Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019902 Carpinus fangiana HOM05D006876 ORTHO05D008708 1.2e-118 429.9 214 100.0
Haze_20349 Corylus avellana HOM05D006876 ORTHO05D008708 4.0e-103 378.3 242 82.6
CiPaw.09G161500 Carya illinoinensis HOM05D006876 ORTHO05D008708 2.9e-85 318.9 205 75.1
QL07p015416 Quercus lobata HOM05D006876 ORTHO05D008708 1.0e-82 310.5 211 73.5
Prupe.7G023500 Prunus persica HOM05D006876 ORTHO05D008708 9.7e-81 303.9 220 67.3
Cpa.g.sc33.174 Carica papaya HOM05D006876 ORTHO05D008708 2.6e-78 295.8 213 70.0
Dinv13650 Davidia involucrata HOM05D006876 ORTHO05D008708 1.7e-77 293.1 210 69.0
CsaV3_4G029000 Cucumis sativus L. HOM05D006876 ORTHO05D008708 2.9e-77 292.4 200 69.0
MELO3C019167.2 Cucumis melo HOM05D006876 ORTHO05D008708 3.8e-77 292.0 200 68.5
ClCG04G005040 Citrullus lanatus HOM05D006876 ORTHO05D008708 6.5e-77 291.2 204 68.6
FAN19G1913 Fragaria x ananassa HOM05D006876 ORTHO05D008708 3.2e-76 288.9 202 69.3
Ah.13g077470 Amaranthus hybridus HOM05D006876 ORTHO05D008708 5.5e-76 288.1 196 70.4
CANSAT78G2074 Cannabis sativa HOM05D006876 ORTHO05D008708 9.4e-76 287.3 202 69.8
PGR142G2444 Punica granatum HOM05D006876 ORTHO05D008708 9.4e-76 287.3 203 71.9
Manes.09G001600 Manihot esculenta HOM05D006876 ORTHO05D008708 1.6e-75 286.6 218 63.3
EL10Ac3g07376 Beta vulgaris HOM05D006876 ORTHO05D008708 2.1e-75 286.2 212 68.9
Sed0006068 Sechium edule HOM05D006876 ORTHO05D008708 2.1e-75 286.2 215 63.3
Hund24486 Selenicereus undatus HOM05D006876 ORTHO05D008708 6.1e-75 284.6 209 64.6
RcHm_v2.0_Chr7g0183121 Rosa chinensis HOM05D006876 ORTHO05D008708 1.0e-74 283.9 205 68.8
FAN28G2491 Fragaria x ananassa HOM05D006876 ORTHO05D008708 1.4e-74 283.5 202 67.8
MD12G1111100 Malus domestica HOM05D006876 ORTHO05D008708 1.8e-74 283.1 213 64.8
Thecc.05G117700 Theobroma cacao HOM05D006876 ORTHO05D008708 2.3e-74 282.7 212 65.6
RhsimUnG0021300 Rhododendron simsii HOM05D006876 ORTHO05D008708 8.8e-74 280.8 218 65.6
Potri.006G026300 Populus trichocarpa HOM05D006876 ORTHO05D008708 9.7e-73 277.3 210 64.8
Ciclev10012641m.g Citrus clementina HOM05D006876 ORTHO05D008708 1.3e-72 276.9 222 62.2
TWI53G1364 Tripterygium wilfordii HOM05D006876 ORTHO05D008708 4.8e-72 275.0 207 64.3
Gohir.D13G092600 Gossypium hirsutum HOM05D006876 ORTHO05D008708 6.3e-72 274.6 208 63.9
vmacro07595 Vaccinium macrocarpon HOM05D006876 ORTHO05D008708 6.3e-72 274.6 239 61.1
CSS0024544 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 8.2e-72 274.2 217 63.1
Gohir.A13G086570 Gossypium hirsutum HOM05D006876 ORTHO05D008708 1.4e-71 273.5 208 63.9
