Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 3.3e-253 877.9 432 100.0
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 3.0e-222 775.0 621 68.1
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 4.2e-208 728.0 438 81.7
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 3.6e-191 671.8 431 75.4
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 6.3e-188 661.0 435 74.5
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 7.2e-184 647.5 431 73.3
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 1.4e-182 643.3 434 73.7
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 5.2e-182 641.3 403 75.7
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 5.2e-182 641.3 415 73.5
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 4.8e-180 634.8 402 74.4
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 1.8e-179 632.9 394 77.4
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 4.1e-179 631.7 393 75.3
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 4.1e-179 631.7 390 76.2
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 5.3e-179 631.3 397 74.8
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 3.5e-178 628.6 394 76.9
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 7.7e-178 627.5 406 73.9
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 7.7e-178 627.5 408 72.3
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 1.3e-177 626.7 432 70.6
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 2.2e-177 625.9 397 74.1
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 5.0e-177 624.8 393 74.6
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 1.1e-176 623.6 397 74.3
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 7.2e-176 620.9 387 75.5
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 2.1e-175 619.4 392 75.5
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 2.1e-175 619.4 397 73.0
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 5.2e-174 614.8 437 69.3
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 8.8e-174 614.0 432 69.4
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 2.0e-173 612.8 392 74.7
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 2.6e-173 612.5 404 72.8
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 7.5e-173 610.9 420 69.0
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 9.8e-173 610.5 393 72.8
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 1.3e-172 610.1 394 73.4
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 1.7e-172 609.8 427 68.6
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 4.8e-172 608.2 432 70.4
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 1.8e-171 606.3 421 69.1
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 1.6e-170 603.2 420 68.8
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 7.7e-170 600.9 512 61.1
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 1.0e-169 600.5 487 62.6
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 1.0e-169 600.5 395 71.9
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 1.7e-169 599.7 396 72.7
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 2.9e-169 599.0 394 74.1
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 3.8e-169 598.6 392 72.2
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 5.5e-168 594.7 398 71.6
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 9.5e-168 594.0 404 70.3
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 1.2e-167 593.6 409 69.2
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 1.2e-167 593.6 460 65.0
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 1.2e-167 593.6 398 71.6
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 2.1e-167 592.8 402 71.1
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 4.7e-167 591.7 402 70.9
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 6.1e-167 591.3 390 72.3
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 2.3e-166 589.3 401 71.1
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 5.2e-166 588.2 399 71.4
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 1.5e-165 586.6 404 68.6
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 4.9e-164 581.6 396 70.7
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 7.0e-163 577.8 408 69.4
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 1.6e-162 576.6 429 64.1
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 6.6e-161 571.2 396 69.4
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 6.6e-161 571.2 393 69.2
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 8.6e-161 570.9 406 66.3
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 9.5e-160 567.4 399 67.2
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 2.3e-158 562.8 430 66.3
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 3.1e-158 562.4 395 69.4
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 5.2e-158 561.6 406 68.0
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 1.2e-157 560.5 400 67.0
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 3.4e-157 558.9 395 69.6
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 3.4e-157 558.9 401 65.3
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 5.8e-157 558.1 401 68.1
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 4.9e-156 555.1 392 67.1
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 8.3e-156 554.3 413 67.3
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 1.4e-155 553.5 395 68.4
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 1.4e-155 553.5 423 65.0
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.9e-155 553.1 392 66.8
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 3.5e-154 548.9 415 62.9
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 7.8e-154 547.7 392 66.6
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 5.0e-153 545.0 467 57.8
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 6.6e-153 544.7 393 68.7
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 6.6e-153 544.7 393 68.7
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 1.1e-152 543.9 393 68.4
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 1.5e-152 543.5 419 65.4
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 2.8e-151 539.3 416 65.1
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 6.8e-150 534.6 452 60.6
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 1.5e-149 533.5 438 59.6
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 5.8e-149 531.6 331 73.7
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 7.5e-149 531.2 394 66.0
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 3.0e-145 519.2 357 70.6
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 1.5e-144 516.9 392 65.6
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 2.1e-143 513.1 393 65.6
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 1.9e-139 500.0 356 68.5
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 5.4e-139 498.4 332 71.4
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 2.7e-138 496.1 282 83.7
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 2.2e-132 476.5 320 72.2
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 5.4e-131 471.9 339 70.5
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 6.0e-130 468.4 392 59.2
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 6.0e-130 468.4 301 74.4
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 2.3e-129 466.5 329 65.0
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 2.6e-125 453.0 420 53.3
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 4.8e-119 432.2 324 67.0
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 2.9e-116 422.9 386 52.8
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 4.9e-116 422.2 352 61.9
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 2.0e-109 400.2 304 66.4
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 7.1e-107 391.7 445 49.7
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 5.7e-104 382.1 289 65.4
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 7.4e-104 381.7 287 65.5
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 2.8e-103 379.8 289 62.3
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 4.8e-103 379.0 408 48.8
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 9.0e-102 374.8 356 52.2
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.2e-100 370.2 241 73.0
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 7.4e-96 355.1 213 76.1
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 3.8e-92 342.8 241 67.6
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 1.3e-84 317.8 237 64.1
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 1.5e-80 304.3 352 48.3
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 2.6e-80 303.5 466 39.7
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.5e-75 287.7 190 70.0
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 3.8e-60 236.5 171 67.3
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 2.5e-59 233.8 148 75.7
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 4.9e-55 219.5 156 69.9
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 9.1e-54 215.3 402 35.1
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 2.3e-52 210.7 145 69.0
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 1.5e-51 208.0 156 67.3
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 2.8e-50 203.8 266 41.4
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 4.0e-49 199.9 169 59.8
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 3.0e-36 157.1 423 30.0
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.1e-35 155.2 120 64.2
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.9e-35 154.5 421 29.9
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 4.3e-35 153.3 423 28.8
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.2e-34 151.8 425 29.9
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 3.6e-34 150.2 439 29.2
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 3.2e-30 137.1 235 39.6
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 1.7e-28 131.3 91 67.0
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 4.7e-26 123.2 113 51.3
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 1.1e-25 122.1 73 71.2
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 5.2e-25 119.8 81 65.4
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 2.1e-21 107.8 101 57.4
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 3.0e-20 104.0 276 30.8
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.9e-19 101.3 110 49.1
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 2.2e-15 87.8 67 64.2
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 5.4e-14 83.2 72 55.6
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 2.3e-12 77.8 63 60.3
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 1.5e-08 65.1 37 83.8


User provided reference genes

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