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 2.3e-19 98.6 57 86.0
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 2.9e-19 98.2 56 87.5
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 2.9e-19 98.2 56 87.5
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 2.9e-19 98.2 56 87.5
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 2.9e-19 98.2 74 71.6
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 3.8e-19 97.8 73 71.2
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 5.0e-19 97.4 68 76.5
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 5.0e-19 97.4 72 72.2
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 5.0e-19 97.4 70 75.7
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 5.0e-19 97.4 56 85.7
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 5.0e-19 97.4 56 85.7
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 6.6e-19 97.1 56 85.7
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 6.6e-19 97.1 56 85.7
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 6.6e-19 97.1 56 85.7
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 6.6e-19 97.1 56 85.7
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 6.6e-19 97.1 72 70.8
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 8.6e-19 96.7 56 85.7
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 1.1e-18 96.3 56 83.9
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 1.1e-18 96.3 56 83.9
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 1.1e-18 96.3 56 83.9
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.1e-18 96.3 56 80.4
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.1e-18 96.3 56 80.4
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 1.1e-18 96.3 75 69.3
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 1.5e-18 95.9 56 85.7
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.5e-18 95.9 70 72.9
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.5e-18 95.9 56 80.4
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 1.9e-18 95.5 56 83.9
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 2.5e-18 95.1 56 83.9
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 2.5e-18 95.1 75 72.0
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 3.3e-18 94.7 69 69.6
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 5.5e-18 94.0 82 64.6
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 7.2e-18 93.6 69 68.1
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 1.6e-17 92.4 71 70.4
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 1.6e-17 92.4 75 64.0
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 1.6e-17 92.4 65 69.2
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 2.1e-17 92.0 65 70.8
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 2.1e-17 92.0 71 63.4
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 2.8e-17 91.7 64 70.3
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 4.7e-17 90.9 66 68.2
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 4.7e-17 90.9 65 69.2
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.4e-16 89.4 73 65.8
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 3.0e-16 88.2 72 63.9
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.3e-14 82.8 68 64.7
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.7e-14 82.4 72 63.9
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.7e-14 82.4 72 63.9
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 2.2e-14 82.0 55 70.9
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 3.7e-14 81.3 74 62.2
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 6.3e-14 80.5 56 73.2
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 6.3e-14 80.5 56 73.2
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 4.1e-13 77.8 56 73.2
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 9.2e-13 76.6 52 82.7
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 9.2e-13 76.6 56 66.1
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 2.0e-12 75.5 70 55.7
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 3.5e-12 74.7 38 94.7
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 4.6e-12 74.3 48 75.0
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 7.8e-12 73.6 56 62.5
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 7.8e-12 73.6 56 64.3
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 7.8e-12 73.6 56 67.9
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.0e-11 73.2 56 67.9
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 6.6e-11 70.5 53 69.8
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 1.9e-10 68.9 56 60.7
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 7.3e-10 67.0 66 53.0
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.6e-09 65.9 57 70.2
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 2.6e-07 58.5 30 96.7
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 1.3e-06 56.2 55 50.9
Glyma.03G125300 Glycine max HOM05D004624 ORTHO05D005357 1.3e-06 56.2 35 77.1


User provided reference genes

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