Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019639 Carpinus fangiana HOM05D007021 ORTHO05D008916 6.6e-193 677.2 335 100.0
QL10p030610 Quercus lobata HOM05D007021 ORTHO05D008916 1.7e-71 273.9 177 81.4
CiPaw.16G096000 Carya illinoinensis HOM05D007021 ORTHO05D008916 2.7e-69 266.5 180 81.1
MD06G1228200 Malus domestica HOM05D007021 ORTHO05D008916 3.8e-63 246.1 183 73.2
GSVIVG01008459001 Vitis vinifera HOM05D007021 ORTHO05D008916 6.4e-63 245.4 180 76.7
Dinv18013 Davidia involucrata HOM05D007021 ORTHO05D008916 8.4e-63 245.0 169 79.3
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 9.2e-62 241.5 218 64.2
RcHm_v2.0_Chr7g0178211 Rosa chinensis HOM05D007021 ORTHO05D008916 9.2e-62 241.5 183 72.7
Atru.chr9.1670 Acer truncatum HOM05D007021 ORTHO05D008916 6.0e-61 238.8 170 74.1
CSS0017706 Camellia sinensis var. sinensis HOM05D007021 ORTHO05D008916 1.1e-59 234.6 181 72.9
Prupe.5G234700 Prunus persica HOM05D007021 ORTHO05D008916 1.5e-59 234.2 180 75.6
FAN04G2374 Fragaria x ananassa HOM05D007021 ORTHO05D008916 9.6e-59 231.5 183 70.5
TAR623G0728 Trochodendron aralioides HOM05D007021 ORTHO05D008916 9.6e-59 231.5 177 69.5
FAN08G1321 Fragaria x ananassa HOM05D007021 ORTHO05D008916 1.2e-58 231.1 183 69.9
CANSAT80G0297 Cannabis sativa HOM05D007021 ORTHO05D008916 2.1e-58 230.3 167 76.0
FvH4_5g17480 Fragaria vesca HOM05D007021 ORTHO05D008916 2.1e-58 230.3 183 69.9
FAN18G1853 Fragaria x ananassa HOM05D007021 ORTHO05D008916 2.1e-58 230.3 183 69.9
CANSAT80G1746 Cannabis sativa HOM05D007021 ORTHO05D008916 6.2e-58 228.8 167 75.4
Gorai.006G191500 Gossypium raimondii HOM05D007021 ORTHO05D008916 6.2e-58 228.8 170 74.7
Hma1.2p1_0163F.1_g073000 Hydrangea macrophylla HOM05D007021 ORTHO05D008916 6.2e-58 228.8 180 71.1
Gohir.A09G174900 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.4e-57 227.6 165 76.4
Gohir.D09G170185 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.4e-57 227.6 165 76.4
TWI81G0868 Tripterygium wilfordii HOM05D007021 ORTHO05D008916 2.4e-57 226.9 184 71.2
COL.COLO4_28897 Corchorus olitorius HOM05D007021 ORTHO05D008916 3.1e-57 226.5 166 75.3
Cpa.g.sc3.381 Carica papaya HOM05D007021 ORTHO05D008916 5.2e-57 225.7 202 62.9
Thecc.03G058600 Theobroma cacao HOM05D007021 ORTHO05D008916 9.0e-57 224.9 175 70.9
MSTRG.11303 Avicennia marina HOM05D007021 ORTHO05D008916 7.6e-56 221.9 169 73.4
Ciclev10009503m.g Citrus clementina HOM05D007021 ORTHO05D008916 9.9e-56 221.5 168 70.2
Gorai.003G035100 Gossypium raimondii HOM05D007021 ORTHO05D008916 3.8e-55 219.5 165 73.9
Aqoxy1G00082 Aquilegia oxysepala HOM05D007021 ORTHO05D008916 1.1e-54 218.0 171 70.2
Gohir.D03G033500 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.4e-54 217.6 165 72.7
Nn7g37125 Nelumbo nucifera HOM05D007021 ORTHO05D008916 1.9e-54 217.2 169 70.4
Potri.015G036500 Populus trichocarpa HOM05D007021 ORTHO05D008916 3.2e-54 216.5 177 68.9
Gohir.D08G085600 Gossypium hirsutum HOM05D007021 ORTHO05D008916 4.2e-54 216.1 165 72.7
Sabra15G0029900 Salix brachista HOM05D007021 ORTHO05D008916 1.6e-53 214.2 180 69.4
Glyma.08G055300 Glycine max HOM05D007021 ORTHO05D008916 1.7e-52 210.7 161 72.7
Glyma.05G246900 Glycine max HOM05D007021 ORTHO05D008916 2.3e-52 210.3 162 72.2
Migut.I00268 Erythranthe guttata HOM05D007021 ORTHO05D008916 3.0e-52 209.9 158 72.8
PGR044G2095 Punica granatum HOM05D007021 ORTHO05D008916 1.9e-51 207.2 152 75.0
