Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019970 Carpinus fangiana HOM05D000130 ORTHO05D019427 1.1e-34 149.4 74 100.0
Cfa010963 Carpinus fangiana HOM05D000130 ORTHO05D005673 3.3e-28 127.9 69 91.3
Haze_02974 Corylus avellana HOM05D000130 ORTHO05D005673 1.1e-26 122.9 69 87.0
QL04p021627 Quercus lobata HOM05D000130 ORTHO05D005673 8.4e-24 113.2 69 76.8
QL93p0137_0010 Quercus lobata HOM05D000130 ORTHO05D005673 7.1e-23 110.2 69 75.4
QL04p021605 Quercus lobata HOM05D000130 ORTHO05D005673 9.3e-23 109.8 69 75.4
MELO3C011389.2 Cucumis melo HOM05D000130 ORTHO05D005673 1.6e-22 109.0 69 76.8
Duzib114G0468 Durio zibethinus HOM05D000130 ORTHO05D005673 2.1e-22 108.6 69 75.4
RcHm_v2.0_Chr1g0327901 Rosa chinensis HOM05D000130 ORTHO05D005673 2.7e-22 108.2 69 75.4
ClCG08G010720 Citrullus lanatus HOM05D000130 ORTHO05D005673 4.6e-22 107.5 69 75.4
Sabra01G0023100 Salix brachista HOM05D000130 ORTHO05D005673 4.6e-22 107.5 69 72.5
DCAR_006409 Daucus carota HOM05D000130 ORTHO05D005673 6.0e-22 107.1 69 71.0
DCAR_006410 Daucus carota HOM05D000130 ORTHO05D005673 6.0e-22 107.1 69 68.1
Dinv31999 Davidia involucrata HOM05D000130 ORTHO05D005673 6.0e-22 107.1 69 69.6
Potri.001G032400 Populus trichocarpa HOM05D000130 ORTHO05D005673 6.0e-22 107.1 69 72.5
Rhsim07G0071400 Rhododendron simsii HOM05D000130 ORTHO05D005673 7.8e-22 106.7 69 71.0
RcHm_v2.0_Chr1g0327821 Rosa chinensis HOM05D000130 ORTHO05D005673 7.8e-22 106.7 69 71.0
Atru.chr12.1253 Acer truncatum HOM05D000130 ORTHO05D005673 1.0e-21 106.3 69 71.0
Gohir.A06G174100 Gossypium hirsutum HOM05D000130 ORTHO05D005673 1.3e-21 105.9 69 71.0
Manes.11G008300 Manihot esculenta HOM05D000130 ORTHO05D005673 1.3e-21 105.9 69 72.5
Potri.003G192600 Populus trichocarpa HOM05D000130 ORTHO05D005673 3.0e-21 104.8 69 69.6
Potri.003G192650 Populus trichocarpa HOM05D000130 ORTHO05D005673 3.9e-21 104.4 69 69.6
VMungo1127G0236 Vigna mungo HOM05D000130 ORTHO05D005673 3.9e-21 104.4 69 72.5
Prupe.2G045000 Prunus persica HOM05D000130 ORTHO05D005673 6.6e-21 103.6 69 73.9
GSVIVG01036591001 Vitis vinifera HOM05D000130 ORTHO05D005673 8.7e-21 103.2 69 68.1
CiPaw.13G016600 Carya illinoinensis HOM05D000130 ORTHO05D005673 1.1e-20 102.8 69 72.5
Gorai.010G215600 Gossypium raimondii HOM05D000130 ORTHO05D005673 1.1e-20 102.8 69 68.1
Lj3g0015864 Lotus japonicus HOM05D000130 ORTHO05D005673 1.5e-20 102.4 69 72.5
PGR031G0016 Punica granatum HOM05D000130 ORTHO05D005673 1.5e-20 102.4 69 68.1
Glyma.06G310100 Glycine max HOM05D000130 ORTHO05D005673 1.9e-20 102.1 69 71.0
MD07G1043400 Malus domestica HOM05D000130 ORTHO05D005673 1.9e-20 102.1 69 71.0
