Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019640 Carpinus fangiana HOM05D011273 ORTHO05D013289 5.8e-73 277.7 168 100.0
Cfa018419 Carpinus fangiana HOM05D011273 ORTHO05D013289 4.6e-70 268.1 168 86.3
Cfa021206 Carpinus fangiana HOM05D011273 ORTHO05D013289 1.9e-68 262.7 168 77.4
Cfa012649 Carpinus fangiana HOM05D011273 ORTHO05D013289 2.5e-68 262.3 168 77.4
Cfa012336 Carpinus fangiana HOM05D011273 ORTHO05D013289 1.1e-66 256.9 168 76.2
Cfa008536 Carpinus fangiana HOM05D011273 ORTHO05D013289 6.1e-54 214.5 169 61.5
Cfa010712 Carpinus fangiana HOM05D011273 ORTHO05D013289 2.3e-53 212.6 169 61.5
Cfa008487 Carpinus fangiana HOM05D011273 ORTHO05D013289 2.8e-51 205.7 169 60.9
Cfa002369 Carpinus fangiana HOM05D011273 ORTHO05D013289 5.1e-45 184.9 168 76.2
Cfa005445 Carpinus fangiana HOM05D011273 ORTHO05D013289 2.0e-41 172.9 175 52.6
Cfa010107 Carpinus fangiana HOM05D011273 ORTHO05D013289 7.0e-26 121.3 120 49.2
Cfa022968 Carpinus fangiana HOM05D011273 ORTHO05D013289 1.6e-25 120.2 120 49.2
Cfa012337 Carpinus fangiana HOM05D011273 ORTHO05D013289 3.6e-22 109.0 58 91.4
Hma1.2p1_0230F.1_g097240 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.2e-09 67.4 76 39.5
Cfa002120 Carpinus fangiana HOM05D011273 ORTHO05D013289 5.9e-09 65.1 72 43.1
DCAR_028160 Daucus carota HOM05D001383 ORTHO05D000309 5.9e-09 65.1 71 40.8
Dinv09832 Davidia involucrata HOM05D001383 ORTHO05D000309 2.3e-08 63.2 69 40.6
Rhsim01G0020400 Rhododendron simsii HOM05D001383 ORTHO05D000309 3.0e-08 62.8 84 39.3
Hma1.2p1_0012F.1_g007535 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.9e-08 62.4 86 34.9
SGA_v2.0_scaffold4G02359 Striga asiatica HOM05D001383 ORTHO05D000309 1.1e-07 60.8 90 33.3
DCAR_023907 Daucus carota HOM05D011273 ORTHO05D000309 2.5e-07 59.7 109 31.2
Hma1.2p1_1407F.1_g281470 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.5e-07 59.7 71 39.4
Lsat_1_v5_gn_3_138160 Lactuca sativa HOM05D009585 ORTHO05D000309 2.5e-07 59.7 93 35.5
Nitab4.5_0000115g0400 Nicotiana tabacum HOM05D001383 ORTHO05D000309 2.5e-07 59.7 71 36.6
Hma1.2p1_0470F.1_g159220 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.3e-07 59.3 65 43.1
Hma1.2p1_2569F.1_g324543 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.3e-07 59.3 57 47.4
Nitab4.5_0008271g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 3.3e-07 59.3 80 33.8
Hma1.2p1_0257F.1_g103490 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 4.3e-07 58.9 72 38.9
Nitab4.5_0011664g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 4.3e-07 58.9 73 35.6
Nitab4.5_0029094g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 4.3e-07 58.9 73 35.6
Haze_20224 Corylus avellana HOM05D000484 ORTHO05D000346 5.6e-07 58.5 104 30.8
Hma1.2p1_0048F.1_g028060 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 7.3e-07 58.2 107 32.7
Prupe.7G055500 Prunus persica HOM05D001383 ORTHO05D000309 7.3e-07 58.2 59 40.7
Prupe.8G093700 Prunus persica HOM05D001383 ORTHO05D000309 7.3e-07 58.2 71 33.8
Hma1.2p1_0224F.1_g094550 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 9.5e-07 57.8 57 47.4
Peaxi162Scf00446g00005 Petunia axillaris HOM05D001383 ORTHO05D000309 9.5e-07 57.8 60 41.7
SGA_v2.0_scaffold43G16251 Striga asiatica HOM05D001383 ORTHO05D000309 9.5e-07 57.8 99 29.3
Hma1.2p1_1219F.1_g267960 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.2e-06 57.4 85 32.9
