Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 1.4e-125 453.0 229 100.0
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 9.3e-122 440.3 229 96.5
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.7e-83 313.2 238 73.9
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.1e-77 293.9 216 74.5
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 2.0e-71 273.1 247 64.0
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 1.6e-68 263.5 247 64.0
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 7.7e-68 261.2 257 63.0
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 3.8e-67 258.8 261 60.2
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 2.7e-65 252.7 234 63.7
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 6.1e-65 251.5 258 60.5
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 6.8e-64 248.1 250 60.4
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 8.8e-64 247.7 238 64.3
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 1.2e-63 247.3 243 61.7
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.5e-63 246.9 245 61.6
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 2.6e-63 246.1 233 58.4
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 5.7e-63 245.0 264 57.6
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 7.5e-63 244.6 260 56.2
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 2.8e-62 242.7 241 62.2
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 6.3e-62 241.5 236 63.1
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 1.1e-61 240.7 232 63.4
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 5.3e-61 238.4 240 61.7
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 2.7e-60 236.1 231 58.9
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 7.7e-60 234.6 232 60.8
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 7.7e-60 234.6 242 57.0
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 1.0e-59 234.2 251 55.8
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 1.0e-59 234.2 233 60.1
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 6.5e-59 231.5 261 58.2
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 6.5e-59 231.5 246 58.9
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 3.2e-58 229.2 238 57.6
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 5.5e-58 228.4 238 57.6
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 9.4e-58 227.6 244 56.6
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 1.2e-57 227.3 253 59.7
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 2.1e-57 226.5 242 57.0
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 1.8e-56 223.4 252 59.1
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 2.3e-56 223.0 231 56.3
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 4.0e-56 222.2 245 59.6
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 9.8e-55 217.6 231 58.0
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 1.7e-54 216.9 243 55.6
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 1.7e-54 216.9 244 56.1
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 3.1e-53 212.6 260 53.8
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 9.1e-53 211.1 256 53.1
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 1.6e-52 210.3 239 54.8
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 5.9e-52 208.4 171 70.2
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 5.9e-52 208.4 228 55.7
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.3e-51 207.2 256 52.0
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 1.7e-51 206.8 256 53.1
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 1.9e-50 203.4 241 51.5
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 1.9e-50 203.4 242 50.8
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.8e-48 196.8 255 51.8
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.8e-48 196.8 232 54.7
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 5.2e-48 195.3 236 50.4
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.3e-46 190.7 232 53.9
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 8.3e-46 188.0 278 45.7
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.4e-45 187.2 235 52.8
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 1.8e-45 186.8 227 52.9
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.9e-43 179.1 233 52.8
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 8.6e-43 177.9 228 51.8
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 1.9e-42 176.8 231 50.2
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 2.5e-42 176.4 245 46.5
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.3e-42 176.0 231 50.2
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 4.3e-42 175.6 233 52.8
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 5.6e-42 175.3 251 49.0
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 5.6e-42 175.3 231 50.6
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.2e-41 174.1 233 52.8
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 1.6e-41 173.7 249 45.8
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 1.6e-41 173.7 249 45.8
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 2.8e-41 172.9 224 49.6
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 3.6e-41 172.6 231 46.3
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 8.0e-41 171.4 250 46.0
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 8.0e-41 171.4 239 49.8
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.0e-40 171.0 229 48.5
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 1.4e-40 170.6 250 45.6
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 1.4e-40 170.6 250 45.6
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 2.3e-40 169.9 249 48.6
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 4.0e-40 169.1 246 46.3
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 8.9e-40 167.9 228 47.4
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 2.0e-39 166.8 262 43.9
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 2.0e-39 166.8 246 46.7
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 2.0e-39 166.8 224 47.3
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 2.6e-39 166.4 225 50.2
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 3.4e-39 166.0 251 48.2
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 5.8e-39 165.2 228 46.9
