Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019956 Carpinus fangiana HOM05D004548 ORTHO05D005402 2.7e-29 131.3 68 100.0
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 5.3e-17 90.5 49 93.9
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 1.3e-15 85.9 49 87.8
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 4.4e-11 70.9 50 76.0
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 7.5e-11 70.1 45 77.8
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 7.5e-11 70.1 45 77.8
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 7.5e-11 70.1 45 77.8
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 4.8e-10 67.4 45 73.3
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 6.3e-10 67.0 49 63.3
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 6.3e-10 67.0 49 65.3
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 6.3e-10 67.0 50 68.0
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 1.4e-09 65.9 49 67.3
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 3.1e-09 64.7 43 69.8
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 4.1e-09 64.3 45 68.9
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 4.1e-09 64.3 43 67.4
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 5.4e-09 63.9 49 59.2
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 7.0e-09 63.5 43 76.7
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 9.1e-09 63.2 43 76.7
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.6e-08 62.4 45 73.3
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 1.6e-08 62.4 49 63.3
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 1.6e-08 62.4 48 68.8
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 1.6e-08 62.4 47 63.8
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 2.0e-08 62.0 49 65.3
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 2.0e-08 62.0 49 65.3
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 2.7e-08 61.6 44 75.0
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 3.5e-08 61.2 43 74.4
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 4.5e-08 60.8 45 71.1
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 4.5e-08 60.8 47 66.0
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 5.9e-08 60.5 43 65.1
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 5.9e-08 60.5 46 58.7
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 7.7e-08 60.1 50 64.0
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 7.7e-08 60.1 43 67.4
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 7.7e-08 60.1 44 65.9
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 1.3e-07 59.3 53 62.3
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 2.3e-07 58.5 49 55.1
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 2.3e-07 58.5 45 62.2
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 2.3e-07 58.5 43 69.8
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 2.3e-07 58.5 44 70.5
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 2.9e-07 58.2 49 59.2
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 2.9e-07 58.2 49 59.2
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 2.9e-07 58.2 43 67.4
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 2.9e-07 58.2 43 69.8
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 3.8e-07 57.8 48 60.4
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 3.8e-07 57.8 48 60.4
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 3.8e-07 57.8 48 60.4
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 3.8e-07 57.8 43 69.8
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 3.8e-07 57.8 50 56.0
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 3.8e-07 57.8 45 64.4
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 5.0e-07 57.4 43 69.8
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 6.6e-07 57.0 49 57.1
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 6.6e-07 57.0 49 57.1
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 6.6e-07 57.0 49 57.1
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 6.6e-07 57.0 43 67.4
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 8.6e-07 56.6 43 69.8
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 8.6e-07 56.6 43 69.8
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 8.6e-07 56.6 48 54.2
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 8.6e-07 56.6 45 62.2
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 1.1e-06 56.2 43 62.8
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 1.1e-06 56.2 43 65.1
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 1.1e-06 56.2 43 65.1
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 1.5e-06 55.8 43 65.1
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 1.5e-06 55.8 43 67.4
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 1.9e-06 55.5 45 64.4
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 1.9e-06 55.5 43 65.1
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 1.9e-06 55.5 48 56.2
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 2.5e-06 55.1 49 61.2
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 2.5e-06 55.1 50 58.0
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 2.5e-06 55.1 45 55.6
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 2.5e-06 55.1 43 65.1
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 2.5e-06 55.1 43 65.1
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 2.5e-06 55.1 49 59.2
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 3.3e-06 54.7 39 66.7
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 3.3e-06 54.7 39 66.7
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 3.3e-06 54.7 39 66.7
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 3.3e-06 54.7 39 69.2
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 4.2e-06 54.3 43 67.4
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 4.2e-06 54.3 43 62.8
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 4.2e-06 54.3 45 62.2
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 4.2e-06 54.3 45 62.2
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 4.2e-06 54.3 45 55.6
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 4.2e-06 54.3 45 68.9
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 4.2e-06 54.3 45 60.0
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 5.5e-06 53.9 45 64.4
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 5.5e-06 53.9 45 60.0
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 5.5e-06 53.9 53 52.8
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 5.5e-06 53.9 53 52.8
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 7.2e-06 53.5 48 54.2
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 7.2e-06 53.5 50 54.0
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 9.5e-06 53.1 49 55.1


User provided reference genes

Program Settings