THA.LOC104803253 Tarenaya hassleriana HOM05D006876 ORTHO05D008708 1.4e-71 273.5 208 64.9
Peaxi162Scf00003g05358 Petunia axillaris HOM05D006876 ORTHO05D008708 1.8e-71 273.1 212 67.5
GSVIVG01025828001 Vitis vinifera HOM05D006876 ORTHO05D008708 1.8e-71 273.1 203 68.5
MBI19_g10813_MAGBIO Magnolia biondii HOM05D006876 ORTHO05D008708 2.6e-70 269.2 210 61.4
COL.COLO4_21445 Corchorus olitorius HOM05D006876 ORTHO05D008708 4.5e-70 268.5 211 62.1
arahy.Tifrunner.gnm1.ann1.SXUX32 Arachis hypogaea HOM05D006876 ORTHO05D008708 1.7e-69 266.5 207 62.8
Duzib114G0933 Durio zibethinus HOM05D006876 ORTHO05D008708 1.7e-69 266.5 212 63.2
Gorai.010G139600 Gossypium raimondii HOM05D006876 ORTHO05D008708 1.7e-69 266.5 215 62.3
Sabra06G0019500 Salix brachista HOM05D006876 ORTHO05D008708 2.9e-69 265.8 209 63.6
Sc19g0007790 Simmondsia chinensis HOM05D006876 ORTHO05D008708 3.8e-69 265.4 210 64.3
Atru.chr8.919 Acer truncatum HOM05D006876 ORTHO05D008708 5.0e-69 265.0 205 65.4
arahy.Tifrunner.gnm1.ann1.U8TZLL Arachis hypogaea HOM05D006876 ORTHO05D008708 6.5e-69 264.6 207 62.3
AUR62020968 Chenopodium quinoa HOM05D006876 ORTHO05D008708 8.5e-69 264.2 204 65.2
Hund24492 Selenicereus undatus HOM05D006876 ORTHO05D008708 3.2e-68 262.3 196 63.8
Medtr7g088040 Medicago truncatula HOM05D006876 ORTHO05D008708 7.2e-68 261.2 197 65.0
PSO384G4569 Papaver somniferum HOM05D006876 ORTHO05D008708 7.2e-68 261.2 204 62.3
Hma1.2p1_0694F.1_g204340 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 9.4e-68 260.8 228 58.3
PSO339G4949 Papaver somniferum HOM05D006876 ORTHO05D008708 9.4e-68 260.8 211 61.6
Sopen10g028620 Solanum pennellii HOM05D006876 ORTHO05D008708 1.6e-67 260.0 211 64.0
Solyc10g076930.2 Solanum lycopersicum HOM05D006876 ORTHO05D008708 1.0e-66 257.3 211 64.0
Lalb_Chr24g0400801 Lupinus albus HOM05D006876 ORTHO05D008708 2.3e-66 256.1 204 60.3
PGSC0003DMG400007191 Solanum tuberosum HOM05D006876 ORTHO05D008708 5.2e-66 255.0 213 63.4
Nitab4.5_0000123g0090 Nicotiana tabacum HOM05D006876 ORTHO05D008708 1.1e-65 253.8 214 63.1
Eucgr.K01704 Eucalyptus grandis HOM05D006876 ORTHO05D008708 2.6e-65 252.7 201 62.7
Lj1g0024709 Lotus japonicus HOM05D006876 ORTHO05D008708 2.6e-65 252.7 199 62.3
Nitab4.5_0002131g0070 Nicotiana tabacum HOM05D006876 ORTHO05D008708 5.7e-65 251.5 219 62.1
Aa31LG10G11670 Aethionema arabicum HOM05D006876 ORTHO05D008708 1.7e-64 250.0 201 63.2
Cc06_g21190 Coffea canephora HOM05D006876 ORTHO05D008708 4.8e-64 248.4 205 61.5
Lsat_1_v5_gn_6_24200 Lactuca sativa HOM05D006876 ORTHO05D008708 4.8e-64 248.4 204 58.3