Medtr3g012440 Medicago truncatula HOM05D000130 ORTHO05D005673 2.5e-20 101.7 69 71.0
CsaV3_6G035820 Cucumis sativus L. HOM05D000130 ORTHO05D005673 3.3e-20 101.3 69 69.6
FvH4_7g04040 Fragaria vesca HOM05D000130 ORTHO05D005673 3.3e-20 101.3 69 68.1
FAN06G2918 Fragaria x ananassa HOM05D000130 ORTHO05D005673 3.3e-20 101.3 69 68.1
vmacro13775 Vaccinium macrocarpon HOM05D000130 ORTHO05D005673 3.3e-20 101.3 69 68.1
MD02G1275900 Malus domestica HOM05D000130 ORTHO05D005673 4.3e-20 100.9 69 69.6
Gohir.D06G184200 Gossypium hirsutum HOM05D000130 ORTHO05D005673 5.6e-20 100.5 69 66.7
Nn001s41350 Nelumbo nucifera HOM05D000130 ORTHO05D005673 5.6e-20 100.5 69 69.6
RcHm_v2.0_Chr1g0327881 Rosa chinensis HOM05D000130 ORTHO05D005673 5.6e-20 100.5 69 68.1
COL.COLO4_38386 Corchorus olitorius HOM05D000130 ORTHO05D005673 7.3e-20 100.1 69 68.1
Duzib106G1506 Durio zibethinus HOM05D000130 ORTHO05D005673 7.3e-20 100.1 69 66.7
FvH4_7g04070 Fragaria vesca HOM05D000130 ORTHO05D005673 7.3e-20 100.1 69 71.0
FAN01G2579 Fragaria x ananassa HOM05D000130 ORTHO05D005673 7.3e-20 100.1 69 71.0
FAN03G1948 Fragaria x ananassa HOM05D000130 ORTHO05D005673 7.3e-20 100.1 69 71.0
FAN06G2035 Fragaria x ananassa HOM05D000130 ORTHO05D005673 7.3e-20 100.1 69 71.0
Lj3g0007425 Lotus japonicus HOM05D000130 ORTHO05D005673 7.3e-20 100.1 69 71.0
MD02G1276600 Malus domestica HOM05D000130 ORTHO05D005673 7.3e-20 100.1 69 69.6
Oeu014624.1 Olea europaea HOM05D000130 ORTHO05D005673 7.3e-20 100.1 69 68.1
VMungo1080G1129 Vigna mungo HOM05D000130 ORTHO05D005673 7.3e-20 100.1 69 71.0
Prupe.2G044700 Prunus persica HOM05D000130 ORTHO05D005673 9.6e-20 99.8 69 69.6
DCAR_006408 Daucus carota HOM05D000130 ORTHO05D005673 1.6e-19 99.0 69 63.8
MD02G1275600 Malus domestica HOM05D000130 ORTHO05D019427 1.6e-19 99.0 69 66.7
Hma1.2p1_0233F.1_g098340 Hydrangea macrophylla HOM05D000130 ORTHO05D005673 2.1e-19 98.6 69 65.2
Thecc.10G140100 Theobroma cacao HOM05D000130 ORTHO05D005673 2.1e-19 98.6 69 68.1
AUR62032575 Chenopodium quinoa HOM05D000130 ORTHO05D005673 2.8e-19 98.2 69 66.7
Glyma.13G189800 Glycine max HOM05D000130 ORTHO05D005673 2.8e-19 98.2 69 68.1
Prupe.2G045300 Prunus persica HOM05D000130 ORTHO05D005673 2.8e-19 98.2 69 68.1
Rhsim07G0071500 Rhododendron simsii HOM05D000130 ORTHO05D005673 2.8e-19 98.2 69 68.1
Sed0009529 Sechium edule HOM05D000130 ORTHO05D005673 3.6e-19 97.8 69 68.1
TPR.G9965 Trifolium pratense HOM05D000130 ORTHO05D005673 3.6e-19 97.8 69 66.7
TAR633G0891 Trochodendron aralioides HOM05D000130 ORTHO05D005673 3.6e-19 97.8 69 68.1
GSVIVG01025780001 Vitis vinifera HOM05D000130 ORTHO05D005673 3.6e-19 97.8 69 65.2
