Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019651 Carpinus fangiana HOM05D006919 ORTHO05D008705 5.9e-80 300.8 155 100.0
CiPaw.15G143800 Carya illinoinensis HOM05D006919 ORTHO05D008705 4.6e-64 248.1 145 84.1
QL10p029823 Quercus lobata HOM05D006919 ORTHO05D008705 5.1e-63 244.6 147 82.3
QL10p030230 Quercus lobata HOM05D006919 ORTHO05D008705 1.8e-60 236.1 169 72.2
TAR629G0573 Trochodendron aralioides HOM05D006919 ORTHO05D008705 2.3e-60 235.7 146 77.4
CANSAT80G0223 Cannabis sativa HOM05D006919 ORTHO05D008705 5.2e-60 234.6 147 76.2
Prupe.5G234100 Prunus persica HOM05D006919 ORTHO05D008705 2.6e-59 232.3 146 77.4
arahy.Tifrunner.gnm1.ann1.CTKR59 Arachis hypogaea HOM05D006919 ORTHO05D008705 3.4e-59 231.9 146 77.4
MD06G1227700 Malus domestica HOM05D006919 ORTHO05D008705 4.4e-59 231.5 146 77.4
PGR083G2730 Punica granatum HOM05D006919 ORTHO05D008705 4.4e-59 231.5 145 75.9
COL.COLO4_04912 Corchorus olitorius HOM05D006919 ORTHO05D008705 5.8e-59 231.1 144 78.5
Manes.06G005400 Manihot esculenta HOM05D006919 ORTHO05D008705 5.8e-59 231.1 145 75.2
Atru.chr9.1680 Acer truncatum HOM05D006919 ORTHO05D008705 7.5e-59 230.7 146 75.3
arahy.Tifrunner.gnm1.ann1.2R737Y Arachis hypogaea HOM05D006919 ORTHO05D008705 7.5e-59 230.7 146 76.7
Glyma.07G102800 Glycine max HOM05D006919 ORTHO05D008705 7.5e-59 230.7 151 75.5
FAN13G2797 Fragaria x ananassa HOM05D006919 ORTHO05D008705 1.3e-58 229.9 146 76.7
Gohir.A07G060000 Gossypium hirsutum HOM05D006919 ORTHO05D008705 2.2e-58 229.2 144 77.8
Gohir.D07G064700 Gossypium hirsutum HOM05D006919 ORTHO05D008705 2.2e-58 229.2 144 77.8
Gorai.001G068200 Gossypium raimondii HOM05D006919 ORTHO05D008705 2.2e-58 229.2 144 77.8
Thecc.03G055400 Theobroma cacao HOM05D006919 ORTHO05D008705 2.9e-58 228.8 144 79.2
FAN18G1663 Fragaria x ananassa HOM05D006919 ORTHO05D008705 3.7e-58 228.4 146 76.0
Atru.chr9.1714 Acer truncatum HOM05D006919 ORTHO05D008705 4.9e-58 228.0 145 75.2
RcHm_v2.0_Chr7g0178261 Rosa chinensis HOM05D006919 ORTHO05D008705 8.3e-58 227.3 146 75.3
Phvul.004G149400 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 1.1e-57 226.9 146 78.1
Dinv08205 Davidia involucrata HOM05D006919 ORTHO05D008705 1.4e-57 226.5 146 76.0
Potri.015G037600 Populus trichocarpa HOM05D006919 ORTHO05D008705 1.9e-57 226.1 144 76.4
FAN08G0969 Fragaria x ananassa HOM05D006919 ORTHO05D008705 2.4e-57 225.7 146 75.3
Phvul.004G150300 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 2.4e-57 225.7 146 76.7
FvH4_5g17430 Fragaria vesca HOM05D006919 ORTHO05D008705 9.2e-57 223.8 147 75.5
Duzib205G1348 Durio zibethinus HOM05D006919 ORTHO05D008705 2.1e-56 222.6 144 77.1
Actinidia18895 Actinidia chinensis HOM05D006919 ORTHO05D008705 3.5e-56 221.9 146 72.6
Lj2g0027212 Lotus japonicus HOM05D006919 ORTHO05D008705 6.0e-56 221.1 146 72.6
Lalb_Chr24g0398171 Lupinus albus HOM05D006919 ORTHO05D008705 1.0e-55 220.3 147 70.7
VMungo0464G0753 Vigna mungo HOM05D006919 ORTHO05D008705 1.7e-55 219.5 146 74.7
FAN04G0116 Fragaria x ananassa HOM05D006919 ORTHO05D008705 2.3e-55 219.2 147 74.1
Nn4g24311 Nelumbo nucifera HOM05D006919 ORTHO05D008705 2.3e-55 219.2 146 72.6
CSS0007871 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 5.1e-55 218.0 148 72.3
