Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.8e-293 1011.1 494 100.0
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 2.3e-250 868.6 486 86.4
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 3.9e-250 867.8 484 88.8
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.2e-230 803.1 474 82.3
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 4.5e-230 801.2 475 80.4
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 2.4e-228 795.4 469 80.8
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 4.2e-228 794.7 472 81.4
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 4.2e-228 794.7 467 81.4
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.2e-227 793.1 467 81.2
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 2.7e-227 792.0 469 82.3
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.5e-227 791.6 474 80.8
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 6.0e-227 790.8 467 80.5
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.0e-226 790.0 476 80.3
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 3.9e-226 788.1 467 80.3
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 5.1e-226 787.7 472 80.7
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.7e-226 787.3 478 78.2
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 8.7e-226 786.9 468 80.6
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-225 786.6 476 78.4
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.5e-225 786.2 467 79.7
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.9e-225 785.8 477 78.0
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 4.3e-225 784.6 463 80.6
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 7.4e-225 783.9 473 79.3
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 7.4e-225 783.9 471 80.3
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 2.1e-224 782.3 469 78.9
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.1e-224 782.3 467 80.3
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 2.1e-224 782.3 471 80.0
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.4e-223 779.6 481 79.8
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 1.4e-223 779.6 469 79.3
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.4e-223 779.6 467 81.2
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 3.1e-223 778.5 471 78.8
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 5.3e-223 777.7 474 78.9
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 6.9e-223 777.3 471 80.3
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 6.9e-223 777.3 481 77.1
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 5.8e-222 774.2 467 79.4
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 7.6e-222 773.9 444 84.5
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 2.5e-220 768.8 474 78.1
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 9.3e-220 766.9 472 78.4
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.1e-217 760.0 476 78.6
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.5e-217 759.6 464 80.6
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 2.5e-217 758.8 477 76.5
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 2.5e-217 758.8 467 77.9
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 1.3e-216 756.5 449 80.8
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 2.1e-216 755.7 472 76.9
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 6.3e-216 754.2 472 76.5
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.8e-215 752.7 474 77.6
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 2.4e-215 752.3 468 77.4
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 3.1e-215 751.9 472 76.3
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 2.0e-214 749.2 465 75.9
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 1.3e-213 746.5 467 77.5
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 2.2e-213 745.7 477 73.6
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 2.2e-213 745.7 453 79.7
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 3.8e-213 745.0 471 77.5
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 2.5e-212 742.3 470 76.6
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 1.2e-211 740.0 472 75.8
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.7e-211 738.8 473 75.3
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 1.3e-210 736.5 475 75.2
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 3.9e-210 734.9 473 76.5
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 3.9e-210 734.9 474 76.6
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 4.3e-209 731.5 446 78.5
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 9.7e-209 730.3 553 66.4
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.6e-208 729.6 440 79.1
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 2.6e-206 722.2 473 74.4
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 3.4e-206 721.8 473 74.2
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.0e-205 720.3 473 74.2
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 1.7e-205 719.5 472 74.8
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 3.8e-205 718.4 470 75.3
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 8.5e-205 717.2 474 74.5
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 6.1e-203 711.1 429 80.2
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 3.9e-202 708.4 475 73.7
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 2.0e-201 706.1 477 73.8
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 2.0e-201 706.1 467 74.9
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 7.4e-201 704.1 469 75.3
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.3e-200 703.4 470 73.2
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 8.2e-200 700.7 467 74.7
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 3.1e-199 698.7 476 73.1
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 6.9e-199 697.6 477 71.3
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 1.5e-198 696.4 467 74.5
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 2.0e-198 696.0 474 73.4
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 7.7e-198 694.1 467 74.1
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 7.7e-198 694.1 474 74.1
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.0e-197 693.7 467 73.9
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 6.5e-197 691.0 465 70.8
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 8.5e-197 690.6 468 72.9
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-196 690.3 474 73.2
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 1.1e-196 690.3 473 73.4
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 2.5e-196 689.1 467 73.7
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 3.2e-196 688.7 474 72.8
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 3.2e-196 688.7 474 72.8
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 5.5e-196 688.0 467 73.4
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 5.5e-196 688.0 474 73.4
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 7.2e-196 687.6 467 73.4
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 3.7e-192 675.2 425 75.8
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 8.2e-192 674.1 409 79.5
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.6e-190 669.1 476 69.7
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.3e-189 666.8 467 72.2
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 1.7e-189 666.4 467 70.0
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 6.5e-189 664.5 494 66.0
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.6e-187 659.8 513 63.4
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.4e-186 656.8 480 70.8
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 9.7e-185 650.6 467 68.3
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 1.3e-184 650.2 411 76.4
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 5.3e-183 644.8 473 66.6
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 7.0e-183 644.4 466 67.0
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 2.7e-182 642.5 521 64.3
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 5.9e-182 641.3 440 73.0
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 3.5e-174 615.5 363 80.2
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 9.5e-172 607.4 481 66.9
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 2.1e-171 606.3 470 66.6
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.4e-167 591.7 350 79.4
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 3.5e-166 589.0 477 61.6
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 4.5e-166 588.6 406 71.4
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 8.6e-165 584.3 361 77.8
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.0e-162 575.9 467 64.5
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 3.5e-158 562.4 510 56.5
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 2.8e-155 552.7 495 58.2
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 2.6e-153 546.2 468 60.5
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.1e-147 526.6 477 59.3
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.3e-136 490.7 476 52.3
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 1.5e-132 477.2 547 47.3
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.8e-131 473.0 466 55.8
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.6e-123 446.0 327 71.9
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.3e-117 427.6 268 75.0
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 1.1e-116 424.5 306 67.6
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 2.6e-113 413.3 276 74.3
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.3e-99 367.9 283 70.3
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.6e-94 350.9 484 43.8
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.2e-86 324.7 199 76.4
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 1.0e-85 321.6 382 45.8
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 5.3e-82 309.3 271 59.0
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 9.7e-76 288.5 492 36.0
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.2e-75 287.3 248 62.1
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 4.7e-70 269.6 272 50.4
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.5e-68 264.6 507 36.3
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.2e-65 255.0 487 37.0
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 6.1e-62 242.7 456 37.3
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-58 231.9 174 67.2
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.6e-57 228.0 181 63.0
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 7.2e-55 219.2 209 54.5
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.8e-53 214.5 288 44.8
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.3e-51 208.4 198 53.0
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.5e-49 200.3 111 82.0
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.9e-48 196.8 111 80.2
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.6e-48 195.7 111 81.1
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 7.3e-47 192.6 197 53.8
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 1.6e-41 174.9 123 65.9
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 2.0e-41 174.5 117 73.5
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.7e-40 171.4 105 77.1
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.5e-39 167.5 111 71.2
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.1e-37 160.6 325 34.2
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 4.6e-33 146.7 92 70.7
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.3e-32 145.2 122 59.0
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 3.3e-31 140.6 104 64.4
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.1e-29 134.0 67 95.5
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 3.5e-25 120.6 125 56.8
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 2.5e-23 114.4 69 78.3
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.9e-18 98.2 58 77.6
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 2.5e-15 87.8 75 62.7
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 1.2e-09 68.9 42 78.6
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 8.7e-08 62.8 45 66.7
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 8.7e-08 62.8 44 70.5
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.1e-07 62.4 49 67.3
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 1.9e-07 61.6 57 54.4
vmacro11217 Vaccinium macrocarpon HOM05D004406 ORTHO05D426987 6.2e-06 56.6 104 35.6


User provided reference genes

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