MSTRG.20496 Avicennia marina HOM05D000130 ORTHO05D005673 4.8e-19 97.4 70 65.7
Nn1g07739 Nelumbo nucifera HOM05D000130 ORTHO05D005673 4.8e-19 97.4 69 65.2
Phvul.011G197000 Phaseolus vulgaris HOM05D000130 ORTHO05D005673 4.8e-19 97.4 69 66.7
CANSAT56G0968 Cannabis sativa HOM05D000130 ORTHO05D005673 6.2e-19 97.1 69 60.9
Phvul.005G016400 Phaseolus vulgaris HOM05D000130 ORTHO05D005673 6.2e-19 97.1 69 66.7
AUR62031693 Chenopodium quinoa HOM05D000130 ORTHO05D005673 1.1e-18 96.3 69 65.2
Ca_14205_v3 Cicer arietinum L. HOM05D000130 ORTHO05D005673 1.4e-18 95.9 69 65.2
Nitab4.5_0002719g0120 Nicotiana tabacum HOM05D000130 ORTHO05D005673 1.4e-18 95.9 69 66.7
MBI19_g02321_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D005673 1.8e-18 95.5 69 65.2
MD02G1276300 Malus domestica HOM05D000130 ORTHO05D005673 1.8e-18 95.5 69 65.2
Sabra03G0143500 Salix brachista HOM05D000130 ORTHO05D005673 1.8e-18 95.5 69 63.8
EL10Ac2g02731 Beta vulgaris HOM05D000130 ORTHO05D005673 2.4e-18 95.1 69 62.3
Lalb_Chr01g0007461 Lupinus albus HOM05D000130 ORTHO05D005673 2.4e-18 95.1 69 65.2
Migut.B01179 Erythranthe guttata HOM05D000130 ORTHO05D005673 3.1e-18 94.7 69 65.2
MBI13_g05464_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D005673 3.1e-18 94.7 69 65.2
Nitab4.5_0004596g0010 Nicotiana tabacum HOM05D000130 ORTHO05D005673 4.0e-18 94.4 69 65.2
Psat5g223920 Pisum sativum HOM05D000130 ORTHO05D005673 4.0e-18 94.4 69 63.8
CAN.G954.27 Capsicum annuum HOM05D000130 ORTHO05D005673 5.3e-18 94.0 69 63.8
Cpa.g.sc3370.1 Carica papaya HOM05D000130 ORTHO05D005673 5.3e-18 94.0 71 69.0
Lj9A633T57 Lonicera japonica HOM05D000130 ORTHO05D005673 5.3e-18 94.0 69 65.2
Nitab4.5_0001236g0010 Nicotiana tabacum HOM05D000130 ORTHO05D005673 6.9e-18 93.6 69 63.8
PSO063G7155 Papaver somniferum HOM05D000130 ORTHO05D005673 6.9e-18 93.6 69 62.3
Ciclev10001722m.g Citrus clementina HOM05D000130 ORTHO05D005673 9.0e-18 93.2 69 65.2
PSO017G2837 Papaver somniferum HOM05D000130 ORTHO05D005673 2.0e-17 92.0 69 60.9
Thecc.10G139500 Theobroma cacao HOM05D000130 ORTHO05D005673 3.4e-17 91.3 61 70.5
TAR623G0855 Trochodendron aralioides HOM05D000130 ORTHO05D005673 3.4e-17 91.3 69 65.2
Nitab4.5_0010392g0010 Nicotiana tabacum HOM05D000130 ORTHO05D005673 4.5e-17 90.9 69 62.3
Nitab4.5_0009058g0010 Nicotiana tabacum HOM05D000130 ORTHO05D005673 5.8e-17 90.5 69 63.8
Sc11g0006240 Simmondsia chinensis HOM05D000130 ORTHO05D005673 5.8e-17 90.5 69 60.9
PGSC0003DMG400021128 Solanum tuberosum HOM05D000130 ORTHO05D005673 7.6e-17 90.1 69 60.9
Solyc02g069800.1 Solanum lycopersicum HOM05D000130 ORTHO05D005673 9.9e-17 89.7 69 60.9
Sopen02g018960 Solanum pennellii HOM05D000130 ORTHO05D005673 9.9e-17 89.7 69 60.9