TPR.G8644 Trifolium pratense HOM05D006919 ORTHO05D008705 5.1e-55 218.0 146 71.2
GSVIVG01008449001 Vitis vinifera HOM05D006919 ORTHO05D008705 5.1e-55 218.0 146 72.6
Psat1g030800 Pisum sativum HOM05D006919 ORTHO05D008705 1.1e-54 216.9 146 71.9
Medtr6g069620 Medicago truncatula HOM05D006919 ORTHO05D008705 1.5e-54 216.5 146 72.6
Sed0003421 Sechium edule HOM05D006919 ORTHO05D008705 1.9e-54 216.1 145 73.1
arahy.Tifrunner.gnm1.ann1.54PB3V Arachis hypogaea HOM05D006919 ORTHO05D008705 2.5e-54 215.7 167 66.5
THA.LOC104820349 Tarenaya hassleriana HOM05D006919 ORTHO05D008705 2.5e-54 215.7 145 71.0
Migut.D01538 Erythranthe guttata HOM05D006919 ORTHO05D008705 3.3e-54 215.3 147 70.7
ClCG04G010590 Citrullus lanatus HOM05D006919 ORTHO05D008705 7.3e-54 214.2 145 73.1
TWI81G0447 Tripterygium wilfordii HOM05D006919 ORTHO05D008705 9.5e-54 213.8 146 69.9
Cc04_g06200 Coffea canephora HOM05D006919 ORTHO05D008705 1.2e-53 213.4 150 67.3
Migut.D01529 Erythranthe guttata HOM05D006919 ORTHO05D008705 1.6e-53 213.0 147 69.4
Oeu026273.1 Olea europaea HOM05D006919 ORTHO05D008705 2.8e-53 212.2 147 68.7
Sopen03g037620 Solanum pennellii HOM05D006919 ORTHO05D008705 3.6e-53 211.8 147 68.7
Solyc03g118660.3 Solanum lycopersicum HOM05D006919 ORTHO05D008705 4.7e-53 211.5 147 68.0
PSO063G3076 Papaver somniferum HOM05D006919 ORTHO05D008705 6.2e-53 211.1 146 71.2
PGSC0003DMG402005674 Solanum tuberosum HOM05D006919 ORTHO05D008705 8.1e-53 210.7 147 68.7
arahy.Tifrunner.gnm1.ann1.95HZXM Arachis hypogaea HOM05D006919 ORTHO05D008705 1.8e-52 209.5 189 59.3
AUR62020416 Chenopodium quinoa HOM05D006919 ORTHO05D008705 1.8e-52 209.5 144 66.7
CsaV3_1G007200 Cucumis sativus L. HOM05D006919 ORTHO05D008705 2.4e-52 209.1 143 72.7
PSO754G0044 Papaver somniferum HOM05D006919 ORTHO05D008705 2.4e-52 209.1 146 70.5
Hund01978 Selenicereus undatus HOM05D006919 ORTHO05D008705 2.4e-52 209.1 146 69.9
CAN.G843.52 Capsicum annuum HOM05D006919 ORTHO05D008705 4.0e-52 208.4 147 68.0
MELO3C002137.2 Cucumis melo HOM05D006919 ORTHO05D008705 6.8e-52 207.6 143 72.0
AL1G55190 Arabidopsis lyrata HOM05D006919 ORTHO05D008705 2.0e-51 206.1 145 69.0
MSTRG.9306 Avicennia marina HOM05D006919 ORTHO05D008705 2.6e-51 205.7 147 68.0
AT1G48550 Arabidopsis thaliana HOM05D006919 ORTHO05D008705 3.4e-51 205.3 145 68.3
Nitab4.5_0013135g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 3.4e-51 205.3 147 66.7
C06p03070 Brassica napus HOM05D006919 ORTHO05D008705 5.8e-51 204.5 145 69.0
BolC6t35427H Brassica oleracea HOM05D006919 ORTHO05D008705 5.8e-51 204.5 145 69.0
Carub.0001s3766 Capsella rubella HOM05D006919 ORTHO05D008705 9.9e-51 203.8 145 67.6
BcaB07g33748 Brassica carinata HOM05D006919 ORTHO05D008705 2.9e-50 202.2 145 67.6
A06p04410 Brassica napus HOM05D006919 ORTHO05D008705 2.9e-50 202.2 145 68.3
Sp1g35490 Schrenkiella parvula HOM05D006919 ORTHO05D008705 8.4e-50 200.7 145 66.9
Aqoxy3G04092 Aquilegia oxysepala HOM05D006919 ORTHO05D008705 1.1e-49 200.3 146 66.4
Thhalv10012210m.g Eutrema salsugineum HOM05D006919 ORTHO05D008705 1.1e-49 200.3 145 66.9
Lsat_1_v5_gn_8_720 Lactuca sativa HOM05D006919 ORTHO05D008705 3.2e-49 198.7 148 64.9
Aa31LG10G5250 Aethionema arabicum HOM05D006919 ORTHO05D008705 7.1e-49 197.6 145 65.5
