Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 7.8e-149 530.4 261 100.0
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 2.7e-125 452.2 251 89.6
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 1.4e-86 323.6 176 88.6
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 3.5e-85 318.9 176 86.9
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 1.3e-84 317.0 251 66.1
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 3.0e-84 315.8 173 86.1
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 3.9e-84 315.5 176 84.1
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 8.7e-84 314.3 173 85.0
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 9.7e-83 310.8 172 84.3
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 2.2e-82 309.7 175 85.1
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.2e-82 309.7 173 84.4
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 2.8e-82 309.3 172 84.3
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 2.8e-82 309.3 173 84.4
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 4.8e-82 308.5 173 84.4
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 4.8e-82 308.5 176 84.7
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 6.3e-82 308.1 173 83.2
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 1.1e-81 307.4 173 83.2
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 1.4e-81 307.0 173 82.7
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 2.4e-81 306.2 176 83.0
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 3.1e-81 305.8 176 83.0
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 3.1e-81 305.8 176 83.0
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 1.5e-80 303.5 173 82.1
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 2.6e-80 302.8 177 82.5
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 3.4e-80 302.4 176 79.5
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 3.4e-80 302.4 176 79.5
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 3.4e-80 302.4 173 82.7
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 4.5e-80 302.0 175 82.3
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 4.5e-80 302.0 173 82.1
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 4.5e-80 302.0 173 83.8
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 4.5e-80 302.0 173 81.5
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 7.7e-80 301.2 176 83.0
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.0e-79 300.8 188 76.6
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 1.3e-79 300.4 182 78.6
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 1.7e-79 300.1 182 78.6
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 1.7e-79 300.1 178 80.9
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 2.2e-79 299.7 178 80.9
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 3.8e-79 298.9 173 81.5
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 5.0e-79 298.5 173 82.1
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 8.5e-79 297.7 173 80.3
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 1.1e-78 297.4 172 81.4
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 1.4e-78 297.0 177 78.5
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.4e-78 297.0 188 75.0
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 1.4e-78 297.0 188 75.5
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 1.9e-78 296.6 175 80.6
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 4.2e-78 295.4 173 79.8
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 4.2e-78 295.4 188 74.5
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 5.5e-78 295.0 173 79.8
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 3.6e-77 292.4 181 78.5
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 4.6e-77 292.0 175 80.0
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 4.6e-77 292.0 175 76.0
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 4.6e-77 292.0 173 76.9
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 6.1e-77 291.6 175 77.7
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 7.9e-77 291.2 177 75.7
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 7.9e-77 291.2 173 80.9
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 7.9e-77 291.2 175 80.0
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 1.0e-76 290.8 175 80.0
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 1.0e-76 290.8 175 80.0
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 1.4e-76 290.4 174 78.7
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 1.4e-76 290.4 226 65.0
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 2.3e-76 289.7 176 80.1
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 3.9e-76 288.9 175 76.6
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 5.1e-76 288.5 174 78.2
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 5.1e-76 288.5 173 78.0
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 8.8e-76 287.7 175 76.6
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 2.0e-75 286.6 173 80.9
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 2.5e-75 286.2 173 75.7
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 5.7e-75 285.0 175 78.3
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 5.7e-75 285.0 175 77.1
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 1.3e-74 283.9 173 76.3
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 2.2e-74 283.1 173 74.0
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 2.2e-74 283.1 177 75.1
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 3.7e-74 282.3 177 75.1
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 4.8e-74 282.0 174 77.6
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 6.3e-74 281.6 175 74.3
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 6.3e-74 281.6 175 76.0
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 8.2e-74 281.2 178 74.7
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 1.4e-73 280.4 178 74.7
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 3.1e-73 279.3 179 74.3
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 4.1e-73 278.9 173 72.3
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 1.2e-72 277.3 173 74.0
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 2.0e-72 276.6 172 72.7
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 2.0e-72 276.6 179 73.7
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 2.6e-72 276.2 179 73.2
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 5.9e-72 275.0 196 71.4
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 7.7e-72 274.6 178 72.5
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 1.7e-71 273.5 168 77.4
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 1.7e-71 273.5 179 71.5
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 5.0e-71 271.9 175 70.9
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 1.1e-70 270.8 282 52.8
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 4.2e-70 268.9 175 69.7
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 3.6e-69 265.8 177 70.6
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 6.1e-69 265.0 173 72.8
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 7.9e-69 264.6 177 70.6
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 1.0e-68 264.2 177 70.1
Sp1g16080 Schrenkiella parvula HOM05D006376 ORTHO05D008046 1.4e-68 263.8 150 82.7
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 9.7e-67 257.7 173 71.1
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 6.3e-66 255.0 173 73.4
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 8.8e-60 234.6 173 64.7
SEGI_27865 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 2.6e-59 233.0 172 65.7
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 4.1e-57 225.7 178 65.2
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 3.5e-56 222.6 194 57.2
MD06G1223100 Malus domestica HOM05D006376 ORTHO05D008046 6.5e-55 218.4 120 80.8
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 2.1e-53 213.4 185 55.1
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 1.0e-52 211.1 163 62.6
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 2.0e-48 196.8 184 51.6
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 2.5e-46 189.9 176 51.1
Mapoly0001s0324 Marchantia polymorpha HOM05D006376 ORTHO05D008046 6.1e-45 185.3 178 48.9
SEGI_30520 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 4.4e-35 152.5 95 72.6
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 1.2e-29 134.4 80 82.5
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 2.2e-26 123.6 80 78.8
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 1.5e-22 110.9 171 37.4
Cre09.g401350 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D008046 5.6e-22 109.0 174 37.4
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.2e-21 107.8 71 74.6
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 9.2e-17 91.7 60 76.7
SEGI_17791 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 9.2e-17 91.7 62 62.9
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 1.1e-14 84.7 52 84.6
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 1.5e-14 84.3 52 82.7
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 3.3e-14 83.2 52 82.7
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 3.3e-14 83.2 52 82.7
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 1.2e-13 81.3 52 80.8
Dinv17636 Davidia involucrata HOM05D012663 ORTHO05D004533 1.3e-10 71.2 47 74.5
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 3.2e-09 66.6 43 83.7
SMO137G0132 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.6e-08 64.3 72 50.0
SMO170G0025 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 4.6e-08 62.8 72 48.6


User provided reference genes

Program Settings