Nn7g37203 Nelumbo nucifera HOM05D006876 ORTHO05D008708 8.2e-64 247.7 180 67.8
SGA_v2.0_scaffold123G33492 Striga asiatica HOM05D001269 ORTHO05D001083 5.3e-63 245.0 216 57.9
MSTRG.10760 Avicennia marina HOM05D006876 ORTHO05D008708 9.1e-63 244.2 215 58.6
Sp5g05770 Schrenkiella parvula HOM05D006876 ORTHO05D008708 1.6e-62 243.4 207 59.9
Carub.0005s2355 Capsella rubella HOM05D006876 ORTHO05D008708 2.0e-62 243.0 207 59.4
Thhalv10006232m.g Eutrema salsugineum HOM05D006876 ORTHO05D008708 2.7e-62 242.7 206 61.2
AL5G38200 Arabidopsis lyrata HOM05D006876 ORTHO05D008708 3.5e-62 242.3 206 60.2
CARHR166970 Cardamine hirsuta HOM05D006876 ORTHO05D008708 5.9e-62 241.5 207 62.3
TAR623G1567 Trochodendron aralioides HOM05D006876 ORTHO05D008708 5.9e-62 241.5 155 70.3
A09p49640 Brassica napus HOM05D006876 ORTHO05D008708 1.0e-61 240.7 208 58.2
BraA09t40417Z Brassica rapa HOM05D006876 ORTHO05D008708 1.0e-61 240.7 208 58.2
BcaC07g40117 Brassica carinata HOM05D006876 ORTHO05D008708 1.7e-61 240.0 203 59.6
SalBow1G4764 Salvia bowleyana HOM05D006876 ORTHO05D008708 2.9e-61 239.2 214 57.5
AT3G56820 Arabidopsis thaliana HOM05D006876 ORTHO05D008708 5.0e-61 238.4 208 59.6
Migut.K00190 Erythranthe guttata HOM05D006876 ORTHO05D008708 5.0e-61 238.4 200 59.0
BcaC07g39992 Brassica carinata HOM05D006876 ORTHO05D008708 6.5e-61 238.0 201 60.2
C08p32050 Brassica napus HOM05D006876 ORTHO05D008708 1.5e-60 236.9 201 60.2
BolC8t50823H Brassica oleracea HOM05D006876 ORTHO05D008708 1.5e-60 236.9 201 60.2
Phvul.001G101300 Phaseolus vulgaris HOM05D006876 ORTHO05D008708 2.1e-59 233.0 197 60.4
Zm00001eb150270 Zea mays HOM05D006876 ORTHO05D008708 4.7e-59 231.9 201 55.2
Os01g0810200 Oryza sativa ssp. japonica HOM05D006876 ORTHO05D008708 6.1e-59 231.5 203 54.7
arahy.Tifrunner.gnm1.ann1.R6YTNA Arachis hypogaea HOM05D006876 ORTHO05D008708 1.4e-58 230.3 195 55.4
Aqoxy1G01501 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 2.6e-57 226.1 197 59.9
Glyma.03G003700 Glycine max HOM05D006876 ORTHO05D008708 3.4e-57 225.7 196 58.7
Migut.K00192 Erythranthe guttata HOM05D006876 ORTHO05D008708 4.4e-57 225.3 194 58.2
Glyma.19G122400 Glycine max HOM05D006876 ORTHO05D008708 1.3e-56 223.8 203 56.7
unitig_899.g15477 Utricularia gibba HOM05D006876 ORTHO05D008708 1.7e-56 223.4 202 56.4
Psat3g083640 Pisum sativum HOM05D006876 ORTHO05D008708 7.0e-55 218.0 140 70.7
VMungo1383G0045 Vigna mungo HOM05D006876 ORTHO05D008708 1.6e-54 216.9 197 57.4
Aqoxy1G01505 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 3.4e-49 199.1 130 69.2