RcHm_v2.0_Chr7g0224581 Rosa chinensis HOM05D006919 ORTHO05D008705 9.2e-49 197.2 129 72.9
BcaC08g43045 Brassica carinata HOM05D006919 ORTHO05D008705 1.2e-48 196.8 151 65.6
BraA06t23646Z Brassica rapa HOM05D006919 ORTHO05D008705 1.2e-48 196.8 147 67.3
ECA233G0189 Erigeron canadensis HOM05D006919 ORTHO05D008705 3.0e-47 192.2 148 63.5
HanXRQChr05g0142681 Helianthus annuus HOM05D006919 ORTHO05D008705 3.0e-47 192.2 145 64.1
Cpa.g.sc3.392 Carica papaya HOM05D006919 ORTHO05D008705 5.1e-47 191.4 157 61.8
ATR1100G039 Amborella trichopoda HOM05D006919 ORTHO05D008705 5.6e-46 188.0 146 62.3
AUR62015799 Chenopodium quinoa HOM05D006919 ORTHO05D008705 2.4e-44 182.6 125 66.4
CSS0013537 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 4.9e-42 174.9 148 60.8
Ciclev10010588m.g Citrus clementina HOM05D006919 ORTHO05D008705 6.6e-39 164.5 145 59.3
EL10Ac4g07782 Beta vulgaris HOM05D006919 ORTHO05D008705 3.6e-37 158.7 146 56.8
AagrBONN_evm.TU.Sc2ySwM_344.2286 Anthoceros agrestis HOM05D006919 ORTHO05D008705 2.0e-35 152.9 147 49.0
HPP92_023812 Vanilla planifolia HOM05D006919 ORTHO05D008705 1.7e-34 149.8 147 56.5
vmacro16410 Vaccinium macrocarpon HOM05D006919 ORTHO05D008705 2.9e-34 149.1 97 70.1
Mapoly0012s0164 Marchantia polymorpha HOM05D006919 ORTHO05D008705 2.4e-33 146.0 151 45.0
RcHm_v2.0_Chr5g0035741 Rosa chinensis HOM05D006919 ORTHO05D008705 4.2e-33 145.2 94 72.3
CDE08G0345 Ceratophyllum demersum HOM05D006919 ORTHO05D008705 1.0e-31 140.6 128 55.5
Ca_25336_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 2.3e-31 139.4 111 63.1
Ca_29640_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 2.3e-31 139.4 111 63.1
Haze_18872 Corylus avellana HOM05D006919 ORTHO05D008705 1.3e-29 133.7 160 53.1
RcHm_v2.0_Chr7g0212051 Rosa chinensis HOM05D006919 ORTHO05D008705 6.2e-29 131.3 88 72.7
Pp3c2_29770 Physcomitrium patens HOM05D006919 ORTHO05D008705 8.1e-29 131.0 147 40.8
Pp3c1_6570 Physcomitrium patens HOM05D006919 ORTHO05D008705 3.1e-28 129.0 143 42.7
AagrBONN_evm.TU.Sc2ySwM_228.5103 Anthoceros agrestis HOM05D006919 ORTHO05D008705 1.2e-27 127.1 143 40.6
SMO143G0218 Selaginella moellendorffii HOM05D006919 ORTHO05D008705 3.4e-27 125.6 147 43.5
Eucgr.B00878 Eucalyptus grandis HOM05D006919 ORTHO05D008705 3.9e-23 112.1 81 63.0
Eucgr.B00996 Eucalyptus grandis HOM05D006919 ORTHO05D008705 3.9e-23 112.1 81 63.0
Lj9C419T19 Lonicera japonica HOM05D006919 ORTHO05D008705 1.3e-21 107.1 70 77.1
Peaxi162Scf00314g00331 Petunia axillaris HOM05D006919 ORTHO05D008705 2.1e-21 106.3 77 58.4
CBR_g44935 Chara braunii HOM05D006919 ORTHO05D008705 4.5e-19 98.6 165 35.2
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 2.5e-17 92.8 56 69.6
MBI09_g15241_MAGBIO Magnolia biondii HOM05D006919 ORTHO05D008705 4.2e-17 92.0 56 73.2
Lj9A419G30 Lonicera japonica HOM05D006919 ORTHO05D008705 3.9e-15 85.5 57 71.9
Nitab4.5_0012026g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 4.3e-14 82.0 54 63.0
SEGI_02358 Sequoiadendron giganteum HOM05D006919 ORTHO05D008705 1.0e-10 70.9 60 53.3
SEGI_39350 Sequoiadendron giganteum HOM05D006919 ORTHO05D008705 1.7e-10 70.1 72 50.0


User provided reference genes

Program Settings