Lsat_1_v5_gn_8_115881 Lactuca sativa HOM05D007021 ORTHO05D008916 4.3e-51 206.1 159 68.6
Manes.06G004800 Manihot esculenta HOM05D007021 ORTHO05D008916 4.3e-51 206.1 134 81.3
HanXRQChr15g0486591 Helianthus annuus HOM05D007021 ORTHO05D008916 9.6e-51 204.9 147 72.8
Phvul.002G331000 Phaseolus vulgaris HOM05D007021 ORTHO05D008916 9.6e-51 204.9 160 67.5
Sed0001257 Sechium edule HOM05D007021 ORTHO05D008916 2.1e-50 203.8 166 67.5
Gorai.004G090100 Gossypium raimondii HOM05D007021 ORTHO05D008916 3.6e-50 203.0 149 73.8
Solyc05g006440.4 Solanum lycopersicum HOM05D007021 ORTHO05D008916 4.8e-50 202.6 166 69.3
Lj9A418T22 Lonicera japonica HOM05D007021 ORTHO05D008916 1.4e-49 201.1 179 62.6
PGSC0003DMG400022612 Solanum tuberosum HOM05D007021 ORTHO05D008916 1.8e-49 200.7 166 69.3
ClCG06G014200 Citrullus lanatus HOM05D007021 ORTHO05D008916 2.4e-49 200.3 171 64.9
MELO3C017374.2 Cucumis melo HOM05D007021 ORTHO05D008916 3.1e-49 199.9 166 65.1
Sopen05g002370 Solanum pennellii HOM05D007021 ORTHO05D008916 5.3e-49 199.1 158 70.3
VMungo0251G3404 Vigna mungo HOM05D007021 ORTHO05D008916 5.3e-49 199.1 173 64.2
Lalb_Chr05g0221591 Lupinus albus HOM05D007021 ORTHO05D008916 9.0e-49 198.4 135 77.0
ATR1096G089 Amborella trichopoda HOM05D007021 ORTHO05D008916 1.5e-48 197.6 173 64.2
Haze_18883 Corylus avellana HOM05D007021 ORTHO05D008916 1.5e-48 197.6 135 80.7
FAN13G1201 Fragaria x ananassa HOM05D007021 ORTHO05D008916 1.5e-48 197.6 142 74.6
Eucgr.K02276 Eucalyptus grandis HOM05D007021 ORTHO05D008916 4.5e-48 196.1 141 77.3
Rhsim12G0138000 Rhododendron simsii HOM05D007021 ORTHO05D008916 4.5e-48 196.1 195 61.5
CsaV3_1G004470 Cucumis sativus L. HOM05D007021 ORTHO05D008916 1.3e-47 194.5 166 64.5
Nitab4.5_0004119g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 1.3e-47 194.5 157 71.3
Nitab4.5_0002312g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 1.7e-47 194.1 157 71.3
Sc04g0004860 Simmondsia chinensis HOM05D007021 ORTHO05D008916 2.2e-47 193.7 136 74.3
CAN.G159.4 Capsicum annuum HOM05D007021 ORTHO05D008916 2.9e-47 193.4 187 62.6
PSO339G6055 Papaver somniferum HOM05D007021 ORTHO05D008916 4.9e-47 192.6 145 72.4
Thhalv10021570m.g Eutrema salsugineum HOM05D007021 ORTHO05D008916 8.4e-47 191.8 147 66.0
HPP92_019433 Vanilla planifolia HOM05D007021 ORTHO05D008916 8.4e-47 191.8 132 78.0
CARHR093260 Cardamine hirsuta HOM05D007021 ORTHO05D008916 4.2e-46 189.5 128 73.4
Cc04_g06110 Coffea canephora HOM05D007021 ORTHO05D008916 4.2e-46 189.5 111 88.3
MBI13_g41749_MAGBIO Magnolia biondii HOM05D007021 ORTHO05D008916 4.2e-46 189.5 114 84.2
Lj4g0002555 Lotus japonicus HOM05D007021 ORTHO05D008916 5.4e-46 189.1 121 81.0
TPR.G1394 Trifolium pratense HOM05D007021 ORTHO05D008916 9.3e-46 188.3 122 80.3
Aa31LG8G4800 Aethionema arabicum HOM05D007021 ORTHO05D008916 1.2e-45 188.0 128 75.0
arahy.Tifrunner.gnm1.ann1.2FQ1SS Arachis hypogaea HOM05D007021 ORTHO05D008916 1.2e-45 188.0 124 81.5
Psat7g001280 Pisum sativum HOM05D007021 ORTHO05D008916 3.5e-45 186.4 139 72.7
Hund08707 Selenicereus undatus HOM05D007021 ORTHO05D008916 4.6e-45 186.0 174 60.9
Oeu046158.1 Olea europaea HOM05D007021 ORTHO05D008916 6.0e-45 185.7 112 84.8
arahy.Tifrunner.gnm1.ann1.I2I16V Arachis hypogaea HOM05D007021 ORTHO05D008916 7.9e-45 185.3 121 82.6
THA.LOC104821829 Tarenaya hassleriana HOM05D007021 ORTHO05D008916 7.9e-45 185.3 127 74.0