Cc07_g16100 Coffea canephora HOM05D000130 ORTHO05D005673 2.2e-16 88.6 70 62.9
Dinv02682 Davidia involucrata HOM05D000130 ORTHO05D005673 2.2e-16 88.6 69 65.2
Aqoxy7G01817 Aquilegia oxysepala HOM05D000130 ORTHO05D005673 2.9e-16 88.2 69 59.4
QL02p088669 Quercus lobata HOM05D000130 ORTHO05D005673 2.9e-16 88.2 69 60.9
TWI63G0943 Tripterygium wilfordii HOM05D000130 ORTHO05D005673 2.9e-16 88.2 71 63.4
CDE07G1126 Ceratophyllum demersum HOM05D000130 ORTHO05D005673 3.8e-16 87.8 69 55.1
CSS0011929 Camellia sinensis var. sinensis HOM05D000130 ORTHO05D005673 6.4e-16 87.0 69 58.0
Dinv20746 Davidia involucrata HOM05D000130 ORTHO05D005673 6.4e-16 87.0 69 58.0
MBI13_g20756_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D005673 6.4e-16 87.0 69 59.4
Peaxi162Scf01312g00048 Petunia axillaris HOM05D000130 ORTHO05D005673 6.4e-16 87.0 69 58.0
ECA234G3523 Erigeron canadensis HOM05D000130 ORTHO05D005673 8.4e-16 86.7 69 62.3
MBI19_g02323_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D005673 1.1e-15 86.3 69 60.9
SGA_v2.0_scaffold96G29077 Striga asiatica HOM05D000130 ORTHO05D005673 1.1e-15 86.3 69 60.9
RcHm_v2.0_Chr1g0327851 Rosa chinensis HOM05D000130 ORTHO05D005673 1.4e-15 85.9 72 59.7
SalBow5G0800 Salvia bowleyana HOM05D000130 ORTHO05D005673 1.9e-15 85.5 69 59.4
Sabra16G0034900 Salix brachista HOM05D000130 ORTHO05D005673 2.4e-15 85.1 69 60.9
MBI16_g16464_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D005673 3.2e-15 84.7 69 56.5
SEGI_39324 Sequoiadendron giganteum HOM05D000130 ORTHO05D005673 3.2e-15 84.7 68 61.8
RcHm_v2.0_Chr1g0327831 Rosa chinensis HOM05D000130 ORTHO05D019427 4.2e-15 84.3 69 58.0
Thecc.10G139900 Theobroma cacao HOM05D000130 ORTHO05D005673 4.2e-15 84.3 61 65.6
Zm00001eb287940 Zea mays HOM05D000130 ORTHO05D005673 4.2e-15 84.3 69 56.5
Ah.12g064820 Amaranthus hybridus HOM05D000130 ORTHO05D005673 5.4e-15 84.0 69 55.1
Zm00001eb349490 Zea mays HOM05D000130 ORTHO05D005673 9.3e-15 83.2 69 55.1
Atru.chr1.1305 Acer truncatum HOM05D000130 ORTHO05D005673 1.2e-14 82.8 69 58.0
TWI74G0963 Tripterygium wilfordii HOM05D000130 ORTHO05D005673 1.6e-14 82.4 69 55.1
FvH4_7g04030 Fragaria vesca HOM05D000721 ORTHO05D005673 2.1e-14 82.0 72 54.2
FAN06G1401 Fragaria x ananassa HOM05D000130 ORTHO05D005673 2.1e-14 82.0 72 54.2
MBI16_g16461_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D019427 2.1e-14 82.0 69 55.1
HanXRQChr16g0525291 Helianthus annuus HOM05D000130 ORTHO05D005673 3.5e-14 81.3 73 54.8
Os05g0410200 Oryza sativa ssp. japonica HOM05D000130 ORTHO05D005673 3.5e-14 81.3 69 53.6
HanXRQChr09g0252101 Helianthus annuus HOM05D000130 ORTHO05D005673 4.6e-14 80.9 69 60.9