FvH4_1g29600 Fragaria vesca HOM05D006876 ORTHO05D008708 9.2e-47 191.0 132 68.9
ATR1096G134 Amborella trichopoda HOM05D006876 ORTHO05D008708 1.5e-44 183.7 215 45.1
Hma1.2p1_0694F.1_g204350 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 4.0e-42 175.6 109 71.6
DCAR_020618 Daucus carota HOM05D006876 ORTHO05D008708 6.8e-42 174.9 113 69.0
Lj4A828G46 Lonicera japonica HOM05D006876 ORTHO05D008708 6.8e-42 174.9 110 68.2
CSS0021314 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 6.4e-40 168.3 109 68.8
Oeu032953.2 Olea europaea HOM05D006876 ORTHO05D008708 1.1e-39 167.5 248 41.9
ECA233G0065 Erigeron canadensis HOM05D000444 ORTHO05D000489 1.4e-39 167.2 109 67.0
SEGI_40976 Sequoiadendron giganteum HOM05D006876 ORTHO05D008708 2.4e-39 166.4 136 53.7
QL05p001451 Quercus lobata HOM05D006876 ORTHO05D008708 1.2e-38 164.1 96 78.1
Lalb_Chr02g0157641 Lupinus albus HOM05D006876 ORTHO05D008708 3.0e-37 159.5 149 53.0
arahy.Tifrunner.gnm1.ann1.S4H51W Arachis hypogaea HOM05D006876 ORTHO05D008708 3.4e-33 146.0 131 51.1
Actinidia37859 Actinidia chinensis HOM05D006876 ORTHO05D008708 4.6e-30 135.6 87 71.3
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 3.1e-26 122.9 77 72.7
QL05p001731 Quercus lobata HOM05D006876 ORTHO05D008708 3.1e-26 122.9 68 83.8
QL05p085390 Quercus lobata HOM05D006876 ORTHO05D008708 3.1e-26 122.9 68 83.8
arahy.Tifrunner.gnm1.ann1.8Z6XIB Arachis hypogaea HOM05D006876 ORTHO05D008708 2.6e-25 119.8 76 72.4
arahy.Tifrunner.gnm1.ann1.ERVJ4V Arachis hypogaea HOM05D006876 ORTHO05D008708 1.9e-23 113.6 179 35.2
CBR_g17867 Chara braunii HOM05D006876 ORTHO05D008708 1.5e-20 104.0 121 42.1
Ca_08331_v3 Cicer arietinum L. HOM05D006876 ORTHO05D008708 1.9e-20 103.6 67 68.7
DCAR_020619 Daucus carota HOM05D006876 ORTHO05D008708 2.6e-17 93.2 126 46.0
Oeu007164.1 Olea europaea HOM05D006876 ORTHO05D008708 2.2e-16 90.1 71 60.6
arahy.Tifrunner.gnm1.ann1.Q5BN79 Arachis hypogaea HOM05D006876 ORTHO05D008708 4.1e-15 85.9 58 70.7
MCO02G060 Micromonas commoda HOM05D006876 ORTHO05D008708 4.1e-15 85.9 126 35.7
Glyma.10G143650 Glycine max HOM05D006876 ORTHO05D008708 1.1e-10 71.2 44 68.2
Oeu039192.1 Olea europaea HOM05D006876 ORTHO05D008708 5.2e-10 68.9 112 42.9
C06p23790 Brassica napus HOM05D006876 ORTHO05D040197 5.4e-07 58.9 54 55.6
BolC6t37548H Brassica oleracea HOM05D006876 ORTHO05D040197 9.3e-07 58.2 54 53.7
HPP92_016900 Vanilla planifolia HOM05D006876 ORTHO05D008708 6.0e-06 55.5 92 39.1


User provided reference genes

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