BcaB06g25855 Brassica carinata HOM05D007021 ORTHO05D008916 1.3e-44 184.5 124 73.4
C05p48360 Brassica napus HOM05D007021 ORTHO05D008916 1.8e-44 184.1 129 73.6
PSO384G2008 Papaver somniferum HOM05D007021 ORTHO05D008916 1.8e-44 184.1 122 81.1
ECA232G1431 Erigeron canadensis HOM05D000006 ORTHO05D000091 2.3e-44 183.7 135 71.9
Gohir.1Z049463 Gossypium hirsutum HOM05D007021 ORTHO05D008916 6.7e-44 182.2 170 65.3
CDE04G1339 Ceratophyllum demersum HOM05D000015 ORTHO05D002445 4.3e-43 179.5 143 67.1
Sp3g16050 Schrenkiella parvula HOM05D007021 ORTHO05D008916 7.4e-43 178.7 165 60.0
unitig_899.g15339 Utricularia gibba HOM05D007021 ORTHO05D008916 7.4e-43 178.7 109 85.3
Medtr8g107430 Medicago truncatula HOM05D007021 ORTHO05D008916 1.3e-42 177.9 107 85.0
BcaC05g28735 Brassica carinata HOM05D007021 ORTHO05D008916 2.1e-42 177.2 111 78.4
A05p31870 Brassica napus HOM05D007021 ORTHO05D008916 2.1e-42 177.2 111 78.4
BolC5t33573H Brassica oleracea HOM05D007021 ORTHO05D008916 2.1e-42 177.2 111 78.4
BraA05t22019Z Brassica rapa HOM05D007021 ORTHO05D008916 2.1e-42 177.2 111 78.4
Zm00001eb150510 Zea mays HOM05D007021 ORTHO05D008916 2.1e-42 177.2 126 73.0
Os01g0805200 Oryza sativa ssp. japonica HOM05D007021 ORTHO05D008916 8.1e-42 175.3 109 79.8
SEGI_41594 Sequoiadendron giganteum HOM05D007021 ORTHO05D008916 2.4e-41 173.7 123 76.4
EL10Ac8g19152 Beta vulgaris HOM05D007021 ORTHO05D008916 3.1e-41 173.3 113 77.9
Pp3c5_23310 Physcomitrium patens HOM05D007021 ORTHO05D008916 1.5e-40 171.0 133 66.2
Carub.0003s1766 Capsella rubella HOM05D007021 ORTHO05D008916 7.6e-40 168.7 106 78.3
Duzib068G0088 Durio zibethinus HOM05D007021 ORTHO05D008916 7.6e-40 168.7 170 60.6
AL3G31100 Arabidopsis lyrata HOM05D007021 ORTHO05D008916 1.3e-39 167.9 106 77.4
AT3G17930 Arabidopsis thaliana HOM05D007021 ORTHO05D008916 1.3e-39 167.9 106 77.4
Mapoly0023s0040 Marchantia polymorpha HOM05D007021 ORTHO05D008916 1.0e-36 158.3 136 61.8
AagrBONN_evm.TU.Sc2ySwM_117.710 Anthoceros agrestis HOM05D007021 ORTHO05D008916 1.8e-36 157.5 128 63.3
AagrBONN_evm.TU.Sc2ySwM_340.579 Anthoceros agrestis HOM05D007021 ORTHO05D008916 3.9e-36 156.4 128 62.5
SMO353G0175 Selaginella moellendorffii HOM05D007021 ORTHO05D008916 5.1e-36 156.0 113 69.9
CDE07G1635 Ceratophyllum demersum HOM05D007021 ORTHO05D008916 1.9e-35 154.1 128 63.3
Peaxi162Scf00828g00016 Petunia axillaris HOM05D007021 ORTHO05D008916 6.2e-34 149.1 86 91.9
DCAR_014390 Daucus carota HOM05D007021 ORTHO05D008916 5.3e-33 146.0 89 86.5
AUR62025165 Chenopodium quinoa HOM05D007021 ORTHO05D008916 2.2e-31 140.6 140 58.6
CBR_g48186 Chara braunii HOM05D007021 ORTHO05D008916 3.2e-30 136.7 117 59.0
AUR62029014 Chenopodium quinoa HOM05D007021 ORTHO05D008916 3.2e-30 136.7 86 82.6
Oeu010907.1 Olea europaea HOM05D007021 ORTHO05D008916 1.8e-25 120.9 136 53.7
Cre01.g000850 Chlamydomonas reinhardtii HOM05D007021 ORTHO05D008916 2.6e-24 117.1 139 46.0
MD14G1237400 Malus domestica HOM05D007021 ORTHO05D008916 5.1e-20 102.8 53 94.3
MCO16G182 Micromonas commoda HOM05D007021 ORTHO05D008916 4.1e-17 93.2 79 57.0
PRCOL_00000692 Prasinoderma coloniale HOM05D007021 ORTHO05D008916 2.9e-15 87.0 112 42.9
Cfa007388 Carpinus fangiana HOM05D007021 ORTHO05D121974 3.6e-13 80.1 95 42.1


User provided reference genes

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