Peaxi162Scf00814g00243 Petunia axillaris HOM05D001383 ORTHO05D000309 1.2e-06 57.4 78 34.6
VMungo1215G1066 Vigna mungo HOM05D008573 ORTHO05D009911 1.2e-06 57.4 99 32.3
Ah.03g139560 Amaranthus hybridus HOM05D008388 ORTHO05D000309 1.6e-06 57.0 105 36.2
AUR62006272 Chenopodium quinoa HOM05D008388 ORTHO05D000309 1.6e-06 57.0 65 40.0
Nitab4.5_0001288g0050 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.6e-06 57.0 73 32.9
Nitab4.5_0001839g0060 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.6e-06 57.0 73 32.9
SGA_v2.0_scaffold15G07207 Striga asiatica HOM05D001383 ORTHO05D000309 1.6e-06 57.0 98 27.6
SGA_v2.0_scaffold22G09703 Striga asiatica HOM05D001383 ORTHO05D000309 1.6e-06 57.0 99 29.3
SGA_v2.0_scaffold283G46984 Striga asiatica HOM05D001383 ORTHO05D000309 1.6e-06 57.0 96 29.2
SGA_v2.0_scaffold333G49004 Striga asiatica HOM05D001383 ORTHO05D000309 1.6e-06 57.0 90 33.3
SGA_v2.0_scaffold5G03034 Striga asiatica HOM05D001383 ORTHO05D000309 1.6e-06 57.0 99 29.3
Glyma.01G130300 Glycine max HOM05D001383 ORTHO05D000309 2.1e-06 56.6 88 31.8
Hma1.2p1_0283F.1_g113450 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.1e-06 56.6 61 39.3
Hma1.2p1_0362F.1_g136570 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.1e-06 56.6 58 41.4
Hma1.2p1_1389F.1_g280030 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.1e-06 56.6 100 33.0
Nitab4.5_0003518g0030 Nicotiana tabacum HOM05D004040 ORTHO05D000309 2.1e-06 56.6 73 34.2
Medtr2g017540 Medicago truncatula HOM05D001383 ORTHO05D000309 2.8e-06 56.2 88 31.8
QL08p000859 Quercus lobata HOM05D022142 ORTHO05D000309 2.8e-06 56.2 83 33.7
QL11p007191 Quercus lobata HOM05D000005 ORTHO05D000012 2.8e-06 56.2 88 30.7
VMungo1298G0001 Vigna mungo HOM05D008573 ORTHO05D009911 2.8e-06 56.2 90 30.0
Ah.01g011000 Amaranthus hybridus HOM05D008388 ORTHO05D000309 3.6e-06 55.8 110 36.4
Lsat_1_v5_gn_4_135900 Lactuca sativa HOM05D009585 ORTHO05D000309 3.6e-06 55.8 72 36.1
Medtr2g008290 Medicago truncatula HOM05D001383 ORTHO05D000309 3.6e-06 55.8 80 30.0
Medtr5g021030 Medicago truncatula HOM05D001383 ORTHO05D000309 3.6e-06 55.8 80 30.0
Nitab4.5_0000216g0400 Nicotiana tabacum HOM05D001383 ORTHO05D000309 3.6e-06 55.8 69 34.8
SGA_v2.0_scaffold167G38437 Striga asiatica HOM05D001383 ORTHO05D000309 3.6e-06 55.8 62 35.5
DCAR_001034 Daucus carota HOM05D001383 ORTHO05D000309 4.7e-06 55.5 90 33.3
HanXRQChr03g0077471 Helianthus annuus HOM05D001383 ORTHO05D000309 4.7e-06 55.5 90 33.3
Nitab4.5_0001839g0030 Nicotiana tabacum HOM05D004040 ORTHO05D000309 4.7e-06 55.5 70 32.9
Peaxi162Scf00723g00110 Petunia axillaris HOM05D001383 ORTHO05D000309 4.7e-06 55.5 56 39.3
SGA_v2.0_scaffold157G37340 Striga asiatica HOM05D001383 ORTHO05D000309 4.7e-06 55.5 99 28.3
Hma1.2p1_2779F.1_g328290 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 6.2e-06 55.1 72 34.7
Medtr1g070405 Medicago truncatula HOM05D001383 ORTHO05D000309 6.2e-06 55.1 82 30.5
Hma1.2p1_0211F.1_g089820 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 8.0e-06 54.7 67 35.8
Medtr8g466420 Medicago truncatula HOM05D009039 ORTHO05D011159 8.0e-06 54.7 105 32.4
SGA_v2.0_scaffold123G33399 Striga asiatica HOM05D001383 ORTHO05D000309 8.0e-06 54.7 78 32.1
SGA_v2.0_scaffold310G48213 Striga asiatica HOM05D001383 ORTHO05D000309 8.0e-06 54.7 62 40.3
VMungo0647G2310 Vigna mungo HOM05D008589 ORTHO05D010715 8.0e-06 54.7 115 26.1


User provided reference genes

Program Settings