Lj1P1083T22 Lonicera japonica HOM05D000130 ORTHO05D005673 1.3e-13 79.3 69 56.5
Lsat_1_v5_gn_4_31120 Lactuca sativa HOM05D000130 ORTHO05D005673 2.3e-13 78.6 69 59.4
Lsat_1_v5_gn_4_31761 Lactuca sativa HOM05D000130 ORTHO05D005673 2.3e-13 78.6 69 59.4
Actinidia06212 Actinidia chinensis HOM05D000130 ORTHO05D005673 5.1e-13 77.4 61 62.3
Lj2P411T16 Lonicera japonica HOM05D000130 ORTHO05D005673 8.7e-13 76.6 69 50.7
MBI13_g15088_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D005673 1.1e-12 76.3 55 63.6
CSS0031361 Camellia sinensis var. sinensis HOM05D000130 ORTHO05D005673 2.5e-12 75.1 69 56.5
Lsat_1_v5_gn_1_64940 Lactuca sativa HOM05D000130 ORTHO05D005673 4.3e-12 74.3 69 53.6
GSVIVG01025797001 Vitis vinifera HOM05D000130 ORTHO05D005673 4.3e-12 74.3 63 60.3
Potri.016G031500 Populus trichocarpa HOM05D000130 ORTHO05D005673 5.6e-12 73.9 69 52.2
Lsat_1_v5_gn_4_31100 Lactuca sativa HOM05D000130 ORTHO05D005673 9.6e-12 73.2 67 55.2
CDE08G1041 Ceratophyllum demersum HOM05D000130 ORTHO05D005673 1.3e-11 72.8 57 57.9
Sabra16G0034800 Salix brachista HOM05D000130 ORTHO05D005673 1.3e-11 72.8 69 50.7
TPR.G8795 Trifolium pratense HOM05D000130 ORTHO05D019427 1.6e-11 72.4 49 67.3
Dinv36117 Davidia involucrata HOM05D000130 ORTHO05D005673 1.4e-10 69.3 69 52.2
SEGI_29288 Sequoiadendron giganteum HOM05D000130 ORTHO05D005673 1.8e-10 68.9 68 50.0
Atru.chr12.1252 Acer truncatum HOM05D000130 ORTHO05D005673 3.4e-09 64.7 44 68.2
Hma1.2p1_1342F.1_g277010 Hydrangea macrophylla HOM05D000130 ORTHO05D005673 3.4e-09 64.7 41 68.3
ATR0307G019 Amborella trichopoda HOM05D000130 ORTHO05D005673 7.6e-09 63.5 70 47.1
Thecc.10G140200 Theobroma cacao HOM05D000130 ORTHO05D005673 6.5e-08 60.5 47 59.6
SEGI_39464 Sequoiadendron giganteum HOM05D000130 ORTHO05D005673 5.5e-07 57.4 68 42.6
Os12g0135500 Oryza sativa ssp. japonica HOM05D000130 ORTHO05D005673 1.2e-06 56.2 68 44.1
Zm00001eb300640 Zea mays HOM05D000721 ORTHO05D002599 1.2e-06 56.2 70 35.7
SEGI_13310 Sequoiadendron giganteum HOM05D000130 ORTHO05D003765 1.6e-06 55.8 66 40.9
Zm00001eb287920 Zea mays HOM05D000130 ORTHO05D005673 1.6e-06 55.8 53 47.2
Os11g0138900 Oryza sativa ssp. japonica HOM05D000130 ORTHO05D005673 2.7e-06 55.1 68 44.1
CiPaw.10G043300 Carya illinoinensis HOM05D000130 ORTHO05D005673 4.6e-06 54.3 70 45.7
Lj1g0001601 Lotus japonicus HOM05D000130 ORTHO05D002599 4.6e-06 54.3 68 32.4
Sed0018609 Sechium edule HOM05D000130 ORTHO05D003765 6.0e-06 53.9 67 35.8
SalBow5G1300 Salvia bowleyana HOM05D000130 ORTHO05D005673 7.9e-06 53.5 34 70.6


User provided reference genes

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