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 9.8e-39 164.5 246 45.5
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.7e-38 163.7 230 48.3
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 2.2e-38 163.3 239 47.7
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 4.9e-38 162.2 235 48.9
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 8.3e-38 161.4 247 43.7
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 2.4e-37 159.8 240 48.3
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 3.2e-37 159.5 234 45.3
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 5.4e-37 158.7 244 46.7
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 7.0e-37 158.3 244 46.7
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 1.2e-36 157.5 243 45.7
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 1.6e-36 157.1 246 44.7
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 2.0e-36 156.8 248 46.0
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 2.7e-36 156.4 254 44.9
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 3.5e-36 156.0 179 61.5
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 7.8e-36 154.8 250 44.4
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 1.0e-35 154.5 269 44.6
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.0e-35 154.5 248 46.4
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 3.0e-35 152.9 235 44.3
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 3.9e-35 152.5 234 45.3
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 8.6e-35 151.4 239 43.1
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 8.6e-35 151.4 236 47.9
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 1.9e-34 150.2 260 43.8
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 3.3e-34 149.4 240 43.3
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 3.3e-34 149.4 240 43.3
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 3.3e-34 149.4 240 43.3
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 9.5e-34 147.9 245 42.4
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 9.5e-34 147.9 242 47.5
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 1.2e-33 147.5 234 48.7
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 1.6e-33 147.1 242 43.8
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 2.1e-33 146.7 236 42.8
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 2.8e-33 146.4 259 40.5
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 1.1e-32 144.4 235 43.0
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.1e-32 144.4 230 42.6
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 1.4e-32 144.1 235 43.0
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 1.4e-32 144.1 235 43.0
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 3.1e-32 142.9 256 41.4
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 5.2e-32 142.1 252 43.3
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 6.8e-32 141.7 243 44.4
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 8.9e-32 141.4 250 41.6
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 8.9e-32 141.4 241 42.3
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 1.3e-30 137.5 246 41.9
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 8.3e-30 134.8 188 48.4
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 1.1e-29 134.4 233 43.3
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 1.4e-29 134.0 231 40.7
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 1.9e-29 133.7 245 43.3
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.4e-29 133.3 232 40.5
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.4e-29 133.3 231 40.7
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 1.2e-28 131.0 243 39.5
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 1.2e-28 131.0 168 50.6
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 1.2e-28 131.0 226 44.7
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.6e-28 130.6 246 39.4
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 6.0e-28 128.6 245 37.1
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 1.3e-27 127.5 241 41.1
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 3.0e-27 126.3 215 43.3
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 2.5e-26 123.2 234 42.7
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 5.6e-26 122.1 160 49.4
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 4.7e-25 119.0 178 43.3
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 4.7e-25 119.0 175 44.6
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 1.8e-24 117.1 243 37.0
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 1.2e-23 114.4 238 41.2
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 2.2e-22 110.2 234 40.2
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 1.4e-21 107.5 243 40.7
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.9e-21 107.1 147 50.3
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 3.2e-21 106.3 238 37.0
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.2e-20 104.4 173 42.2
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.3e-19 100.9 146 47.3
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 5.2e-16 89.0 177 40.1
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 1.7e-14 84.0 238 34.0
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.9e-14 83.2 137 47.4
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 2.9e-14 83.2 140 41.4
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 8.4e-14 81.6 167 35.9
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 7.1e-13 78.6 163 38.0
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 9.3e-13 78.2 93 54.8
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 1.9e-10 70.5 130 43.8
Nn1g03499 Nelumbo nucifera HOM05D004369 ORTHO05D004907 3.3e-10 69.7 91 49.5
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 3.3e-10 69.7 228 31.1
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 1.4e-08 64.3 83 48.2
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 6.9e-08 62.0 143 33.6
unitig_744.g24165 Utricularia gibba HOM05D004369 ORTHO05D004907 4.4e-07 59.3 111 39.6
Os07g0686600 Oryza sativa ssp. japonica HOM05D015271 ORTHO05D020944 1.3e-06 57.8 53 54.7
Phvul.006G002700 Phaseolus vulgaris HOM05D001711 ORTHO05D002847 8.4e-06 55.1 126 37.3


User provided reference genes

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